CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 4 | L4F | nonsyn | Ctt | Ttt | 2432 | 2432 | 1 | 27765-27767 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 4 | L4F | Ctt | Ttt | 2432 | 2432 | All | 0.000465 |
ORF7b | 4 | L4F | Ctt | Ttt | 1138 | 1138 | B.1.1.7 | 0.001019 |
ORF7b | 4 | L4F | Ctt | Ttt | 96 | 96 | P.1 | 0.001512 |
ORF7b | 4 | L4F | Ctt | Ttt | 93 | 93 | B.1.2 | 0.000819 |
ORF7b | 4 | L4F | Ctt | Ttt | 88 | 88 | B.1.177 | 0.001159 |
ORF7b | 4 | L4F | Ctt | Ttt | 81 | 81 | B.1.617.2 | 0.000305 |
ORF7b | 4 | L4F | Ctt | Ttt | 77 | 77 | AY.4.2 | 0.00167 |
ORF7b | 4 | L4F | Ctt | Ttt | 68 | 68 | B.1 | 0.000623 |
ORF7b | 4 | L4F | Ctt | Ttt | 62 | 62 | B.1.1.274 | 0.313131 |
ORF7b | 4 | L4F | Ctt | Ttt | 46 | 46 | B.1.1 | 0.000834 |
ORF7b | 4 | L4F | Ctt | Ttt | 42 | 42 | B.1.429 | 0.000988 |
ORF7b | 4 | L4F | Ctt | Ttt | 41 | 41 | AY.4 | 0.000064 |
ORF7b | 4 | L4F | Ctt | Ttt | 35 | 35 | AY.43 | 0.000155 |
ORF7b | 4 | L4F | Ctt | Ttt | 27 | 27 | Q.3 | 0.003916 |
ORF7b | 4 | L4F | Ctt | Ttt | 26 | 26 | B.1.243 | 0.001809 |
ORF7b | 4 | L4F | Ctt | Ttt | 19 | 19 | B.1.526 | 0.000447 |
ORF7b | 4 | L4F | Ctt | Ttt | 18 | 18 | AY.61 | 0.001886 |
ORF7b | 4 | L4F | Ctt | Ttt | 18 | 18 | B.1.36 | 0.002626 |
ORF7b | 4 | L4F | Ctt | Ttt | 17 | 17 | A.2.5 | 0.008483 |
ORF7b | 4 | L4F | Ctt | Ttt | 15 | 15 | B.1.177.8 | 0.011287 |
ORF7b | 4 | L4F | Ctt | Ttt | 15 | 15 | B.1.177.86 | 0.002752 |
ORF7b | 4 | L4F | Ctt | Ttt | 14 | 14 | AY.3 | 0.000139 |
ORF7b | 4 | L4F | Ctt | Ttt | 14 | 14 | AY.9.2 | 0.000514 |
ORF7b | 4 | L4F | Ctt | Ttt | 12 | 12 | AY.29 | 0.000189 |
ORF7b | 4 | L4F | Ctt | Ttt | 12 | 12 | C.37 | 0.001393 |
ORF7b | 4 | L4F | Ctt | Ttt | 12 | 12 | R.1 | 0.00108 |
ORF7b | 4 | L4F | Ctt | Ttt | 11 | 11 | AY.103 | 0.000068 |
ORF7b | 4 | L4F | Ctt | Ttt | 11 | 11 | B.1.1.519 | 0.000437 |
ORF7b | 4 | L4F | Ctt | Ttt | 11 | 11 | B.1.160 | 0.000343 |
ORF7b | 4 | L4F | Ctt | Ttt | 10 | 10 | AY.25 | 0.00006 |
ORF7b | 4 | L4F | Ctt | Ttt | 10 | 10 | B.1.1.43 | 0.149254 |
ORF7b | 4 | L4F | Ctt | Ttt | 10 | 10 | B.1.351 | 0.000297 |
ORF7b | 4 | L4F | Ctt | Ttt | 9 | 9 | AY.102 | 0.000239 |
ORF7b | 4 | L4F | Ctt | Ttt | 9 | 9 | AY.39 | 0.000222 |
ORF7b | 4 | L4F | Ctt | Ttt | 8 | 8 | AY.44 | 0.000049 |
ORF7b | 4 | L4F | Ctt | Ttt | 8 | 8 | B.1.1.219 | 0.04 |
ORF7b | 4 | L4F | Ctt | Ttt | 8 | 8 | B.1.177.4 | 0.001688 |
ORF7b | 4 | L4F | Ctt | Ttt | 7 | 7 | D.2 | 0.000525 |
ORF7b | 4 | L4F | Ctt | Ttt | 6 | 6 | AY.39.1 | 0.000238 |
ORF7b | 4 | L4F | Ctt | Ttt | 6 | 6 | B.1.221 | 0.000426 |
ORF7b | 4 | L4F | Ctt | Ttt | 6 | 6 | B.1.505 | 0.026316 |
ORF7b | 4 | L4F | Ctt | Ttt | 6 | 6 | B.1.596 | 0.000523 |
ORF7b | 4 | L4F | Ctt | Ttt | 5 | 5 | AD.2 | 0.001095 |
ORF7b | 4 | L4F | Ctt | Ttt | 5 | 5 | AY.121 | 0.000677 |
ORF7b | 4 | L4F | Ctt | Ttt | 5 | 5 | AY.20 | 0.000194 |
ORF7b | 4 | L4F | Ctt | Ttt | 5 | 5 | B.1.1.311 | 0.001791 |
ORF7b | 4 | L4F | Ctt | Ttt | 5 | 5 | B.1.351.3 | 0.004382 |
ORF7b | 4 | L4F | Ctt | Ttt | 5 | 5 | P.1.10 | 0.001347 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | A | 0.001548 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | AY.42 | 0.000161 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | B.1.1.294 | 0.005063 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | B.1.160.12 | 0.025641 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | B.1.234 | 0.000528 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | B.1.400 | 0.001716 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | B.1.609 | 0.001918 |
ORF7b | 4 | L4F | Ctt | Ttt | 4 | 4 | P.1.14 | 0.000191 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | AY.47 | 0.000093 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | AY.5 | 0.000062 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | AY.75 | 0.000168 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | AY.9.1 | 0.000251 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | B.1.1.37 | 0.000579 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | B.1.1.370 | 0.037975 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | B.1.177.44 | 0.001557 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | B.1.241 | 0.002435 |
ORF7b | 4 | L4F | Ctt | Ttt | 3 | 3 | P.1.17 | 0.000485 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | 0.111111 | |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.100 | 0.000092 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.27 | 0.000129 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.34.1 | 0.00102 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.36 | 0.000296 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.4.3 | 0.001684 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.6 | 0.000082 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.75.1 | 0.000361 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.87 | 0.001665 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | AY.98 | 0.000158 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.1.348 | 0.001592 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.1.377 | 0.002762 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.1.523 | 0.003125 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.177.69 | 0.002967 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.245 | 0.0625 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.311 | 0.000549 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.36.8 | 0.002 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.361 | 0.002577 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.409 | 0.001563 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.427 | 0.000101 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.499 | 0.002101 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.509 | 0.001732 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.621 | 0.000177 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | B.1.625 | 0.004706 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | P.1.12 | 0.000968 |
ORF7b | 4 | L4F | Ctt | Ttt | 2 | 2 | P.1.7 | 0.000639 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | A.18 | 0.05 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | A.23.1 | 0.000704 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | A.27 | 0.001656 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | A.6 | 0.005128 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AV.1 | 0.005051 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.101 | 0.00049 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.119 | 0.000035 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.64 | 0.000595 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.7.1 | 0.000113 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.88 | 0.000884 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.163 | 0.007634 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.297 | 0.002237 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.349 | 0.010309 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.440 | 0.011765 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.12 | 0.008 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.265 | 0.001271 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.279 | 0.000514 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.336 | 0.002439 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.371 | 0.001122 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.428 | 0.00102 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | B.1.620 | 0.000946 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | C.14 | 0.004329 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | C.39 | 0.018868 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | P.1.4 | 0.000977 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | Q.1 | 0.000126 |
ORF7b | 4 | L4F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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