CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 41 | C41F | nonsyn | tGt | tTt | 4162 | 4159 | 0.999279 | 27876-27878 | |
ORF7b | 41 | C41F | nonsyn | tGT | tTC | 4162 | 3 | 0.000720807 | 27876-27878 | |
ORF7b | 41 | C41C | syn | tgT | tgC | 3196 | 3196 | 1 | 27876-27878 | |
ORF7b | 41 | C41del | del | TGT | --- | 396 | 396 | 1 | 27876-27878 | |
ORF7b | 41 | C41S | nonsyn | tGt | tCt | 382 | 305 | 0.798429 | 27876-27878 | |
ORF7b | 41 | C41S | nonsyn | Tgt | Agt | 382 | 77 | 0.201571 | 27876-27878 | |
ORF7b | 41 | C41Y | nonsyn | tGt | tAt | 186 | 186 | 1 | 27876-27878 | |
ORF7b | 41 | C41W | nonsyn | tgT | tgG | 107 | 107 | 1 | 27876-27878 | |
ORF7b | 41 | C41R | nonsyn | Tgt | Cgt | 94 | 88 | 0.93617 | 27876-27878 | |
ORF7b | 41 | C41R | nonsyn | TgT | CgA | 94 | 3 | 0.0319149 | 27876-27878 | |
ORF7b | 41 | C41R | nonsyn | TgT | AgA | 94 | 2 | 0.0212766 | 27876-27878 | |
ORF7b | 41 | C41R | nonsyn | TgT | CgC | 94 | 1 | 0.0106383 | 27876-27878 | |
ORF7b | 41 | C41V | nonsyn | TGt | GTt | 87 | 86 | 0.988506 | 27876-27878 | |
ORF7b | 41 | C41V | nonsyn | TGT | GTC | 87 | 1 | 0.0114943 | 27876-27878 | |
ORF7b | 41 | C41G | nonsyn | Tgt | Ggt | 64 | 63 | 0.984375 | 27876-27878 | |
ORF7b | 41 | C41G | nonsyn | TgT | GgA | 64 | 1 | 0.015625 | 27876-27878 | |
ORF7b | 41 | C41del2 | del | tGT | t-- | 63 | 59 | 0.936508 | 27876-27878 | |
ORF7b | 41 | C41del2 | del | TGt | --t | 63 | 3 | 0.047619 | 27876-27878 | |
ORF7b | 41 | C41del2 | del | TGT | --S | 63 | 1 | 0.015873 | 27876-27878 | |
ORF7b | 41 | C41del1 | del | tGt | t-t | 28 | 14 | 0.5 | 27876-27878 | |
ORF7b | 41 | C41del1 | del | tgT | tg- | 28 | 11 | 0.392857 | 27876-27878 | |
ORF7b | 41 | C41del1 | del | TGT | BD- | 28 | 2 | 0.0714286 | 27876-27878 | |
ORF7b | 41 | C41del1 | del | TgT | Ag- | 28 | 1 | 0.0357143 | 27876-27878 | |
ORF7b | 41 | C41X | nonsyn | tgT | tgA | 10 | 7 | 0.7 | 27876-27878 | |
ORF7b | 41 | C41X | nonsyn | tGT | tAA | 10 | 3 | 0.3 | 27876-27878 | |
ORF7b | 41 | C41L | nonsyn | TGt | CTt | 5 | 3 | 0.6 | 27876-27878 | |
ORF7b | 41 | C41L | nonsyn | tGT | tTG | 5 | 1 | 0.2 | 27876-27878 | |
ORF7b | 41 | C41L | nonsyn | TGT | CTC | 5 | 1 | 0.2 | 27876-27878 | |
ORF7b | 41 | C41H | nonsyn | TGt | CAt | 3 | 3 | 1 | 27876-27878 | |
ORF7b | 41 | C41Q | nonsyn | TGT | CAA | 3 | 3 | 1 | 27876-27878 | |
ORF7b | 41 | C41N | nonsyn | TGt | AAt | 2 | 2 | 1 | 27876-27878 | |
ORF7b | 41 | C41K | nonsyn | TGT | AAA | 2 | 2 | 1 | 27876-27878 | |
ORF7b | 41 | C41D | nonsyn | TGt | GAt | 2 | 2 | 1 | 27876-27878 | |
ORF7b | 41 | C41I | nonsyn | TGt | ATt | 1 | 1 | 1 | 27876-27878 | |
ORF7b | 41 | C41E | nonsyn | TGT | GAA | 1 | 1 | 1 | 27876-27878 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 41 | C41F | tGt | tTt | 4159 | 4162 | All | 0.000795 |
ORF7b | 41 | C41F | tGT | tTC | 3 | 4162 | All | 0.000001 |
ORF7b | 41 | C41C | tgT | tgC | 3196 | 3196 | All | 0.000611 |
ORF7b | 41 | C41C | tgT | tgC | 2655 | 2655 | AY.68 | 0.7268 |
ORF7b | 41 | C41F | tGt | tTt | 610 | 610 | B.1.160 | 0.019024 |
ORF7b | 41 | C41F | tGt | tTt | 462 | 462 | B.1.1.7 | 0.000414 |
ORF7b | 41 | C41F | tGt | tTt | 409 | 409 | B.1.160.26 | 0.990315 |
ORF7b | 41 | C41del | TGT | --- | 396 | 396 | All | 0.000076 |
ORF7b | 41 | C41S | tGt | tCt | 305 | 382 | All | 0.000058 |
ORF7b | 41 | C41S | Tgt | Agt | 77 | 382 | All | 0.000015 |
ORF7b | 41 | C41F | tGt | tTt | 253 | 253 | AY.4 | 0.000394 |
ORF7b | 41 | C41Y | tGt | tAt | 186 | 186 | All | 0.000036 |
ORF7b | 41 | C41F | tGt | tTt | 167 | 167 | AY.44 | 0.001016 |
ORF7b | 41 | C41F | tGt | tTt | 160 | 160 | B.1.1.237 | 0.864865 |
ORF7b | 41 | C41S | tGt | tCt | 147 | 154 | B.1.1.7 | 0.000132 |
ORF7b | 41 | C41S | Tgt | Agt | 7 | 154 | B.1.1.7 | 0.000006 |
ORF7b | 41 | C41F | tGt | tTt | 137 | 137 | B.1.160.18 | 1 |
ORF7b | 41 | C41F | tGt | tTt | 134 | 134 | B.1.617.2 | 0.000505 |
ORF7b | 41 | C41F | tGt | tTt | 128 | 128 | B.1.1.416 | 0.115837 |
ORF7b | 41 | C41C | tgT | tgC | 128 | 128 | B.1.617.2 | 0.000482 |
ORF7b | 41 | C41F | tGt | tTt | 117 | 117 | AY.103 | 0.000726 |
ORF7b | 41 | C41F | tGt | tTt | 116 | 116 | B.1.177.17 | 0.095238 |
ORF7b | 41 | C41F | tGt | tTt | 115 | 115 | AY.43 | 0.00051 |
ORF7b | 41 | C41F | tGt | tTt | 114 | 114 | A.6 | 0.584615 |
ORF7b | 41 | C41C | tgT | tgC | 108 | 108 | AY.61 | 0.011316 |
ORF7b | 41 | C41W | tgT | tgG | 107 | 107 | All | 0.00002 |
ORF7b | 41 | C41R | Tgt | Cgt | 88 | 94 | All | 0.000017 |
ORF7b | 41 | C41R | TgT | CgA | 3 | 94 | All | 0.000001 |
ORF7b | 41 | C41R | TgT | AgA | 2 | 94 | All | 0 |
ORF7b | 41 | C41R | TgT | CgC | 1 | 94 | All | 0 |
ORF7b | 41 | C41V | TGt | GTt | 86 | 87 | All | 0.000016 |
ORF7b | 41 | C41V | TGT | GTC | 1 | 87 | All | 0 |
ORF7b | 41 | C41C | tgT | tgC | 86 | 86 | B.1.1.7 | 0.000077 |
ORF7b | 41 | C41F | tGt | tTt | 84 | 84 | B.1.1 | 0.001524 |
ORF7b | 41 | C41F | tGt | tTt | 84 | 84 | B.1.177 | 0.001106 |
ORF7b | 41 | C41F | tGt | tTt | 67 | 67 | B.1.1.176 | 0.029438 |
ORF7b | 41 | C41del | TGT | --- | 66 | 66 | AY.4 | 0.000103 |
ORF7b | 41 | C41F | tGt | tTt | 66 | 66 | B.1.2 | 0.000581 |
ORF7b | 41 | C41G | Tgt | Ggt | 63 | 64 | All | 0.000012 |
ORF7b | 41 | C41G | TgT | GgA | 1 | 64 | All | 0 |
ORF7b | 41 | C41del2 | tGT | t-- | 59 | 63 | All | 0.000011 |
ORF7b | 41 | C41del2 | TGt | --t | 3 | 63 | All | 0.000001 |
ORF7b | 41 | C41del2 | TGT | --S | 1 | 63 | All | 0 |
ORF7b | 41 | C41del | TGT | --- | 63 | 63 | B.1.1.7 | 0.000056 |
ORF7b | 41 | C41F | tGt | tTt | 61 | 61 | AY.25 | 0.000367 |
ORF7b | 41 | C41C | tgT | tgC | 58 | 58 | B.1.177.59 | 0.935484 |
ORF7b | 41 | C41del2 | tGT | t-- | 54 | 54 | B.1.1.7 | 0.000048 |
ORF7b | 41 | C41F | tGt | tTt | 51 | 51 | B.1.1.519 | 0.002025 |
ORF7b | 41 | C41R | Tgt | Cgt | 50 | 50 | B.1.1.7 | 0.000045 |
ORF7b | 41 | C41del | TGT | --- | 49 | 49 | B.1.243 | 0.00341 |
ORF7b | 41 | C41F | tGt | tTt | 47 | 47 | B.1 | 0.00043 |
ORF7b | 41 | C41W | tgT | tgG | 47 | 47 | B.1.1.7 | 0.000042 |
ORF7b | 41 | C41F | tGt | tTt | 40 | 41 | P.1 | 0.00063 |
ORF7b | 41 | C41F | tGT | tTC | 1 | 41 | P.1 | 0.000016 |
ORF7b | 41 | C41del | TGT | --- | 37 | 37 | AY.29 | 0.000584 |
ORF7b | 41 | C41F | tGt | tTt | 35 | 35 | AY.107 | 0.016309 |
ORF7b | 41 | C41F | tGt | tTt | 35 | 35 | B.1.1.37 | 0.00675 |
ORF7b | 41 | C41F | tGt | tTt | 34 | 34 | AY.7.2 | 0.019016 |
ORF7b | 41 | C41F | tGt | tTt | 31 | 31 | B.1.177.12 | 0.004703 |
ORF7b | 41 | C41W | tgT | tgG | 31 | 31 | B.1.221 | 0.002202 |
ORF7b | 41 | C41V | TGt | GTt | 30 | 30 | AY.98 | 0.00237 |
ORF7b | 41 | C41del1 | tGt | t-t | 14 | 28 | All | 0.000003 |
ORF7b | 41 | C41del1 | tgT | tg- | 11 | 28 | All | 0.000002 |
ORF7b | 41 | C41del1 | TGT | BD- | 2 | 28 | All | 0 |
ORF7b | 41 | C41del1 | TgT | Ag- | 1 | 28 | All | 0 |
ORF7b | 41 | C41Y | tGt | tAt | 27 | 27 | B.1.1.7 | 0.000024 |
ORF7b | 41 | C41F | tGt | tTt | 26 | 26 | AY.3 | 0.000259 |
ORF7b | 41 | C41F | tGt | tTt | 25 | 25 | B.1.1.376 | 0.14881 |
ORF7b | 41 | C41F | tGt | tTt | 24 | 24 | B.1.1.325 | 0.615385 |
ORF7b | 41 | C41G | Tgt | Ggt | 22 | 22 | AY.39 | 0.000544 |
ORF7b | 41 | C41S | Tgt | Agt | 20 | 22 | AY.43 | 0.000089 |
ORF7b | 41 | C41S | tGt | tCt | 2 | 22 | AY.43 | 0.000009 |
ORF7b | 41 | C41V | TGt | GTt | 21 | 21 | B.1.617.2 | 0.000079 |
ORF7b | 41 | C41F | tGt | tTt | 20 | 20 | AY.102 | 0.00053 |
ORF7b | 41 | C41S | Tgt | Agt | 20 | 20 | B.1.126 | 0.02551 |
ORF7b | 41 | C41F | tGt | tTt | 20 | 20 | C.37 | 0.002321 |
ORF7b | 41 | C41del | TGT | --- | 17 | 17 | B | 0.002173 |
ORF7b | 41 | C41Y | tGt | tAt | 17 | 17 | B.1.2 | 0.00015 |
ORF7b | 41 | C41S | tGt | tCt | 17 | 17 | B.1.499 | 0.017857 |
ORF7b | 41 | C41Y | tGt | tAt | 16 | 16 | AY.4 | 0.000025 |
ORF7b | 41 | C41Y | tGt | tAt | 16 | 16 | AY.7 | 0.003136 |
ORF7b | 41 | C41C | tgT | tgC | 16 | 16 | AY.75.1 | 0.002885 |
ORF7b | 41 | C41F | tGt | tTt | 15 | 15 | AY.39 | 0.000371 |
ORF7b | 41 | C41S | tGt | tCt | 15 | 15 | B.1.1.277 | 0.011381 |
ORF7b | 41 | C41Y | tGt | tAt | 15 | 15 | B.1.36.8 | 0.015 |
ORF7b | 41 | C41S | Tgt | Agt | 9 | 14 | B.1 | 0.000082 |
ORF7b | 41 | C41S | tGt | tCt | 5 | 14 | B.1 | 0.000046 |
ORF7b | 41 | C41F | tGt | tTt | 13 | 13 | A.2.5.2 | 0.02044 |
ORF7b | 41 | C41R | Tgt | Cgt | 8 | 13 | P.1 | 0.000126 |
ORF7b | 41 | C41R | TgT | CgA | 3 | 13 | P.1 | 0.000047 |
ORF7b | 41 | C41R | TgT | CgC | 1 | 13 | P.1 | 0.000016 |
ORF7b | 41 | C41R | TgT | AgA | 1 | 13 | P.1 | 0.000016 |
ORF7b | 41 | C41F | tGt | tTt | 12 | 12 | AY.75 | 0.000672 |
ORF7b | 41 | C41F | tGt | tTt | 12 | 12 | B.1.177.6 | 0.011719 |
ORF7b | 41 | C41del | TGT | --- | 12 | 12 | B.1.2 | 0.000106 |
ORF7b | 41 | C41G | Tgt | Ggt | 12 | 12 | B.1.617.2 | 0.000045 |
ORF7b | 41 | C41C | tgT | tgC | 11 | 11 | AY.39 | 0.000272 |
ORF7b | 41 | C41C | tgT | tgC | 11 | 11 | AY.4 | 0.000017 |
ORF7b | 41 | C41V | TGt | GTt | 11 | 11 | AY.4 | 0.000017 |
ORF7b | 41 | C41C | tgT | tgC | 11 | 11 | AY.44 | 0.000067 |
ORF7b | 41 | C41S | tGt | tCt | 11 | 11 | B.1.1.1 | 0.003594 |
ORF7b | 41 | C41F | tGt | tTt | 11 | 11 | B.1.1.222 | 0.002244 |
ORF7b | 41 | C41F | tGt | tTt | 11 | 11 | B.1.351 | 0.000327 |
ORF7b | 41 | C41X | tgT | tgA | 7 | 10 | All | 0.000001 |
ORF7b | 41 | C41X | tGT | tAA | 3 | 10 | All | 0.000001 |
ORF7b | 41 | C41Y | tGt | tAt | 10 | 10 | AY.118 | 0.000626 |
ORF7b | 41 | C41del | TGT | --- | 9 | 9 | AY.103 | 0.000056 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | AY.33 | 0.000601 |
ORF7b | 41 | C41del | TGT | --- | 9 | 9 | AY.44 | 0.000055 |
ORF7b | 41 | C41C | tgT | tgC | 9 | 9 | B.1 | 0.000082 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.1.311 | 0.003223 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.1.50 | 0.00611 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.221 | 0.000639 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.36.29 | 0.004656 |
ORF7b | 41 | C41Y | tGt | tAt | 8 | 8 | AY.111 | 0.001465 |
ORF7b | 41 | C41S | tGt | tCt | 7 | 8 | AY.4 | 0.000011 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 8 | AY.4 | 0.000002 |
ORF7b | 41 | C41F | tGt | tTt | 8 | 8 | AY.54 | 0.000763 |
ORF7b | 41 | C41F | tGt | tTt | 8 | 8 | B.1.1.273 | 0.054054 |
ORF7b | 41 | C41S | tGt | tCt | 8 | 8 | B.1.177 | 0.000105 |
ORF7b | 41 | C41S | tGt | tCt | 8 | 8 | B.1.258.11 | 0.003171 |
ORF7b | 41 | C41F | tGt | tTt | 8 | 8 | B.1.427 | 0.000404 |
ORF7b | 41 | C41C | tgT | tgC | 8 | 8 | P.1 | 0.000126 |
ORF7b | 41 | C41S | tGt | tCt | 4 | 8 | P.1 | 0.000063 |
ORF7b | 41 | C41S | Tgt | Agt | 4 | 8 | P.1 | 0.000063 |
ORF7b | 41 | C41C | tgT | tgC | 7 | 7 | AY.16.1 | 0.003289 |
ORF7b | 41 | C41S | tGt | tCt | 7 | 7 | AY.26 | 0.000198 |
ORF7b | 41 | C41C | tgT | tgC | 7 | 7 | AY.43 | 0.000031 |
ORF7b | 41 | C41Y | tGt | tAt | 7 | 7 | AY.44 | 0.000043 |
ORF7b | 41 | C41C | tgT | tgC | 7 | 7 | AY.55 | 0.006422 |
ORF7b | 41 | C41del | TGT | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.1.28 | 0.002179 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.1.33 | 0.002946 |
ORF7b | 41 | C41Y | tGt | tAt | 7 | 7 | B.1.1.519 | 0.000278 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.258 | 0.000466 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.351.2 | 0.002118 |
ORF7b | 41 | C41Y | tGt | tAt | 6 | 6 | AY.25 | 0.000036 |
ORF7b | 41 | C41del | TGT | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | AY.36 | 0.000889 |
ORF7b | 41 | C41del | TGT | --- | 6 | 6 | AY.43 | 0.000027 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | AY.98 | 0.000474 |
ORF7b | 41 | C41S | tGt | tCt | 6 | 6 | B.1.1 | 0.000109 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | B.1.1.277 | 0.004552 |
ORF7b | 41 | C41del | TGT | --- | 6 | 6 | B.1.1.318 | 0.001811 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | B.1.1.398 | 0.019355 |
ORF7b | 41 | C41del1 | tGt | t-t | 6 | 6 | B.1.36 | 0.000875 |
ORF7b | 41 | C41del | TGT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7b | 41 | C41del | TGT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7b | 41 | C41S | tGt | tCt | 5 | 6 | B.1.617.2 | 0.000019 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 6 | B.1.617.2 | 0.000004 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | B.1.621 | 0.000531 |
ORF7b | 41 | C41L | TGt | CTt | 3 | 5 | All | 0.000001 |
ORF7b | 41 | C41L | tGT | tTG | 1 | 5 | All | 0 |
ORF7b | 41 | C41L | TGT | CTC | 1 | 5 | All | 0 |
ORF7b | 41 | C41C | tgT | tgC | 5 | 5 | AY.11 | 0.006693 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.116 | 0.001434 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.117 | 0.000423 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.24 | 0.002155 |
ORF7b | 41 | C41G | Tgt | Ggt | 5 | 5 | AY.4 | 0.000008 |
ORF7b | 41 | C41Y | tGt | tAt | 5 | 5 | AY.43 | 0.000022 |
ORF7b | 41 | C41S | tGt | tCt | 4 | 5 | AY.44 | 0.000024 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 5 | AY.44 | 0.000006 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.9.1 | 0.000419 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.160.32 | 0.021459 |
ORF7b | 41 | C41C | tgT | tgC | 5 | 5 | B.1.177 | 0.000066 |
ORF7b | 41 | C41G | Tgt | Ggt | 5 | 5 | B.1.177.7 | 0.000824 |
ORF7b | 41 | C41R | Tgt | Cgt | 5 | 5 | B.1.2 | 0.000044 |
ORF7b | 41 | C41S | tGt | tCt | 5 | 5 | B.1.214.2 | 0.002998 |
ORF7b | 41 | C41R | Tgt | Cgt | 5 | 5 | B.1.351 | 0.000149 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.36 | 0.00073 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.371 | 0.005612 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.523 | 0.012255 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF7b | 41 | C41Y | tGt | tAt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | P.1.14 | 0.000239 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | P.1.15 | 0.001162 |
ORF7b | 41 | C41del | TGT | --- | 4 | 4 | 0.222222 | |
ORF7b | 41 | C41C | tgT | tgC | 4 | 4 | AY.103 | 0.000025 |
ORF7b | 41 | C41Y | tGt | tAt | 4 | 4 | AY.109 | 0.002959 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | AY.120 | 0.000149 |
ORF7b | 41 | C41del | TGT | --- | 4 | 4 | AY.3 | 0.00004 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | AY.39.1 | 0.000158 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | AY.5 | 0.000083 |
ORF7b | 41 | C41Y | tGt | tAt | 4 | 4 | AY.5 | 0.000083 |
ORF7b | 41 | C41C | tgT | tgC | 4 | 4 | AY.75 | 0.000224 |
ORF7b | 41 | C41C | tgT | tgC | 4 | 4 | AY.9.2 | 0.000147 |
ORF7b | 41 | C41S | tGt | tCt | 4 | 4 | AY.9.2 | 0.000147 |
ORF7b | 41 | C41del | TGT | --- | 4 | 4 | B.1 | 0.000037 |
ORF7b | 41 | C41Y | tGt | tAt | 4 | 4 | B.1 | 0.000037 |
ORF7b | 41 | C41R | Tgt | Cgt | 4 | 4 | B.1 | 0.000037 |
ORF7b | 41 | C41del | TGT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF7b | 41 | C41del | TGT | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.1.216 | 0.003562 |
ORF7b | 41 | C41del | TGT | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.164 | 0.059701 |
ORF7b | 41 | C41W | tgT | tgG | 4 | 4 | B.1.177.72 | 0.013559 |
ORF7b | 41 | C41Y | tGt | tAt | 4 | 4 | B.1.258 | 0.000266 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.395 | 0.028169 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.397 | 0.019417 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.470 | 0.005618 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.509 | 0.003463 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.589 | 0.030303 |
ORF7b | 41 | C41Q | TGT | CAA | 3 | 3 | All | 0.000001 |
ORF7b | 41 | C41H | TGt | CAt | 3 | 3 | All | 0.000001 |
ORF7b | 41 | C41S | tGt | tCt | 3 | 3 | AY.103 | 0.000019 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.116.1 | 0.000934 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.119 | 0.000106 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF7b | 41 | C41C | tgT | tgC | 3 | 3 | AY.121 | 0.000406 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.20 | 0.000117 |
ORF7b | 41 | C41del | TGT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.26 | 0.000085 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.27 | 0.000194 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.29 | 0.000047 |
ORF7b | 41 | C41C | tgT | tgC | 3 | 3 | AY.3 | 0.00003 |
ORF7b | 41 | C41S | tGt | tCt | 3 | 3 | AY.32 | 0.001597 |
ORF7b | 41 | C41del | TGT | --- | 3 | 3 | AY.39 | 0.000074 |
ORF7b | 41 | C41V | TGt | GTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.46.5 | 0.000595 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.47 | 0.000093 |
ORF7b | 41 | C41del | TGT | --- | 3 | 3 | AY.47 | 0.000093 |
ORF7b | 41 | C41del | TGT | --- | 3 | 3 | AY.48 | 0.001395 |
ORF7b | 41 | C41C | tgT | tgC | 3 | 3 | AY.65 | 0.001599 |
ORF7b | 41 | C41C | tgT | tgC | 3 | 3 | AY.74 | 0.000347 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.9 | 0.000203 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7b | 41 | C41C | tgT | tgC | 3 | 3 | B.1.1.222 | 0.000612 |
ORF7b | 41 | C41S | Tgt | Agt | 2 | 3 | B.1.1.25 | 0.001137 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 3 | B.1.1.25 | 0.000569 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.1.432 | 0.003797 |
ORF7b | 41 | C41del1 | tgT | tg- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7b | 41 | C41V | TGt | GTt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7b | 41 | C41G | Tgt | Ggt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.110.3 | 0.002155 |
ORF7b | 41 | C41S | tGt | tCt | 3 | 3 | B.1.147 | 0.002268 |
ORF7b | 41 | C41X | tgT | tgA | 3 | 3 | B.1.160 | 0.000094 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.177.19 | 0.004292 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.177.37 | 0.081081 |
ORF7b | 41 | C41S | tGt | tCt | 3 | 3 | B.1.2 | 0.000026 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.243 | 0.000209 |
ORF7b | 41 | C41S | tGt | tCt | 3 | 3 | B.1.258 | 0.0002 |
ORF7b | 41 | C41C | tgT | tgC | 3 | 3 | B.1.351 | 0.000089 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.415 | 0.042857 |
ORF7b | 41 | C41S | tGt | tCt | 3 | 3 | B.1.499.1 | 0.333333 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.564 | 0.001278 |
ORF7b | 41 | C41W | tgT | tgG | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.96 | 0.056604 |
ORF7b | 41 | C41S | Tgt | Agt | 3 | 3 | D.2 | 0.000225 |
ORF7b | 41 | C41Q | TGT | CAA | 3 | 3 | P.1 | 0.000047 |
ORF7b | 41 | C41H | TGt | CAt | 3 | 3 | P.1 | 0.000047 |
ORF7b | 41 | C41G | Tgt | Ggt | 2 | 3 | P.1 | 0.000032 |
ORF7b | 41 | C41G | TgT | GgA | 1 | 3 | P.1 | 0.000016 |
ORF7b | 41 | C41del | TGT | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF7b | 41 | C41S | tGt | tCt | 2 | 3 | P.2 | 0.000373 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 3 | P.2 | 0.000187 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | Q.8 | 0.000495 |
ORF7b | 41 | C41G | Tgt | Ggt | 2 | 2 | 0.111111 | |
ORF7b | 41 | C41del1 | TGT | BD- | 2 | 2 | 0.111111 | |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF7b | 41 | C41S | tGt | tCt | 2 | 2 | A.23.1 | 0.001408 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AD.2 | 0.000438 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | AD.2 | 0.000438 |
ORF7b | 41 | C41K | TGT | AAA | 2 | 2 | All | 0 |
ORF7b | 41 | C41D | TGt | GAt | 2 | 2 | All | 0 |
ORF7b | 41 | C41N | TGt | AAt | 2 | 2 | All | 0 |
ORF7b | 41 | C41Y | tGt | tAt | 2 | 2 | AY.100 | 0.000092 |
ORF7b | 41 | C41W | tgT | tgG | 2 | 2 | AY.102 | 0.000053 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.113 | 0.000285 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF7b | 41 | C41C | tgT | tgC | 2 | 2 | AY.16 | 0.000759 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.23 | 0.000139 |
ORF7b | 41 | C41C | tgT | tgC | 2 | 2 | AY.25 | 0.000012 |
ORF7b | 41 | C41Y | tGt | tAt | 2 | 2 | AY.26 | 0.000057 |
ORF7b | 41 | C41W | tgT | tgG | 2 | 2 | AY.3 | 0.00002 |
ORF7b | 41 | C41del2 | TGt | --t | 2 | 2 | AY.30 | 0.000791 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 2 | AY.30 | 0.000396 |
ORF7b | 41 | C41F | tGT | tTC | 1 | 2 | AY.30 | 0.000396 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.35 | 0.000466 |
ORF7b | 41 | C41W | tgT | tgG | 2 | 2 | AY.4 | 0.000003 |
ORF7b | 41 | C41R | Tgt | Cgt | 2 | 2 | AY.4 | 0.000003 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.40 | 0.001929 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | AY.55 | 0.001835 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.74 | 0.000231 |
ORF7b | 41 | C41S | tGt | tCt | 2 | 2 | AY.74 | 0.000231 |
ORF7b | 41 | C41Y | tGt | tAt | 2 | 2 | AY.77 | 0.002255 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | AY.85 | 0.000854 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.9.2 | 0.000073 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.91 | 0.001461 |
ORF7b | 41 | C41W | tgT | tgG | 2 | 2 | AY.92 | 0.000575 |
ORF7b | 41 | C41C | tgT | tgC | 2 | 2 | AY.98 | 0.000158 |
ORF7b | 41 | C41del1 | tGt | t-t | 2 | 2 | B.1 | 0.000018 |
ORF7b | 41 | C41W | tgT | tgG | 2 | 2 | B.1 | 0.000018 |
ORF7b | 41 | C41R | Tgt | Cgt | 2 | 2 | B.1.1 | 0.000036 |
ORF7b | 41 | C41V | TGt | GTt | 2 | 2 | B.1.1 | 0.000036 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7b | 41 | C41S | tGt | tCt | 2 | 2 | B.1.1.100 | 0.08 |
ORF7b | 41 | C41del1 | tgT | tg- | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7b | 41 | C41del2 | tGT | t-- | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7b | 41 | C41V | TGt | GTt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF7b | 41 | C41G | Tgt | Ggt | 2 | 2 | B.1.1.29 | 0.020619 |
ORF7b | 41 | C41V | TGt | GTt | 2 | 2 | B.1.1.29 | 0.020619 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.29 | 0.020619 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF7b | 41 | C41W | tgT | tgG | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.397 | 0.004505 |
ORF7b | 41 | C41S | Tgt | Agt | 2 | 2 | B.1.1.432 | 0.002532 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | B.1.126 | 0.002551 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF7b | 41 | C41Y | tGt | tAt | 2 | 2 | B.1.177.77 | 0.001452 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.177.82 | 0.000955 |
ORF7b | 41 | C41C | tgT | tgC | 2 | 2 | B.1.2 | 0.000018 |
ORF7b | 41 | C41C | tgT | tgC | 2 | 2 | B.1.234 | 0.000264 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.239 | 0.002442 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 2 | B.1.260 | 0.003344 |
ORF7b | 41 | C41F | tGT | tTC | 1 | 2 | B.1.260 | 0.003344 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.369 | 0.00057 |
ORF7b | 41 | C41del | TGT | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF7b | 41 | C41S | tGt | tCt | 2 | 2 | B.1.459 | 0.008163 |
ORF7b | 41 | C41del1 | tGt | t-t | 2 | 2 | B.1.480 | 0.004975 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.526 | 0.000047 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.588 | 0.00182 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.596 | 0.000174 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.637 | 0.000146 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | C.36 | 0.001821 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | D.2 | 0.00015 |
ORF7b | 41 | C41K | TGT | AAA | 2 | 2 | P.1 | 0.000032 |
ORF7b | 41 | C41Y | tGt | tAt | 2 | 2 | P.1 | 0.000032 |
ORF7b | 41 | C41N | TGt | AAt | 2 | 2 | P.1 | 0.000032 |
ORF7b | 41 | C41X | tGT | tAA | 1 | 2 | P.1 | 0.000016 |
ORF7b | 41 | C41L | TGT | CTC | 1 | 2 | P.1 | 0.000016 |
ORF7b | 41 | C41L | TGt | CTt | 1 | 2 | P.1 | 0.000016 |
ORF7b | 41 | C41X | tgT | tgA | 1 | 2 | P.1 | 0.000016 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | P.1.12 | 0.000968 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | A.1 | 0.000282 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | A.23.1 | 0.000704 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AH.1 | 0.142857 |
ORF7b | 41 | C41E | TGT | GAA | 1 | 1 | All | 0 |
ORF7b | 41 | C41I | TGt | ATt | 1 | 1 | All | 0 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.1 | 0.000396 |
ORF7b | 41 | C41del1 | tgT | tg- | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | AY.106 | 0.000335 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | AY.11 | 0.001339 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.11 | 0.001339 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.114 | 0.000231 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.115 | 0.005208 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.13 | 0.000161 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.14 | 0.000088 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.19 | 0.00114 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.27 | 0.000065 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.28 | 0.00189 |
ORF7b | 41 | C41del1 | tgT | tg- | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 41 | C41del1 | tgT | tg- | 1 | 1 | AY.37 | 0.000316 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.38 | 0.000499 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.38 | 0.000499 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | AY.39.1 | 0.00004 |
ORF7b | 41 | C41D | TGt | GAt | 1 | 1 | AY.4 | 0.000002 |
ORF7b | 41 | C41del1 | tGt | t-t | 1 | 1 | AY.4 | 0.000002 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 41 | C41del1 | tgT | tg- | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.45 | 0.000122 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.46 | 0.000104 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | AY.46.5 | 0.000198 |
ORF7b | 41 | C41L | tGT | tTG | 1 | 1 | AY.46.5 | 0.000198 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.46.5 | 0.000198 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | AY.5 | 0.000021 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.5 | 0.000021 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.52 | 0.000814 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.56 | 0.001605 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.57 | 0.000656 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.58 | 0.000907 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.58 | 0.000907 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.6 | 0.000041 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.67 | 0.000464 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.69 | 0.000187 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | AY.71 | 0.000475 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.71 | 0.000475 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF7b | 41 | C41X | tGT | tAA | 1 | 1 | AY.75.1 | 0.00018 |
ORF7b | 41 | C41del2 | TGT | --S | 1 | 1 | AY.84 | 0.000437 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | AY.95 | 0.000761 |
ORF7b | 41 | C41del2 | tGT | t-- | 1 | 1 | AY.98 | 0.000079 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | AY.98 | 0.000079 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B | 0.000128 |
ORF7b | 41 | C41X | tGT | tAA | 1 | 1 | B.1 | 0.000009 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | B.1 | 0.000009 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | B.1 | 0.000009 |
ORF7b | 41 | C41L | TGt | CTt | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 41 | C41del1 | tgT | tg- | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 41 | C41X | tgT | tgA | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.1.186 | 0.003436 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7b | 41 | C41del1 | tgT | tg- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 41 | C41del1 | tGt | t-t | 1 | 1 | B.1.1.232 | 0.001815 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF7b | 41 | C41del2 | tGT | t-- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.347 | 0.018182 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.359 | 0.027778 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.396 | 0.045455 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.1.396 | 0.045455 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.512 | 0.028571 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7b | 41 | C41X | tgT | tgA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.88 | 0.071429 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.105 | 0.009615 |
ORF7b | 41 | C41del2 | tGT | t-- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.126 | 0.001276 |
ORF7b | 41 | C41del1 | TgT | Ag- | 1 | 1 | B.1.126 | 0.001276 |
ORF7b | 41 | C41R | TgT | AgA | 1 | 1 | B.1.126 | 0.001276 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.164 | 0.014925 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | B.1.177.58 | 0.001332 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 41 | C41W | tgT | tgG | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 41 | C41del2 | TGt | --t | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.206 | 0.000816 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.232 | 0.000537 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.234 | 0.000132 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 1 | B.1.237 | 0.004975 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7b | 41 | C41del1 | tGt | t-t | 1 | 1 | B.1.258.3 | 0.001675 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | B.1.311 | 0.000275 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.315 | 0.006061 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.343 | 0.020833 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.351 | 0.00003 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.36 | 0.000146 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 41 | C41S | Tgt | Agt | 1 | 1 | B.1.371 | 0.001122 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.375 | 0.00082 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.400 | 0.000429 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.404 | 0.001302 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | B.1.422 | 0.000812 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.422 | 0.000812 |
ORF7b | 41 | C41V | TGt | GTt | 1 | 1 | B.1.422 | 0.000812 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.426 | 0.001009 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.428 | 0.00102 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.456 | 0.003268 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.459 | 0.004082 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.508 | 0.025641 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.509 | 0.000866 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 41 | C41X | tgT | tgA | 1 | 1 | B.1.533 | 0.009615 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.561 | 0.000397 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.564 | 0.000426 |
ORF7b | 41 | C41G | Tgt | Ggt | 1 | 1 | B.1.565 | 0.00081 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | B.1.565 | 0.00081 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.609 | 0.000479 |
ORF7b | 41 | C41del1 | tGt | t-t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 41 | C41V | TGT | GTC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 41 | C41L | TGt | CTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.627 | 0.00202 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.632 | 0.006711 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.12 | 0.00641 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | B.4 | 0.002208 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | C.16 | 0.00106 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | C.16 | 0.00106 |
ORF7b | 41 | C41C | tgT | tgC | 1 | 1 | C.16 | 0.00106 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | C.23 | 0.005814 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | C.26 | 0.007353 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | C.37 | 0.000116 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | C.37 | 0.000116 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | C.37.1 | 0.002618 |
ORF7b | 41 | C41R | Tgt | Cgt | 1 | 1 | D.2 | 0.000075 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | N.5 | 0.001767 |
ORF7b | 41 | C41D | TGt | GAt | 1 | 1 | P.1 | 0.000016 |
ORF7b | 41 | C41E | TGT | GAA | 1 | 1 | P.1 | 0.000016 |
ORF7b | 41 | C41I | TGt | ATt | 1 | 1 | P.1 | 0.000016 |
ORF7b | 41 | C41Y | tGt | tAt | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 41 | C41del | TGT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF7b | 41 | C41S | tGt | tCt | 1 | 1 | P.1.15 | 0.000232 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | P.2 | 0.000187 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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