CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 41

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b41C41FnonsyntGttTt416241590.99927927876-27878
ORF7b41C41FnonsyntGTtTC416230.00072080727876-27878
ORF7b41C41CsyntgTtgC31963196127876-27878
ORF7b41C41deldelTGT---396396127876-27878
ORF7b41C41SnonsyntGttCt3823050.79842927876-27878
ORF7b41C41SnonsynTgtAgt382770.20157127876-27878
ORF7b41C41YnonsyntGttAt186186127876-27878
ORF7b41C41WnonsyntgTtgG107107127876-27878
ORF7b41C41RnonsynTgtCgt94880.9361727876-27878
ORF7b41C41RnonsynTgTCgA9430.031914927876-27878
ORF7b41C41RnonsynTgTAgA9420.021276627876-27878
ORF7b41C41RnonsynTgTCgC9410.010638327876-27878
ORF7b41C41VnonsynTGtGTt87860.98850627876-27878
ORF7b41C41VnonsynTGTGTC8710.011494327876-27878
ORF7b41C41GnonsynTgtGgt64630.98437527876-27878
ORF7b41C41GnonsynTgTGgA6410.01562527876-27878
ORF7b41C41del2deltGTt--63590.93650827876-27878
ORF7b41C41del2delTGt--t6330.04761927876-27878
ORF7b41C41del2delTGT--S6310.01587327876-27878
ORF7b41C41del1deltGtt-t28140.527876-27878
ORF7b41C41del1deltgTtg-28110.39285727876-27878
ORF7b41C41del1delTGTBD-2820.071428627876-27878
ORF7b41C41del1delTgTAg-2810.035714327876-27878
ORF7b41C41XnonsyntgTtgA1070.727876-27878
ORF7b41C41XnonsyntGTtAA1030.327876-27878
ORF7b41C41LnonsynTGtCTt530.627876-27878
ORF7b41C41LnonsyntGTtTG510.227876-27878
ORF7b41C41LnonsynTGTCTC510.227876-27878
ORF7b41C41HnonsynTGtCAt33127876-27878
ORF7b41C41QnonsynTGTCAA33127876-27878
ORF7b41C41NnonsynTGtAAt22127876-27878
ORF7b41C41KnonsynTGTAAA22127876-27878
ORF7b41C41DnonsynTGtGAt22127876-27878
ORF7b41C41InonsynTGtATt11127876-27878
ORF7b41C41EnonsynTGTGAA11127876-27878

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b41C41FtGttTt41594162All0.000795
ORF7b41C41FtGTtTC34162All0.000001
ORF7b41C41CtgTtgC31963196All0.000611
ORF7b41C41CtgTtgC26552655AY.680.7268
ORF7b41C41FtGttTt610610B.1.1600.019024
ORF7b41C41FtGttTt462462B.1.1.70.000414
ORF7b41C41FtGttTt409409B.1.160.260.990315
ORF7b41C41delTGT---396396All0.000076
ORF7b41C41StGttCt305382All0.000058
ORF7b41C41STgtAgt77382All0.000015
ORF7b41C41FtGttTt253253AY.40.000394
ORF7b41C41YtGttAt186186All0.000036
ORF7b41C41FtGttTt167167AY.440.001016
ORF7b41C41FtGttTt160160B.1.1.2370.864865
ORF7b41C41StGttCt147154B.1.1.70.000132
ORF7b41C41STgtAgt7154B.1.1.70.000006
ORF7b41C41FtGttTt137137B.1.160.181
ORF7b41C41FtGttTt134134B.1.617.20.000505
ORF7b41C41FtGttTt128128B.1.1.4160.115837
ORF7b41C41CtgTtgC128128B.1.617.20.000482
ORF7b41C41FtGttTt117117AY.1030.000726
ORF7b41C41FtGttTt116116B.1.177.170.095238
ORF7b41C41FtGttTt115115AY.430.00051
ORF7b41C41FtGttTt114114A.60.584615
ORF7b41C41CtgTtgC108108AY.610.011316
ORF7b41C41WtgTtgG107107All0.00002
ORF7b41C41RTgtCgt8894All0.000017
ORF7b41C41RTgTCgA394All0.000001
ORF7b41C41RTgTAgA294All0
ORF7b41C41RTgTCgC194All0
ORF7b41C41VTGtGTt8687All0.000016
ORF7b41C41VTGTGTC187All0
ORF7b41C41CtgTtgC8686B.1.1.70.000077
ORF7b41C41FtGttTt8484B.1.10.001524
ORF7b41C41FtGttTt8484B.1.1770.001106
ORF7b41C41FtGttTt6767B.1.1.1760.029438
ORF7b41C41delTGT---6666AY.40.000103
ORF7b41C41FtGttTt6666B.1.20.000581
ORF7b41C41GTgtGgt6364All0.000012
ORF7b41C41GTgTGgA164All0
ORF7b41C41del2tGTt--5963All0.000011
ORF7b41C41del2TGt--t363All0.000001
ORF7b41C41del2TGT--S163All0
ORF7b41C41delTGT---6363B.1.1.70.000056
ORF7b41C41FtGttTt6161AY.250.000367
ORF7b41C41CtgTtgC5858B.1.177.590.935484
ORF7b41C41del2tGTt--5454B.1.1.70.000048
ORF7b41C41FtGttTt5151B.1.1.5190.002025
ORF7b41C41RTgtCgt5050B.1.1.70.000045
ORF7b41C41delTGT---4949B.1.2430.00341
ORF7b41C41FtGttTt4747B.10.00043
ORF7b41C41WtgTtgG4747B.1.1.70.000042
ORF7b41C41FtGttTt4041P.10.00063
ORF7b41C41FtGTtTC141P.10.000016
ORF7b41C41delTGT---3737AY.290.000584
ORF7b41C41FtGttTt3535AY.1070.016309
ORF7b41C41FtGttTt3535B.1.1.370.00675
ORF7b41C41FtGttTt3434AY.7.20.019016
ORF7b41C41FtGttTt3131B.1.177.120.004703
ORF7b41C41WtgTtgG3131B.1.2210.002202
ORF7b41C41VTGtGTt3030AY.980.00237
ORF7b41C41del1tGtt-t1428All0.000003
ORF7b41C41del1tgTtg-1128All0.000002
ORF7b41C41del1TGTBD-228All0
ORF7b41C41del1TgTAg-128All0
ORF7b41C41YtGttAt2727B.1.1.70.000024
ORF7b41C41FtGttTt2626AY.30.000259
ORF7b41C41FtGttTt2525B.1.1.3760.14881
ORF7b41C41FtGttTt2424B.1.1.3250.615385
ORF7b41C41GTgtGgt2222AY.390.000544
ORF7b41C41STgtAgt2022AY.430.000089
ORF7b41C41StGttCt222AY.430.000009
ORF7b41C41VTGtGTt2121B.1.617.20.000079
ORF7b41C41FtGttTt2020AY.1020.00053
ORF7b41C41STgtAgt2020B.1.1260.02551
ORF7b41C41FtGttTt2020C.370.002321
ORF7b41C41delTGT---1717B0.002173
ORF7b41C41YtGttAt1717B.1.20.00015
ORF7b41C41StGttCt1717B.1.4990.017857
ORF7b41C41YtGttAt1616AY.40.000025
ORF7b41C41YtGttAt1616AY.70.003136
ORF7b41C41CtgTtgC1616AY.75.10.002885
ORF7b41C41FtGttTt1515AY.390.000371
ORF7b41C41StGttCt1515B.1.1.2770.011381
ORF7b41C41YtGttAt1515B.1.36.80.015
ORF7b41C41STgtAgt914B.10.000082
ORF7b41C41StGttCt514B.10.000046
ORF7b41C41FtGttTt1313A.2.5.20.02044
ORF7b41C41RTgtCgt813P.10.000126
ORF7b41C41RTgTCgA313P.10.000047
ORF7b41C41RTgTCgC113P.10.000016
ORF7b41C41RTgTAgA113P.10.000016
ORF7b41C41FtGttTt1212AY.750.000672
ORF7b41C41FtGttTt1212B.1.177.60.011719
ORF7b41C41delTGT---1212B.1.20.000106
ORF7b41C41GTgtGgt1212B.1.617.20.000045
ORF7b41C41CtgTtgC1111AY.390.000272
ORF7b41C41CtgTtgC1111AY.40.000017
ORF7b41C41VTGtGTt1111AY.40.000017
ORF7b41C41CtgTtgC1111AY.440.000067
ORF7b41C41StGttCt1111B.1.1.10.003594
ORF7b41C41FtGttTt1111B.1.1.2220.002244
ORF7b41C41FtGttTt1111B.1.3510.000327
ORF7b41C41XtgTtgA710All0.000001
ORF7b41C41XtGTtAA310All0.000001
ORF7b41C41YtGttAt1010AY.1180.000626
ORF7b41C41delTGT---99AY.1030.000056
ORF7b41C41FtGttTt99AY.330.000601
ORF7b41C41delTGT---99AY.440.000055
ORF7b41C41CtgTtgC99B.10.000082
ORF7b41C41FtGttTt99B.1.1.3110.003223
ORF7b41C41FtGttTt99B.1.1.500.00611
ORF7b41C41FtGttTt99B.1.2210.000639
ORF7b41C41FtGttTt99B.1.36.290.004656
ORF7b41C41YtGttAt88AY.1110.001465
ORF7b41C41StGttCt78AY.40.000011
ORF7b41C41STgtAgt18AY.40.000002
ORF7b41C41FtGttTt88AY.540.000763
ORF7b41C41FtGttTt88B.1.1.2730.054054
ORF7b41C41StGttCt88B.1.1770.000105
ORF7b41C41StGttCt88B.1.258.110.003171
ORF7b41C41FtGttTt88B.1.4270.000404
ORF7b41C41CtgTtgC88P.10.000126
ORF7b41C41StGttCt48P.10.000063
ORF7b41C41STgtAgt48P.10.000063
ORF7b41C41CtgTtgC77AY.16.10.003289
ORF7b41C41StGttCt77AY.260.000198
ORF7b41C41CtgTtgC77AY.430.000031
ORF7b41C41YtGttAt77AY.440.000043
ORF7b41C41CtgTtgC77AY.550.006422
ORF7b41C41delTGT---77B.1.1.2650.022082
ORF7b41C41FtGttTt77B.1.1.280.002179
ORF7b41C41FtGttTt77B.1.1.330.002946
ORF7b41C41YtGttAt77B.1.1.5190.000278
ORF7b41C41FtGttTt77B.1.2580.000466
ORF7b41C41FtGttTt77B.1.351.20.002118
ORF7b41C41YtGttAt66AY.250.000036
ORF7b41C41delTGT---66AY.29.10.001323
ORF7b41C41FtGttTt66AY.360.000889
ORF7b41C41delTGT---66AY.430.000027
ORF7b41C41FtGttTt66AY.980.000474
ORF7b41C41StGttCt66B.1.10.000109
ORF7b41C41FtGttTt66B.1.1.2770.004552
ORF7b41C41delTGT---66B.1.1.3180.001811
ORF7b41C41FtGttTt66B.1.1.3980.019355
ORF7b41C41del1tGtt-t66B.1.360.000875
ORF7b41C41delTGT---66B.1.5260.000141
ORF7b41C41delTGT---66B.1.617.20.000023
ORF7b41C41StGttCt56B.1.617.20.000019
ORF7b41C41STgtAgt16B.1.617.20.000004
ORF7b41C41FtGttTt66B.1.6210.000531
ORF7b41C41LTGtCTt35All0.000001
ORF7b41C41LtGTtTG15All0
ORF7b41C41LTGTCTC15All0
ORF7b41C41CtgTtgC55AY.110.006693
ORF7b41C41FtGttTt55AY.1160.001434
ORF7b41C41FtGttTt55AY.1170.000423
ORF7b41C41FtGttTt55AY.240.002155
ORF7b41C41GTgtGgt55AY.40.000008
ORF7b41C41YtGttAt55AY.430.000022
ORF7b41C41StGttCt45AY.440.000024
ORF7b41C41STgtAgt15AY.440.000006
ORF7b41C41FtGttTt55AY.9.10.000419
ORF7b41C41FtGttTt55B.1.160.320.021459
ORF7b41C41CtgTtgC55B.1.1770.000066
ORF7b41C41GTgtGgt55B.1.177.70.000824
ORF7b41C41RTgtCgt55B.1.20.000044
ORF7b41C41StGttCt55B.1.214.20.002998
ORF7b41C41RTgtCgt55B.1.3510.000149
ORF7b41C41FtGttTt55B.1.360.00073
ORF7b41C41FtGttTt55B.1.3710.005612
ORF7b41C41FtGttTt55B.1.5230.012255
ORF7b41C41FtGttTt55B.1.617.10.000645
ORF7b41C41YtGttAt55B.1.617.20.000019
ORF7b41C41FtGttTt55P.1.140.000239
ORF7b41C41FtGttTt55P.1.150.001162
ORF7b41C41delTGT---440.222222
ORF7b41C41CtgTtgC44AY.1030.000025
ORF7b41C41YtGttAt44AY.1090.002959
ORF7b41C41FtGttTt44AY.1200.000149
ORF7b41C41delTGT---44AY.30.00004
ORF7b41C41FtGttTt44AY.39.10.000158
ORF7b41C41FtGttTt44AY.50.000083
ORF7b41C41YtGttAt44AY.50.000083
ORF7b41C41CtgTtgC44AY.750.000224
ORF7b41C41CtgTtgC44AY.9.20.000147
ORF7b41C41StGttCt44AY.9.20.000147
ORF7b41C41delTGT---44B.10.000037
ORF7b41C41YtGttAt44B.10.000037
ORF7b41C41RTgtCgt44B.10.000037
ORF7b41C41delTGT---44B.1.10.000073
ORF7b41C41delTGT---44B.1.1.2140.000222
ORF7b41C41FtGttTt44B.1.1.2160.003562
ORF7b41C41delTGT---44B.1.1.5190.000159
ORF7b41C41FtGttTt44B.1.1640.059701
ORF7b41C41WtgTtgG44B.1.177.720.013559
ORF7b41C41YtGttAt44B.1.2580.000266
ORF7b41C41FtGttTt44B.1.3950.028169
ORF7b41C41FtGttTt44B.1.3970.019417
ORF7b41C41FtGttTt44B.1.4700.005618
ORF7b41C41FtGttTt44B.1.5090.003463
ORF7b41C41FtGttTt44B.1.5890.030303
ORF7b41C41QTGTCAA33All0.000001
ORF7b41C41HTGtCAt33All0.000001
ORF7b41C41StGttCt33AY.1030.000019
ORF7b41C41FtGttTt33AY.116.10.000934
ORF7b41C41FtGttTt33AY.1190.000106
ORF7b41C41FtGttTt33AY.120.2.10.001495
ORF7b41C41CtgTtgC33AY.1210.000406
ORF7b41C41FtGttTt33AY.200.000117
ORF7b41C41delTGT---33AY.250.000018
ORF7b41C41FtGttTt33AY.260.000085
ORF7b41C41FtGttTt33AY.270.000194
ORF7b41C41FtGttTt33AY.290.000047
ORF7b41C41CtgTtgC33AY.30.00003
ORF7b41C41StGttCt33AY.320.001597
ORF7b41C41delTGT---33AY.390.000074
ORF7b41C41VTGtGTt33AY.4.20.000065
ORF7b41C41FtGttTt33AY.46.50.000595
ORF7b41C41FtGttTt33AY.470.000093
ORF7b41C41delTGT---33AY.470.000093
ORF7b41C41delTGT---33AY.480.001395
ORF7b41C41CtgTtgC33AY.650.001599
ORF7b41C41CtgTtgC33AY.740.000347
ORF7b41C41FtGttTt33AY.90.000203
ORF7b41C41FtGttTt33B.1.1.2140.000166
ORF7b41C41CtgTtgC33B.1.1.2220.000612
ORF7b41C41STgtAgt23B.1.1.250.001137
ORF7b41C41StGttCt13B.1.1.250.000569
ORF7b41C41FtGttTt33B.1.1.4320.003797
ORF7b41C41del1tgTtg-33B.1.1.70.000003
ORF7b41C41VTGtGTt33B.1.1.70.000003
ORF7b41C41GTgtGgt33B.1.1.70.000003
ORF7b41C41FtGttTt33B.1.1.700.001023
ORF7b41C41FtGttTt33B.1.110.30.002155
ORF7b41C41StGttCt33B.1.1470.002268
ORF7b41C41XtgTtgA33B.1.1600.000094
ORF7b41C41FtGttTt33B.1.177.190.004292
ORF7b41C41FtGttTt33B.1.177.210.000229
ORF7b41C41FtGttTt33B.1.177.370.081081
ORF7b41C41StGttCt33B.1.20.000026
ORF7b41C41FtGttTt33B.1.2430.000209
ORF7b41C41StGttCt33B.1.2580.0002
ORF7b41C41CtgTtgC33B.1.3510.000089
ORF7b41C41FtGttTt33B.1.4150.042857
ORF7b41C41StGttCt33B.1.499.10.333333
ORF7b41C41FtGttTt33B.1.5640.001278
ORF7b41C41WtgTtgG33B.1.617.20.000011
ORF7b41C41FtGttTt33B.1.960.056604
ORF7b41C41STgtAgt33D.20.000225
ORF7b41C41QTGTCAA33P.10.000047
ORF7b41C41HTGtCAt33P.10.000047
ORF7b41C41GTgtGgt23P.10.000032
ORF7b41C41GTgTGgA13P.10.000016
ORF7b41C41delTGT---33P.1.150.000697
ORF7b41C41StGttCt23P.20.000373
ORF7b41C41STgtAgt13P.20.000187
ORF7b41C41FtGttTt33Q.80.000495
ORF7b41C41GTgtGgt220.111111
ORF7b41C41del1TGTBD-220.111111
ORF7b41C41delTGT---22A.2.20.003378
ORF7b41C41StGttCt22A.23.10.001408
ORF7b41C41FtGttTt22AD.20.000438
ORF7b41C41delTGT---22AD.20.000438
ORF7b41C41KTGTAAA22All0
ORF7b41C41DTGtGAt22All0
ORF7b41C41NTGtAAt22All0
ORF7b41C41YtGttAt22AY.1000.000092
ORF7b41C41WtgTtgG22AY.1020.000053
ORF7b41C41FtGttTt22AY.1130.000285
ORF7b41C41delTGT---22AY.1180.000125
ORF7b41C41CtgTtgC22AY.160.000759
ORF7b41C41FtGttTt22AY.230.000139
ORF7b41C41CtgTtgC22AY.250.000012
ORF7b41C41YtGttAt22AY.260.000057
ORF7b41C41WtgTtgG22AY.30.00002
ORF7b41C41del2TGt--t22AY.300.000791
ORF7b41C41FtGttTt12AY.300.000396
ORF7b41C41FtGTtTC12AY.300.000396
ORF7b41C41FtGttTt22AY.350.000466
ORF7b41C41WtgTtgG22AY.40.000003
ORF7b41C41RTgtCgt22AY.40.000003
ORF7b41C41delTGT---22AY.4.20.000043
ORF7b41C41FtGttTt22AY.400.001929
ORF7b41C41delTGT---22AY.550.001835
ORF7b41C41FtGttTt22AY.740.000231
ORF7b41C41StGttCt22AY.740.000231
ORF7b41C41YtGttAt22AY.770.002255
ORF7b41C41delTGT---22AY.850.000854
ORF7b41C41FtGttTt22AY.9.20.000073
ORF7b41C41FtGttTt22AY.910.001461
ORF7b41C41WtgTtgG22AY.920.000575
ORF7b41C41CtgTtgC22AY.980.000158
ORF7b41C41del1tGtt-t22B.10.000018
ORF7b41C41WtgTtgG22B.10.000018
ORF7b41C41RTgtCgt22B.1.10.000036
ORF7b41C41VTGtGTt22B.1.10.000036
ORF7b41C41FtGttTt22B.1.1.10.000653
ORF7b41C41StGttCt22B.1.1.1000.08
ORF7b41C41del1tgTtg-22B.1.1.2140.000111
ORF7b41C41del2tGTt--22B.1.1.2220.000408
ORF7b41C41VTGtGTt22B.1.1.2770.001517
ORF7b41C41GTgtGgt22B.1.1.290.020619
ORF7b41C41VTGtGTt22B.1.1.290.020619
ORF7b41C41FtGttTt22B.1.1.290.020619
ORF7b41C41delTGT---22B.1.1.3060.000877
ORF7b41C41FtGttTt22B.1.1.3260.003521
ORF7b41C41WtgTtgG22B.1.1.330.000842
ORF7b41C41FtGttTt22B.1.1.3970.004505
ORF7b41C41STgtAgt22B.1.1.4320.002532
ORF7b41C41delTGT---22B.1.1260.002551
ORF7b41C41delTGT---22B.1.1770.000026
ORF7b41C41FtGttTt22B.1.177.440.001038
ORF7b41C41YtGttAt22B.1.177.770.001452
ORF7b41C41FtGttTt22B.1.177.810.000379
ORF7b41C41FtGttTt22B.1.177.820.000955
ORF7b41C41CtgTtgC22B.1.20.000018
ORF7b41C41CtgTtgC22B.1.2340.000264
ORF7b41C41FtGttTt22B.1.2390.002442
ORF7b41C41FtGttTt12B.1.2600.003344
ORF7b41C41FtGTtTC12B.1.2600.003344
ORF7b41C41delTGT---22B.1.360.000292
ORF7b41C41FtGttTt22B.1.3690.00057
ORF7b41C41delTGT---22B.1.4270.000101
ORF7b41C41StGttCt22B.1.4590.008163
ORF7b41C41del1tGtt-t22B.1.4800.004975
ORF7b41C41FtGttTt22B.1.5260.000047
ORF7b41C41FtGttTt22B.1.5880.00182
ORF7b41C41FtGttTt22B.1.5960.000174
ORF7b41C41FtGttTt22B.1.6370.000146
ORF7b41C41FtGttTt22C.360.001821
ORF7b41C41FtGttTt22D.20.00015
ORF7b41C41KTGTAAA22P.10.000032
ORF7b41C41YtGttAt22P.10.000032
ORF7b41C41NTGtAAt22P.10.000032
ORF7b41C41XtGTtAA12P.10.000016
ORF7b41C41LTGTCTC12P.10.000016
ORF7b41C41LTGtCTt12P.10.000016
ORF7b41C41XtgTtgA12P.10.000016
ORF7b41C41FtGttTt22P.1.120.000968
ORF7b41C41FtGttTt11A.10.000282
ORF7b41C41delTGT---11A.10.000282
ORF7b41C41delTGT---11A.23.10.000704
ORF7b41C41FtGttTt11A.23.10.000704
ORF7b41C41FtGttTt11AH.10.142857
ORF7b41C41ETGTGAA11All0
ORF7b41C41ITGtATt11All0
ORF7b41C41CtgTtgC11AY.10.000396
ORF7b41C41del1tgTtg-11AY.1000.000046
ORF7b41C41FtGttTt11AY.1000.000046
ORF7b41C41StGttCt11AY.1000.000046
ORF7b41C41GTgtGgt11AY.1020.000027
ORF7b41C41delTGT---11AY.1020.000027
ORF7b41C41VTGtGTt11AY.1020.000027
ORF7b41C41CtgTtgC11AY.1020.000027
ORF7b41C41YtGttAt11AY.1030.000006
ORF7b41C41RTgtCgt11AY.1030.000006
ORF7b41C41VTGtGTt11AY.1060.000335
ORF7b41C41delTGT---11AY.1080.001103
ORF7b41C41FtGttTt11AY.1080.001103
ORF7b41C41WtgTtgG11AY.110.001339
ORF7b41C41FtGttTt11AY.110.001339
ORF7b41C41CtgTtgC11AY.1140.000231
ORF7b41C41FtGttTt11AY.1150.005208
ORF7b41C41FtGttTt11AY.120.000316
ORF7b41C41delTGT---11AY.1200.000037
ORF7b41C41delTGT---11AY.1210.000135
ORF7b41C41CtgTtgC11AY.130.000161
ORF7b41C41FtGttTt11AY.140.000088
ORF7b41C41CtgTtgC11AY.190.00114
ORF7b41C41FtGttTt11AY.20.000356
ORF7b41C41STgtAgt11AY.250.000006
ORF7b41C41CtgTtgC11AY.260.000028
ORF7b41C41delTGT---11AY.260.000028
ORF7b41C41StGttCt11AY.270.000065
ORF7b41C41StGttCt11AY.280.00189
ORF7b41C41del1tgTtg-11AY.30.00001
ORF7b41C41YtGttAt11AY.30.00001
ORF7b41C41YtGttAt11AY.3.10.000085
ORF7b41C41FtGttTt11AY.3.10.000085
ORF7b41C41FtGttTt11AY.340.000097
ORF7b41C41del1tgTtg-11AY.370.000316
ORF7b41C41StGttCt11AY.380.000499
ORF7b41C41FtGttTt11AY.380.000499
ORF7b41C41YtGttAt11AY.390.000025
ORF7b41C41WtgTtgG11AY.39.10.00004
ORF7b41C41DTGtGAt11AY.40.000002
ORF7b41C41del1tGtt-t11AY.40.000002
ORF7b41C41GTgtGgt11AY.4.20.000022
ORF7b41C41YtGttAt11AY.4.20.000022
ORF7b41C41WtgTtgG11AY.4.20.000022
ORF7b41C41FtGttTt11AY.4.20.000022
ORF7b41C41delTGT---11AY.4.50.000107
ORF7b41C41FtGttTt11AY.420.00004
ORF7b41C41VTGtGTt11AY.430.000004
ORF7b41C41GTgtGgt11AY.430.000004
ORF7b41C41del1tgTtg-11AY.440.000006
ORF7b41C41VTGtGTt11AY.440.000006
ORF7b41C41RTgtCgt11AY.440.000006
ORF7b41C41GTgtGgt11AY.440.000006
ORF7b41C41FtGttTt11AY.450.000122
ORF7b41C41FtGttTt11AY.460.000104
ORF7b41C41VTGtGTt11AY.46.20.000635
ORF7b41C41WtgTtgG11AY.46.50.000198
ORF7b41C41LtGTtTG11AY.46.50.000198
ORF7b41C41StGttCt11AY.46.50.000198
ORF7b41C41VTGtGTt11AY.46.60.000072
ORF7b41C41YtGttAt11AY.470.000031
ORF7b41C41WtgTtgG11AY.50.000021
ORF7b41C41StGttCt11AY.50.000021
ORF7b41C41CtgTtgC11AY.520.000814
ORF7b41C41CtgTtgC11AY.530.000288
ORF7b41C41delTGT---11AY.560.001605
ORF7b41C41FtGttTt11AY.570.000656
ORF7b41C41delTGT---11AY.580.000907
ORF7b41C41CtgTtgC11AY.580.000907
ORF7b41C41FtGttTt11AY.60.000041
ORF7b41C41StGttCt11AY.610.000105
ORF7b41C41delTGT---11AY.610.000105
ORF7b41C41FtGttTt11AY.610.000105
ORF7b41C41CtgTtgC11AY.670.000464
ORF7b41C41delTGT---11AY.670.000464
ORF7b41C41FtGttTt11AY.690.000187
ORF7b41C41FtGttTt11AY.70.000196
ORF7b41C41delTGT---11AY.710.000475
ORF7b41C41CtgTtgC11AY.710.000475
ORF7b41C41StGttCt11AY.710.000475
ORF7b41C41delTGT---11AY.750.000056
ORF7b41C41FtGttTt11AY.75.10.00018
ORF7b41C41XtGTtAA11AY.75.10.00018
ORF7b41C41del2TGT--S11AY.840.000437
ORF7b41C41StGttCt11AY.950.000761
ORF7b41C41del2tGTt--11AY.980.000079
ORF7b41C41YtGttAt11AY.980.000079
ORF7b41C41FtGttTt11AY.98.10.000048
ORF7b41C41delTGT---11AY.990.001049
ORF7b41C41FtGttTt11B0.000128
ORF7b41C41XtGTtAA11B.10.000009
ORF7b41C41VTGtGTt11B.10.000009
ORF7b41C41GTgtGgt11B.10.000009
ORF7b41C41LTGtCTt11B.1.10.000018
ORF7b41C41del1tgTtg-11B.1.10.000018
ORF7b41C41YtGttAt11B.1.10.000018
ORF7b41C41XtgTtgA11B.1.10.000018
ORF7b41C41GTgtGgt11B.1.10.000018
ORF7b41C41YtGttAt11B.1.1.1860.003436
ORF7b41C41YtGttAt11B.1.1.2070.001182
ORF7b41C41FtGttTt11B.1.1.2070.001182
ORF7b41C41CtgTtgC11B.1.1.2140.000055
ORF7b41C41delTGT---11B.1.1.2160.00089
ORF7b41C41FtGttTt11B.1.1.2200.001859
ORF7b41C41del1tgTtg-11B.1.1.2220.000204
ORF7b41C41YtGttAt11B.1.1.2220.000204
ORF7b41C41del1tGtt-t11B.1.1.2320.001815
ORF7b41C41FtGttTt11B.1.1.250.000569
ORF7b41C41YtGttAt11B.1.1.250.000569
ORF7b41C41FtGttTt11B.1.1.2630.001558
ORF7b41C41del2tGTt--11B.1.1.2770.000759
ORF7b41C41RTgtCgt11B.1.1.2790.001121
ORF7b41C41delTGT---11B.1.1.2840.000107
ORF7b41C41FtGttTt11B.1.1.2840.000107
ORF7b41C41StGttCt11B.1.1.2980.000862
ORF7b41C41FtGttTt11B.1.1.3050.003861
ORF7b41C41FtGttTt11B.1.1.3070.002532
ORF7b41C41FtGttTt11B.1.1.3120.001912
ORF7b41C41CtgTtgC11B.1.1.3170.000412
ORF7b41C41FtGttTt11B.1.1.3170.000412
ORF7b41C41WtgTtgG11B.1.1.3170.000412
ORF7b41C41FtGttTt11B.1.1.3180.000302
ORF7b41C41STgtAgt11B.1.1.330.000421
ORF7b41C41CtgTtgC11B.1.1.330.000421
ORF7b41C41FtGttTt11B.1.1.3470.018182
ORF7b41C41FtGttTt11B.1.1.3590.027778
ORF7b41C41FtGttTt11B.1.1.390.00051
ORF7b41C41FtGttTt11B.1.1.3960.045455
ORF7b41C41YtGttAt11B.1.1.3960.045455
ORF7b41C41STgtAgt11B.1.1.3980.003226
ORF7b41C41delTGT---11B.1.1.440.00241
ORF7b41C41FtGttTt11B.1.1.4480.002033
ORF7b41C41STgtAgt11B.1.1.500.000679
ORF7b41C41FtGttTt11B.1.1.5070.008696
ORF7b41C41FtGttTt11B.1.1.5120.028571
ORF7b41C41WtgTtgG11B.1.1.5190.00004
ORF7b41C41CtgTtgC11B.1.1.5190.00004
ORF7b41C41FtGttTt11B.1.1.5230.001563
ORF7b41C41RTgtCgt11B.1.1.630.000386
ORF7b41C41XtgTtgA11B.1.1.70.000001
ORF7b41C41FtGttTt11B.1.1.830.00271
ORF7b41C41FtGttTt11B.1.1.880.071429
ORF7b41C41FtGttTt11B.1.1050.009615
ORF7b41C41del2tGTt--11B.1.110.30.000718
ORF7b41C41YtGttAt11B.1.1260.001276
ORF7b41C41del1TgTAg-11B.1.1260.001276
ORF7b41C41RTgTAgA11B.1.1260.001276
ORF7b41C41GTgtGgt11B.1.160.120.00641
ORF7b41C41VTGtGTt11B.1.160.120.00641
ORF7b41C41FtGttTt11B.1.160.120.00641
ORF7b41C41CtgTtgC11B.1.1640.014925
ORF7b41C41RTgtCgt11B.1.1770.000013
ORF7b41C41delTGT---11B.1.177.150.000631
ORF7b41C41FtGttTt11B.1.177.230.003236
ORF7b41C41CtgTtgC11B.1.177.320.00135
ORF7b41C41YtGttAt11B.1.177.440.000519
ORF7b41C41WtgTtgG11B.1.177.580.001332
ORF7b41C41FtGttTt11B.1.177.600.000218
ORF7b41C41VTGtGTt11B.1.177.620.001192
ORF7b41C41WtgTtgG11B.1.177.630.002703
ORF7b41C41FtGttTt11B.1.177.650.000665
ORF7b41C41delTGT---11B.1.177.70.000165
ORF7b41C41YtGttAt11B.1.177.720.00339
ORF7b41C41delTGT---11B.1.177.830.001481
ORF7b41C41delTGT---11B.1.1950.005025
ORF7b41C41VTGtGTt11B.1.20.000009
ORF7b41C41GTgtGgt11B.1.20.000009
ORF7b41C41WtgTtgG11B.1.20.000009
ORF7b41C41del2TGt--t11B.1.20.000009
ORF7b41C41StGttCt11B.1.2060.000816
ORF7b41C41delTGT---11B.1.2210.000071
ORF7b41C41FtGttTt11B.1.2320.000537
ORF7b41C41delTGT---11B.1.2340.000132
ORF7b41C41RTgtCgt11B.1.2340.000132
ORF7b41C41STgtAgt11B.1.2370.004975
ORF7b41C41delTGT---11B.1.2580.000067
ORF7b41C41FtGttTt11B.1.258.170.000104
ORF7b41C41del1tGtt-t11B.1.258.30.001675
ORF7b41C41VTGtGTt11B.1.3110.000275
ORF7b41C41FtGttTt11B.1.3150.006061
ORF7b41C41RTgtCgt11B.1.3430.020833
ORF7b41C41StGttCt11B.1.3510.00003
ORF7b41C41FtGttTt11B.1.351.50.0006
ORF7b41C41YtGttAt11B.1.360.000146
ORF7b41C41CtgTtgC11B.1.36.100.004785
ORF7b41C41YtGttAt11B.1.36.290.000517
ORF7b41C41StGttCt11B.1.36.290.000517
ORF7b41C41StGttCt11B.1.3670.000792
ORF7b41C41FtGttTt11B.1.3670.000792
ORF7b41C41delTGT---11B.1.3690.000285
ORF7b41C41STgtAgt11B.1.3710.001122
ORF7b41C41FtGttTt11B.1.3750.00082
ORF7b41C41delTGT---11B.1.4000.000429
ORF7b41C41FtGttTt11B.1.4040.001302
ORF7b41C41GTgtGgt11B.1.4220.000812
ORF7b41C41FtGttTt11B.1.4220.000812
ORF7b41C41VTGtGTt11B.1.4220.000812
ORF7b41C41FtGttTt11B.1.4260.001009
ORF7b41C41RTgtCgt11B.1.4270.00005
ORF7b41C41FtGttTt11B.1.4280.00102
ORF7b41C41RTgtCgt11B.1.4290.000024
ORF7b41C41delTGT---11B.1.4290.000024
ORF7b41C41FtGttTt11B.1.4290.000024
ORF7b41C41FtGttTt11B.1.4560.003268
ORF7b41C41FtGttTt11B.1.4590.004082
ORF7b41C41CtgTtgC11B.1.466.20.000391
ORF7b41C41delTGT---11B.1.4680.005714
ORF7b41C41delTGT---11B.1.4990.00105
ORF7b41C41StGttCt11B.1.5080.025641
ORF7b41C41delTGT---11B.1.5090.000866
ORF7b41C41CtgTtgC11B.1.5260.000024
ORF7b41C41XtgTtgA11B.1.5330.009615
ORF7b41C41FtGttTt11B.1.5610.000397
ORF7b41C41CtgTtgC11B.1.5640.000426
ORF7b41C41GTgtGgt11B.1.5650.00081
ORF7b41C41YtGttAt11B.1.5650.00081
ORF7b41C41FtGttTt11B.1.575.10.002439
ORF7b41C41delTGT---11B.1.5820.000491
ORF7b41C41FtGttTt11B.1.5820.000491
ORF7b41C41CtgTtgC11B.1.5950.000261
ORF7b41C41FtGttTt11B.1.5950.000261
ORF7b41C41FtGttTt11B.1.6090.000479
ORF7b41C41del1tGtt-t11B.1.617.10.000129
ORF7b41C41CtgTtgC11B.1.617.10.000129
ORF7b41C41VTGTGTC11B.1.617.10.000129
ORF7b41C41RTgtCgt11B.1.617.20.000004
ORF7b41C41LTGtCTt11B.1.617.20.000004
ORF7b41C41StGttCt11B.1.6270.00202
ORF7b41C41StGttCt11B.1.6280.000352
ORF7b41C41FtGttTt11B.1.6280.000352
ORF7b41C41delTGT---11B.1.6300.005236
ORF7b41C41FtGttTt11B.1.6320.006711
ORF7b41C41FtGttTt11B.120.00641
ORF7b41C41RTgtCgt11B.40.002208
ORF7b41C41StGttCt11C.160.00106
ORF7b41C41FtGttTt11C.160.00106
ORF7b41C41CtgTtgC11C.160.00106
ORF7b41C41StGttCt11C.230.005814
ORF7b41C41delTGT---11C.260.007353
ORF7b41C41delTGT---11C.370.000116
ORF7b41C41StGttCt11C.370.000116
ORF7b41C41YtGttAt11C.37.10.002618
ORF7b41C41RTgtCgt11D.20.000075
ORF7b41C41FtGttTt11N.50.001767
ORF7b41C41DTGtGAt11P.10.000016
ORF7b41C41ETGTGAA11P.10.000016
ORF7b41C41ITGtATt11P.10.000016
ORF7b41C41YtGttAt11P.1.120.000484
ORF7b41C41delTGT---11P.1.140.000048
ORF7b41C41StGttCt11P.1.150.000232
ORF7b41C41FtGttTt11P.20.000187
ORF7b41C41FtGttTt11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.