CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 43 | A43del | del | GCC | --- | 738 | 738 | 1 | 27882-27884 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 43 | A43del | GCC | --- | 738 | 738 | All | 0.000141 |
ORF7b | 43 | A43del | GCC | --- | 157 | 157 | B.1.1.222 | 0.032028 |
ORF7b | 43 | A43del | GCC | --- | 136 | 136 | B.1.1.7 | 0.000122 |
ORF7b | 43 | A43del | GCC | --- | 78 | 78 | AY.4 | 0.000121 |
ORF7b | 43 | A43del | GCC | --- | 49 | 49 | B.1.243 | 0.00341 |
ORF7b | 43 | A43del | GCC | --- | 37 | 37 | AY.29 | 0.000584 |
ORF7b | 43 | A43del | GCC | --- | 24 | 24 | AY.98 | 0.001896 |
ORF7b | 43 | A43del | GCC | --- | 24 | 24 | B.1.160 | 0.000749 |
ORF7b | 43 | A43del | GCC | --- | 22 | 22 | B.1.1 | 0.000399 |
ORF7b | 43 | A43del | GCC | --- | 17 | 17 | B | 0.002173 |
ORF7b | 43 | A43del | GCC | --- | 16 | 16 | B.1.2 | 0.000141 |
ORF7b | 43 | A43del | GCC | --- | 9 | 9 | AY.103 | 0.000056 |
ORF7b | 43 | A43del | GCC | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF7b | 43 | A43del | GCC | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | 0.333333 | |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | AY.43 | 0.000027 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | AY.44 | 0.000037 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | B.1 | 0.000055 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | B.1.1.214 | 0.000333 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | B.1.1.318 | 0.001811 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF7b | 43 | A43del | GCC | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7b | 43 | A43del | GCC | --- | 4 | 4 | AY.3 | 0.00004 |
ORF7b | 43 | A43del | GCC | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF7b | 43 | A43del | GCC | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF7b | 43 | A43del | GCC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF7b | 43 | A43del | GCC | --- | 3 | 3 | AY.37 | 0.000948 |
ORF7b | 43 | A43del | GCC | --- | 3 | 3 | AY.48 | 0.001395 |
ORF7b | 43 | A43del | GCC | --- | 3 | 3 | B.1.126 | 0.003827 |
ORF7b | 43 | A43del | GCC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | AD.2 | 0.000438 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | AY.118 | 0.000125 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | AY.46 | 0.000208 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | AY.47 | 0.000062 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | B.1.1.277 | 0.001517 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7b | 43 | A43del | GCC | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.106 | 0.000335 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.14 | 0.000088 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.55 | 0.000917 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.58 | 0.000907 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.71 | 0.000475 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.92 | 0.000287 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.1.464 | 0.001473 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.400 | 0.000429 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.509 | 0.000866 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | C.26 | 0.007353 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | C.37 | 0.000116 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | P.1 | 0.000016 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 43 | A43del | GCC | --- | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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