CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 39

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7b	39	E39X		nonsyn	Gaa	Taa	12977	12976	0.999923	27870-27872
ORF7b	39	E39X		nonsyn	GAa	TGa	12977	1	0.0000770594	27870-27872
ORF7b	39	E39del		del	GAA	---	428	428	1	27870-27872
ORF7b	39	E39Q		nonsyn	Gaa	Caa	403	403	1	27870-27872
ORF7b	39	E39G		nonsyn	gAa	gGa	247	245	0.991903	27870-27872
ORF7b	39	E39G		nonsyn	gAA	gGT	247	1	0.00404858	27870-27872
ORF7b	39	E39G		nonsyn	gAA	gGG	247	1	0.00404858	27870-27872
ORF7b	39	E39D		nonsyn	gaA	gaT	184	138	0.75	27870-27872
ORF7b	39	E39D		nonsyn	gaA	gaC	184	46	0.25	27870-27872
ORF7b	39	E39K		nonsyn	Gaa	Aaa	129	129	1	27870-27872
ORF7b	39	E39V		nonsyn	gAa	gTa	120	119	0.991667	27870-27872
ORF7b	39	E39V		nonsyn	gAA	gTG	120	1	0.00833333	27870-27872
ORF7b	39	E39E		syn	gaA	gaG	107	107	1	27870-27872
ORF7b	39	E39del1		del	Gaa	-aa	89	86	0.966292	27870-27872
ORF7b	39	E39del1		del	gAa	g-a	89	2	0.0224719	27870-27872
ORF7b	39	E39del1		del	GaA	-aG	89	1	0.011236	27870-27872
ORF7b	39	E39A		nonsyn	gAa	gCa	34	29	0.852941	27870-27872
ORF7b	39	E39A		nonsyn	gAA	gCT	34	5	0.147059	27870-27872
ORF7b	39	E39S		nonsyn	GAA	TCT	10	5	0.5	27870-27872
ORF7b	39	E39S		nonsyn	GAa	TCa	10	4	0.4	27870-27872
ORF7b	39	E39S		nonsyn	GAA	AGT	10	1	0.1	27870-27872
ORF7b	39	E39del2		del	GAa	--a	6	3	0.5	27870-27872
ORF7b	39	E39del2		del	gAA	g--	6	2	0.333333	27870-27872
ORF7b	39	E39del2		del	GAA	--N	6	1	0.166667	27870-27872
ORF7b	39	E39Y		nonsyn	GaA	TaT	4	4	1	27870-27872
ORF7b	39	E39R		nonsyn	GAa	CGa	3	2	0.666667	27870-27872
ORF7b	39	E39R		nonsyn	GAa	AGa	3	1	0.333333	27870-27872
ORF7b	39	E39L		nonsyn	GAa	CTa	2	2	1	27870-27872
ORF7b	39	E39H		nonsyn	GaA	CaT	2	2	1	27870-27872
ORF7b	39	E39T		nonsyn	GAA	ACT	2	1	0.5	27870-27872
ORF7b	39	E39T		nonsyn	GAa	ACa	2	1	0.5	27870-27872
ORF7b	39	E39C		nonsyn	GAA	TGT	1	1	1	27870-27872
ORF7b	39	E39N		nonsyn	GaA	AaT	1	1	1	27870-27872

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7b	39	E39X	Gaa	Taa	12976	12977	All	0.002482
ORF7b	39	E39X	GAa	TGa	1	12977	All	0
ORF7b	39	E39X	Gaa	Taa	5410	5410	B.1.177.86	0.992478
ORF7b	39	E39X	Gaa	Taa	2928	2928	B.1.351	0.087039
ORF7b	39	E39X	Gaa	Taa	643	643	B.1.1.7	0.000576
ORF7b	39	E39X	Gaa	Taa	569	569	AY.56	0.913323
ORF7b	39	E39X	Gaa	Taa	491	491	B.1.470	0.689607
ORF7b	39	E39del	GAA	---	428	428	All	0.000082
ORF7b	39	E39Q	Gaa	Caa	403	403	All	0.000077
ORF7b	39	E39X	Gaa	Taa	328	328	B.1	0.003004
ORF7b	39	E39X	Gaa	Taa	326	326	B.1.617.2	0.001228
ORF7b	39	E39G	gAa	gGa	245	247	All	0.000047
ORF7b	39	E39G	gAA	gGG	1	247	All	0
ORF7b	39	E39G	gAA	gGT	1	247	All	0
ORF7b	39	E39X	Gaa	Taa	185	185	AY.4	0.000288
ORF7b	39	E39D	gaA	gaT	138	184	All	0.000026
ORF7b	39	E39D	gaA	gaC	46	184	All	0.000009
ORF7b	39	E39X	Gaa	Taa	179	179	AY.44	0.00109
ORF7b	39	E39X	Gaa	Taa	154	154	B.1.160.17	0.261905
ORF7b	39	E39G	gAa	gGa	145	145	B.1.1.7	0.00013
ORF7b	39	E39X	Gaa	Taa	132	132	AY.43	0.000585
ORF7b	39	E39K	Gaa	Aaa	129	129	All	0.000025
ORF7b	39	E39V	gAa	gTa	119	120	All	0.000023
ORF7b	39	E39V	gAA	gTG	1	120	All	0
ORF7b	39	E39X	Gaa	Taa	119	119	AZ.1	0.103209
ORF7b	39	E39E	gaA	gaG	107	107	All	0.00002
ORF7b	39	E39del	GAA	---	106	106	B.1.1.7	0.000095
ORF7b	39	E39del1	Gaa	-aa	86	89	All	0.000016
ORF7b	39	E39del1	gAa	g-a	2	89	All	0
ORF7b	39	E39del1	GaA	-aG	1	89	All	0
ORF7b	39	E39X	Gaa	Taa	75	75	AY.121	0.010149
ORF7b	39	E39X	Gaa	Taa	69	69	AY.117	0.005832
ORF7b	39	E39Q	Gaa	Caa	63	63	AY.47	0.00196
ORF7b	39	E39del	GAA	---	62	62	AY.4	0.000096
ORF7b	39	E39X	Gaa	Taa	61	61	B.1.36	0.0089
ORF7b	39	E39D	gaA	gaT	57	58	B.1	0.000522
ORF7b	39	E39D	gaA	gaC	1	58	B.1	0.000009
ORF7b	39	E39del1	Gaa	-aa	58	58	B.1.1.355	0.892308
ORF7b	39	E39X	Gaa	Taa	55	55	B.1.177	0.000724
ORF7b	39	E39X	Gaa	Taa	54	54	B.1.2	0.000475
ORF7b	39	E39X	Gaa	Taa	53	53	B.1.1	0.000961
ORF7b	39	E39Q	Gaa	Caa	53	53	B.1.1.7	0.000047
ORF7b	39	E39K	Gaa	Aaa	52	52	B.1.1.7	0.000047
ORF7b	39	E39del	GAA	---	49	49	B.1.243	0.00341
ORF7b	39	E39X	Gaa	Taa	47	47	AY.103	0.000292
ORF7b	39	E39Q	Gaa	Caa	47	47	AY.118	0.002944
ORF7b	39	E39G	gAa	gGa	45	45	B.1.2	0.000396
ORF7b	39	E39X	Gaa	Taa	44	44	P.1	0.000693
ORF7b	39	E39X	Gaa	Taa	42	42	B.1.1.318	0.012674
ORF7b	39	E39X	Gaa	Taa	38	38	AY.98	0.003002
ORF7b	39	E39del	GAA	---	37	37	AY.29	0.000584
ORF7b	39	E39E	gaA	gaG	37	37	AY.4	0.000058
ORF7b	39	E39X	Gaa	Taa	36	36	B.1.36.29	0.018624
ORF7b	39	E39A	gAa	gCa	29	34	All	0.000006
ORF7b	39	E39A	gAA	gCT	5	34	All	0.000001
ORF7b	39	E39X	Gaa	Taa	34	34	B.1.258	0.002263
ORF7b	39	E39D	gaA	gaT	32	33	B.1.258	0.00213
ORF7b	39	E39D	gaA	gaC	1	33	B.1.258	0.000067
ORF7b	39	E39X	Gaa	Taa	32	32	AY.9	0.002163
ORF7b	39	E39X	Gaa	Taa	31	31	B.1.1.317	0.012762
ORF7b	39	E39V	gAa	gTa	30	30	B.1.617.2	0.000113
ORF7b	39	E39V	gAa	gTa	29	30	P.1	0.000457
ORF7b	39	E39V	gAA	gTG	1	30	P.1	0.000016
ORF7b	39	E39X	Gaa	Taa	28	28	AY.26	0.000793
ORF7b	39	E39X	Gaa	Taa	28	28	AY.34	0.002715
ORF7b	39	E39Q	Gaa	Caa	27	27	AY.25	0.000162
ORF7b	39	E39X	Gaa	Taa	27	27	AY.25	0.000162
ORF7b	39	E39Q	Gaa	Caa	27	27	B.1.1.519	0.001072
ORF7b	39	E39X	Gaa	Taa	26	26	AY.29	0.00041
ORF7b	39	E39Q	Gaa	Caa	26	26	AY.75	0.001457
ORF7b	39	E39X	Gaa	Taa	23	23	AY.3	0.000229
ORF7b	39	E39Q	Gaa	Caa	23	23	B.1.2	0.000203
ORF7b	39	E39V	gAa	gTa	22	22	B.1.2	0.000194
ORF7b	39	E39X	Gaa	Taa	18	18	AY.42	0.000724
ORF7b	39	E39X	Gaa	Taa	17	18	B.1.160	0.00053
ORF7b	39	E39X	GAa	TGa	1	18	B.1.160	0.000031
ORF7b	39	E39X	Gaa	Taa	18	18	B.1.177.58	0.023968
ORF7b	39	E39del	GAA	---	17	17	B	0.002173
ORF7b	39	E39X	Gaa	Taa	16	16	B.1.1.303	0.044199
ORF7b	39	E39D	gaA	gaC	15	15	AY.100	0.00069
ORF7b	39	E39X	Gaa	Taa	15	15	AY.27	0.000971
ORF7b	39	E39X	Gaa	Taa	15	15	B.1.351.2	0.004539
ORF7b	39	E39X	Gaa	Taa	14	14	AY.4.2.1	0.002086
ORF7b	39	E39Q	Gaa	Caa	14	14	B.1	0.000128
ORF7b	39	E39E	gaA	gaG	14	14	B.1.617.2	0.000053
ORF7b	39	E39X	Gaa	Taa	14	14	B.1.621	0.001239
ORF7b	39	E39D	gaA	gaT	13	13	AY.3	0.000129
ORF7b	39	E39X	Gaa	Taa	13	13	AY.33	0.000868
ORF7b	39	E39X	Gaa	Taa	13	13	AY.5	0.000268
ORF7b	39	E39Q	Gaa	Caa	13	13	AY.56	0.020867
ORF7b	39	E39X	Gaa	Taa	13	13	AY.9.1	0.001088
ORF7b	39	E39X	Gaa	Taa	13	13	B.1.429	0.000306
ORF7b	39	E39X	Gaa	Taa	13	13	C.35	0.010062
ORF7b	39	E39A	gAa	gCa	8	13	P.1	0.000126
ORF7b	39	E39A	gAA	gCT	5	13	P.1	0.000079
ORF7b	39	E39X	Gaa	Taa	12	12	B.1.1.519	0.000477
ORF7b	39	E39del	GAA	---	12	12	B.1.2	0.000106
ORF7b	39	E39del1	Gaa	-aa	12	12	B.1.531	1
ORF7b	39	E39D	gaA	gaC	11	12	B.1.617.2	0.000041
ORF7b	39	E39D	gaA	gaT	1	12	B.1.617.2	0.000004
ORF7b	39	E39Q	Gaa	Caa	11	11	AY.103	0.000068
ORF7b	39	E39X	Gaa	Taa	11	11	AY.9.2	0.000404
ORF7b	39	E39X	Gaa	Taa	11	11	B.1.243	0.000765
ORF7b	39	E39S	GAA	TCT	5	10	All	0.000001
ORF7b	39	E39S	GAa	TCa	4	10	All	0.000001
ORF7b	39	E39S	GAA	AGT	1	10	All	0
ORF7b	39	E39E	gaA	gaG	10	10	AY.20	0.000389
ORF7b	39	E39X	Gaa	Taa	10	10	AY.4.2	0.000217
ORF7b	39	E39X	Gaa	Taa	10	10	B.1.351.5	0.005995
ORF7b	39	E39S	GAA	TCT	5	10	P.1	0.000079
ORF7b	39	E39S	GAa	TCa	4	10	P.1	0.000063
ORF7b	39	E39S	GAA	AGT	1	10	P.1	0.000016
ORF7b	39	E39X	Gaa	Taa	9	9	AY.98.1	0.000436
ORF7b	39	E39X	Gaa	Taa	9	9	B.1.221	0.000639
ORF7b	39	E39K	Gaa	Aaa	9	9	B.1.232	0.004836
ORF7b	39	E39X	Gaa	Taa	9	9	B.1.396	0.006351
ORF7b	39	E39X	Gaa	Taa	9	9	P.1.7	0.002874
ORF7b	39	E39X	Gaa	Taa	8	8	AY.116	0.002294
ORF7b	39	E39Q	Gaa	Caa	8	8	AY.13	0.001288
ORF7b	39	E39del	GAA	---	8	8	AY.44	0.000049
ORF7b	39	E39del1	Gaa	-aa	8	8	B.1.1	0.000145
ORF7b	39	E39E	gaA	gaG	8	8	B.1.1.7	0.000007
ORF7b	39	E39X	Gaa	Taa	8	8	B.1.36.18	0.003361
ORF7b	39	E39X	Gaa	Taa	8	8	N.5	0.014134
ORF7b	39	E39del	GAA	---	7	7	AY.103	0.000043
ORF7b	39	E39X	Gaa	Taa	7	7	AY.118	0.000439
ORF7b	39	E39X	Gaa	Taa	7	7	AY.20	0.000272
ORF7b	39	E39Q	Gaa	Caa	7	7	AY.4	0.000011
ORF7b	39	E39del	GAA	---	7	7	AY.43	0.000031
ORF7b	39	E39del	GAA	---	7	7	B.1.1.265	0.022082
ORF7b	39	E39X	Gaa	Taa	7	7	B.1.1.306	0.003069
ORF7b	39	E39X	Gaa	Taa	7	7	B.1.1.385	0.03125
ORF7b	39	E39X	Gaa	Taa	7	7	B.1.177.4	0.001477
ORF7b	39	E39X	Gaa	Taa	7	7	B.1.240	0.001509
ORF7b	39	E39X	Gaa	Taa	7	7	B.1.36.35	0.018229
ORF7b	39	E39X	Gaa	Taa	7	7	B.1.526	0.000165
ORF7b	39	E39X	Gaa	Taa	7	7	B.1.596	0.00061
ORF7b	39	E39G	gAa	gGa	7	7	B.1.621	0.00062
ORF7b	39	E39X	Gaa	Taa	7	7	B.4.1	0.132075
ORF7b	39	E39del2	GAa	--a	3	6	All	0.000001
ORF7b	39	E39del2	gAA	g--	2	6	All	0
ORF7b	39	E39del2	GAA	--N	1	6	All	0
ORF7b	39	E39X	Gaa	Taa	6	6	AY.119	0.000212
ORF7b	39	E39del	GAA	---	6	6	AY.29.1	0.001323
ORF7b	39	E39G	gAa	gGa	6	6	AY.57	0.003937
ORF7b	39	E39X	Gaa	Taa	6	6	AY.99.2	0.000553
ORF7b	39	E39X	Gaa	Taa	6	6	B.1.214.2	0.003597
ORF7b	39	E39E	gaA	gaG	6	6	B.1.258.17	0.000624
ORF7b	39	E39X	Gaa	Taa	6	6	C.37	0.000696
ORF7b	39	E39D	gaA	gaT	6	6	P.1	0.000095
ORF7b	39	E39X	Gaa	Taa	6	6	P.1.1	0.001906
ORF7b	39	E39D	gaA	gaT	5	5	AY.102	0.000133
ORF7b	39	E39D	gaA	gaT	4	5	AY.25	0.000024
ORF7b	39	E39D	gaA	gaC	1	5	AY.25	0.000006
ORF7b	39	E39D	gaA	gaC	5	5	AY.29	0.000079
ORF7b	39	E39K	Gaa	Aaa	5	5	AY.4	0.000008
ORF7b	39	E39Q	Gaa	Caa	5	5	AY.44	0.00003
ORF7b	39	E39X	Gaa	Taa	5	5	AY.45	0.000608
ORF7b	39	E39X	Gaa	Taa	5	5	AY.46.6	0.000361
ORF7b	39	E39X	Gaa	Taa	5	5	AY.53	0.001438
ORF7b	39	E39X	Gaa	Taa	5	5	B.1.1.50	0.003394
ORF7b	39	E39X	Gaa	Taa	5	5	B.1.177.7	0.000824
ORF7b	39	E39Q	Gaa	Caa	5	5	B.1.240	0.001078
ORF7b	39	E39X	Gaa	Taa	5	5	B.1.427	0.000252
ORF7b	39	E39del	GAA	---	5	5	B.1.526	0.000118
ORF7b	39	E39X	Gaa	Taa	5	5	B.1.617.1	0.000645
ORF7b	39	E39G	gAa	gGa	5	5	B.1.617.1	0.000645
ORF7b	39	E39Q	Gaa	Caa	5	5	B.1.617.2	0.000019
ORF7b	39	E39del	GAA	---	5	5	B.1.617.2	0.000019
ORF7b	39	E39X	Gaa	Taa	5	5	B.1.620	0.00473
ORF7b	39	E39K	Gaa	Aaa	5	5	D.2	0.000375
ORF7b	39	E39G	gAa	gGa	3	5	P.1	0.000047
ORF7b	39	E39G	gAA	gGT	1	5	P.1	0.000016
ORF7b	39	E39G	gAA	gGG	1	5	P.1	0.000016
ORF7b	39	E39del	GAA	---	4	4		0.222222
ORF7b	39	E39X	Gaa	Taa	4	4	A.2.5	0.001996
ORF7b	39	E39X	Gaa	Taa	4	4	A.23.1	0.002817
ORF7b	39	E39Y	GaA	TaT	4	4	All	0.000001
ORF7b	39	E39X	Gaa	Taa	4	4	AY.10	0.00212
ORF7b	39	E39X	Gaa	Taa	4	4	AY.120	0.000149
ORF7b	39	E39X	Gaa	Taa	4	4	AY.23	0.000279
ORF7b	39	E39del	GAA	---	4	4	AY.25	0.000024
ORF7b	39	E39G	gAa	gGa	4	4	AY.25	0.000024
ORF7b	39	E39del	GAA	---	4	4	AY.3	0.00004
ORF7b	39	E39Q	Gaa	Caa	4	4	AY.38	0.001997
ORF7b	39	E39X	Gaa	Taa	4	4	AY.47	0.000124
ORF7b	39	E39X	Gaa	Taa	4	4	AY.5.3	0.00135
ORF7b	39	E39X	Gaa	Taa	4	4	AY.7	0.000784
ORF7b	39	E39X	Gaa	Taa	4	4	AY.79	0.004843
ORF7b	39	E39V	gAa	gTa	4	4	AY.9.2	0.000147
ORF7b	39	E39K	Gaa	Aaa	4	4	AY.9.2	0.000147
ORF7b	39	E39K	Gaa	Aaa	4	4	B.1	0.000037
ORF7b	39	E39E	gaA	gaG	4	4	B.1	0.000037
ORF7b	39	E39G	gAa	gGa	4	4	B.1	0.000037
ORF7b	39	E39del	GAA	---	4	4	B.1.1	0.000073
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.1.214	0.000222
ORF7b	39	E39del	GAA	---	4	4	B.1.1.214	0.000222
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.1.243	0.016327
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.1.277	0.003035
ORF7b	39	E39Q	Gaa	Caa	4	4	B.1.1.291	0.00297
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.1.344	0.043011
ORF7b	39	E39del	GAA	---	4	4	B.1.1.519	0.000159
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.1.525	0.021858
ORF7b	39	E39D	gaA	gaC	3	4	B.1.1.7	0.000003
ORF7b	39	E39D	gaA	gaT	1	4	B.1.1.7	0.000001
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.177.21	0.000306
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.234	0.000528
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.398	0.011905
ORF7b	39	E39Q	Gaa	Caa	4	4	B.1.429	0.000094
ORF7b	39	E39A	gAa	gCa	4	4	B.1.575	0.001214
ORF7b	39	E39X	Gaa	Taa	4	4	B.1.577	0.002749
ORF7b	39	E39A	gAa	gCa	4	4	B.1.617.2	0.000015
ORF7b	39	E39Y	GaA	TaT	4	4	P.1	0.000063
ORF7b	39	E39Q	Gaa	Caa	4	4	P.1	0.000063
ORF7b	39	E39X	Gaa	Taa	4	4	P.1.14	0.000191
ORF7b	39	E39R	GAa	CGa	2	3	All	0
ORF7b	39	E39R	GAa	AGa	1	3	All	0
ORF7b	39	E39V	gAa	gTa	3	3	AY.102	0.00008
ORF7b	39	E39del	GAA	---	3	3	AY.39	0.000074
ORF7b	39	E39V	gAa	gTa	3	3	AY.4	0.000005
ORF7b	39	E39D	gaA	gaT	2	3	AY.4	0.000003
ORF7b	39	E39D	gaA	gaC	1	3	AY.4	0.000002
ORF7b	39	E39E	gaA	gaG	3	3	AY.43	0.000013
ORF7b	39	E39Q	Gaa	Caa	3	3	AY.43	0.000013
ORF7b	39	E39D	gaA	gaC	2	3	AY.43	0.000009
ORF7b	39	E39D	gaA	gaT	1	3	AY.43	0.000004
ORF7b	39	E39X	Gaa	Taa	3	3	AY.46.5	0.000595
ORF7b	39	E39del	GAA	---	3	3	AY.47	0.000093
ORF7b	39	E39del	GAA	---	3	3	AY.48	0.001395
ORF7b	39	E39X	Gaa	Taa	3	3	AY.7.1	0.000338
ORF7b	39	E39X	Gaa	Taa	3	3	AY.70	0.000626
ORF7b	39	E39del1	gAa	g-a	2	3	B.1	0.000018
ORF7b	39	E39del1	Gaa	-aa	1	3	B.1	0.000009
ORF7b	39	E39Q	Gaa	Caa	3	3	B.1.1	0.000054
ORF7b	39	E39K	Gaa	Aaa	3	3	B.1.1	0.000054
ORF7b	39	E39X	Gaa	Taa	3	3	B.1.1.220	0.005576
ORF7b	39	E39X	Gaa	Taa	3	3	B.1.1.222	0.000612
ORF7b	39	E39X	Gaa	Taa	3	3	B.1.1.25	0.001706
ORF7b	39	E39Q	Gaa	Caa	3	3	B.1.1.311	0.001074
ORF7b	39	E39V	gAa	gTa	3	3	B.1.1.7	0.000003
ORF7b	39	E39del1	Gaa	-aa	3	3	B.1.1.7	0.000003
ORF7b	39	E39K	Gaa	Aaa	3	3	B.1.2	0.000026
ORF7b	39	E39X	Gaa	Taa	3	3	B.1.258.17	0.000312
ORF7b	39	E39X	Gaa	Taa	3	3	B.1.409	0.002344
ORF7b	39	E39Q	Gaa	Caa	3	3	B.1.427	0.000151
ORF7b	39	E39X	Gaa	Taa	3	3	B.1.497	0.000944
ORF7b	39	E39G	gAa	gGa	3	3	B.1.526	0.000071
ORF7b	39	E39X	Gaa	Taa	3	3	B.1.609	0.001438
ORF7b	39	E39Q	Gaa	Caa	3	3	B.1.617.1	0.000387
ORF7b	39	E39Q	Gaa	Caa	3	3	D.2	0.000225
ORF7b	39	E39E	gaA	gaG	3	3	P.1	0.000047
ORF7b	39	E39V	gAa	gTa	3	3	P.1.12	0.001452
ORF7b	39	E39del	GAA	---	3	3	P.1.15	0.000697
ORF7b	39	E39X	Gaa	Taa	3	3	P.2	0.00056
ORF7b	39	E39X	Gaa	Taa	3	3	R.1	0.00027
ORF7b	39	E39Q	Gaa	Caa	2	2		0.111111
ORF7b	39	E39L	GAa	CTa	2	2		0.111111
ORF7b	39	E39V	gAa	gTa	2	2		0.111111
ORF7b	39	E39X	Gaa	Taa	2	2		0.111111
ORF7b	39	E39X	Gaa	Taa	2	2	A	0.000774
ORF7b	39	E39del	GAA	---	2	2	A.2.2	0.003378
ORF7b	39	E39del	GAA	---	2	2	AD.2	0.000438
ORF7b	39	E39L	GAa	CTa	2	2	All	0
ORF7b	39	E39H	GaA	CaT	2	2	All	0
ORF7b	39	E39T	GAA	ACT	1	2	All	0
ORF7b	39	E39T	GAa	ACa	1	2	All	0
ORF7b	39	E39Q	Gaa	Caa	2	2	AY.100	0.000092
ORF7b	39	E39D	gaA	gaT	2	2	AY.103	0.000012
ORF7b	39	E39X	Gaa	Taa	2	2	AY.113	0.000285
ORF7b	39	E39X	Gaa	Taa	2	2	AY.114	0.000462
ORF7b	39	E39del	GAA	---	2	2	AY.118	0.000125
ORF7b	39	E39del	GAA	---	2	2	AY.119	0.000071
ORF7b	39	E39V	gAa	gTa	2	2	AY.25	0.000012
ORF7b	39	E39K	Gaa	Aaa	2	2	AY.25	0.000012
ORF7b	39	E39G	gAa	gGa	2	2	AY.3	0.00002
ORF7b	39	E39X	Gaa	Taa	2	2	AY.3.1	0.000171
ORF7b	39	E39del	GAA	---	2	2	AY.30	0.000791
ORF7b	39	E39V	gAa	gTa	2	2	AY.39	0.000049
ORF7b	39	E39K	Gaa	Aaa	2	2	AY.39.2	0.003082
ORF7b	39	E39del	GAA	---	2	2	AY.4.2	0.000043
ORF7b	39	E39K	Gaa	Aaa	2	2	AY.43	0.000009
ORF7b	39	E39A	gAa	gCa	2	2	AY.43	0.000009
ORF7b	39	E39E	gaA	gaG	2	2	AY.44	0.000012
ORF7b	39	E39K	Gaa	Aaa	2	2	AY.44	0.000012
ORF7b	39	E39X	Gaa	Taa	2	2	AY.46.4	0.000329
ORF7b	39	E39del	GAA	---	2	2	AY.55	0.001835
ORF7b	39	E39K	Gaa	Aaa	2	2	AY.56	0.00321
ORF7b	39	E39G	gAa	gGa	2	2	AY.59	0.001059
ORF7b	39	E39X	Gaa	Taa	2	2	AY.59	0.001059
ORF7b	39	E39X	Gaa	Taa	2	2	AY.6	0.000082
ORF7b	39	E39X	Gaa	Taa	2	2	AY.62	0.000871
ORF7b	39	E39X	Gaa	Taa	2	2	AY.67	0.000929
ORF7b	39	E39X	Gaa	Taa	2	2	AY.71	0.00095
ORF7b	39	E39X	Gaa	Taa	2	2	AY.75	0.000112
ORF7b	39	E39X	Gaa	Taa	2	2	AY.85	0.000854
ORF7b	39	E39Q	Gaa	Caa	2	2	AY.85	0.000854
ORF7b	39	E39del	GAA	---	2	2	AY.85	0.000854
ORF7b	39	E39G	gAa	gGa	2	2	B	0.000256
ORF7b	39	E39del	GAA	---	2	2	B.1	0.000018
ORF7b	39	E39D	gaA	gaT	2	2	B.1.1	0.000036
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.1.128	0.014184
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.1.216	0.001781
ORF7b	39	E39del2	GAa	--a	2	2	B.1.1.25	0.001137
ORF7b	39	E39del	GAA	---	2	2	B.1.1.306	0.000877
ORF7b	39	E39G	gAa	gGa	2	2	B.1.1.317	0.000823
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.1.33	0.000842
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.1.354	0.008772
ORF7b	39	E39Q	Gaa	Caa	2	2	B.1.1.398	0.006452
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.1.486	0.003155
ORF7b	39	E39A	gAa	gCa	2	2	B.1.1.7	0.000002
ORF7b	39	E39K	Gaa	Aaa	2	2	B.1.177	0.000026
ORF7b	39	E39del	GAA	---	2	2	B.1.177	0.000026
ORF7b	39	E39V	gAa	gTa	2	2	B.1.177.44	0.001038
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.177.45	0.000762
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.177.73	0.001133
ORF7b	39	E39E	gaA	gaG	2	2	B.1.258	0.000133
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.311	0.000549
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.351.1	0.076923
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.351.3	0.001753
ORF7b	39	E39del	GAA	---	2	2	B.1.36	0.000292
ORF7b	39	E39G	gAa	gGa	2	2	B.1.36	0.000292
ORF7b	39	E39K	Gaa	Aaa	2	2	B.1.36.29	0.001035
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.36.39	0.004435
ORF7b	39	E39K	Gaa	Aaa	2	2	B.1.427	0.000101
ORF7b	39	E39del	GAA	---	2	2	B.1.427	0.000101
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.471	0.005464
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.524	0.002813
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.525	0.000226
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.530	0.014286
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.566	0.038462
ORF7b	39	E39del	GAA	---	2	2	B.1.582	0.000981
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.582	0.000981
ORF7b	39	E39K	Gaa	Aaa	2	2	B.1.595	0.000522
ORF7b	39	E39K	Gaa	Aaa	2	2	B.1.617.2	0.000008
ORF7b	39	E39E	gaA	gaG	2	2	B.1.619.1	0.001283
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.628	0.000705
ORF7b	39	E39Q	Gaa	Caa	2	2	B.1.637	0.000146
ORF7b	39	E39X	Gaa	Taa	2	2	B.1.637	0.000146
ORF7b	39	E39X	Gaa	Taa	2	2	B.40	0.000729
ORF7b	39	E39X	Gaa	Taa	2	2	B.6	0.00182
ORF7b	39	E39T	GAa	ACa	1	2	P.1	0.000016
ORF7b	39	E39T	GAA	ACT	1	2	P.1	0.000016
ORF7b	39	E39del	GAA	---	2	2	P.1.1	0.000635
ORF7b	39	E39X	Gaa	Taa	2	2	P.1.2	0.002312
ORF7b	39	E39G	gAa	gGa	2	2	Q.8	0.00033
ORF7b	39	E39del	GAA	---	1	1	A.1	0.000282
ORF7b	39	E39X	Gaa	Taa	1	1	A.1	0.000282
ORF7b	39	E39X	Gaa	Taa	1	1	A.2	0.000662
ORF7b	39	E39K	Gaa	Aaa	1	1	A.2.2	0.001689
ORF7b	39	E39Q	Gaa	Caa	1	1	A.2.5	0.000499
ORF7b	39	E39del	GAA	---	1	1	A.23.1	0.000704
ORF7b	39	E39X	Gaa	Taa	1	1	A.27	0.001656
ORF7b	39	E39X	Gaa	Taa	1	1	A.5	0.001923
ORF7b	39	E39X	Gaa	Taa	1	1	AE.8	0.000489
ORF7b	39	E39N	GaA	AaT	1	1	All	0
ORF7b	39	E39C	GAA	TGT	1	1	All	0
ORF7b	39	E39K	Gaa	Aaa	1	1	AY.100	0.000046
ORF7b	39	E39del	GAA	---	1	1	AY.102	0.000027
ORF7b	39	E39X	Gaa	Taa	1	1	AY.102	0.000027
ORF7b	39	E39G	gAa	gGa	1	1	AY.103	0.000006
ORF7b	39	E39V	gAa	gTa	1	1	AY.103	0.000006
ORF7b	39	E39X	Gaa	Taa	1	1	AY.106	0.000335
ORF7b	39	E39del	GAA	---	1	1	AY.108	0.001103
ORF7b	39	E39X	Gaa	Taa	1	1	AY.109	0.00074
ORF7b	39	E39X	Gaa	Taa	1	1	AY.110	0.000113
ORF7b	39	E39X	Gaa	Taa	1	1	AY.111	0.000183
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.116	0.000287
ORF7b	39	E39D	gaA	gaT	1	1	AY.117	0.000085
ORF7b	39	E39E	gaA	gaG	1	1	AY.118	0.000063
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.12	0.000316
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.120	0.000037
ORF7b	39	E39X	Gaa	Taa	1	1	AY.120.2.1	0.000498
ORF7b	39	E39del	GAA	---	1	1	AY.121	0.000135
ORF7b	39	E39D	gaA	gaT	1	1	AY.14	0.000088
ORF7b	39	E39G	gAa	gGa	1	1	AY.16	0.00038
ORF7b	39	E39X	Gaa	Taa	1	1	AY.16	0.00038
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.16.1	0.00047
ORF7b	39	E39X	Gaa	Taa	1	1	AY.2	0.000356
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.20	0.000039
ORF7b	39	E39G	gAa	gGa	1	1	AY.20	0.000039
ORF7b	39	E39V	gAa	gTa	1	1	AY.20	0.000039
ORF7b	39	E39X	Gaa	Taa	1	1	AY.24	0.000431
ORF7b	39	E39E	gaA	gaG	1	1	AY.25	0.000006
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.26	0.000028
ORF7b	39	E39del	GAA	---	1	1	AY.26	0.000028
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.29.1	0.000221
ORF7b	39	E39X	Gaa	Taa	1	1	AY.29.1	0.000221
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.3.1	0.000085
ORF7b	39	E39X	Gaa	Taa	1	1	AY.32	0.000532
ORF7b	39	E39D	gaA	gaT	1	1	AY.32	0.000532
ORF7b	39	E39A	gAa	gCa	1	1	AY.33	0.000067
ORF7b	39	E39E	gaA	gaG	1	1	AY.36	0.000148
ORF7b	39	E39del1	GaA	-aG	1	1	AY.39.1	0.00004
ORF7b	39	E39D	gaA	gaT	1	1	AY.39.1	0.00004
ORF7b	39	E39del2	gAA	g--	1	1	AY.4	0.000002
ORF7b	39	E39X	Gaa	Taa	1	1	AY.4.3	0.000842
ORF7b	39	E39X	Gaa	Taa	1	1	AY.4.5	0.000107
ORF7b	39	E39del	GAA	---	1	1	AY.4.5	0.000107
ORF7b	39	E39V	gAa	gTa	1	1	AY.42	0.00004
ORF7b	39	E39G	gAa	gGa	1	1	AY.43	0.000004
ORF7b	39	E39D	gaA	gaT	1	1	AY.44	0.000006
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.45	0.000122
ORF7b	39	E39V	gAa	gTa	1	1	AY.46.2	0.000635
ORF7b	39	E39X	Gaa	Taa	1	1	AY.46.2	0.000635
ORF7b	39	E39D	gaA	gaC	1	1	AY.47	0.000031
ORF7b	39	E39X	Gaa	Taa	1	1	AY.48	0.000465
ORF7b	39	E39D	gaA	gaC	1	1	AY.5	0.000021
ORF7b	39	E39V	gAa	gTa	1	1	AY.5	0.000021
ORF7b	39	E39X	Gaa	Taa	1	1	AY.5.4	0.000277
ORF7b	39	E39X	Gaa	Taa	1	1	AY.52	0.000814
ORF7b	39	E39X	Gaa	Taa	1	1	AY.55	0.000917
ORF7b	39	E39del	GAA	---	1	1	AY.56	0.001605
ORF7b	39	E39X	Gaa	Taa	1	1	AY.58	0.000907
ORF7b	39	E39del	GAA	---	1	1	AY.58	0.000907
ORF7b	39	E39D	gaA	gaT	1	1	AY.6	0.000041
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.65	0.000533
ORF7b	39	E39del	GAA	---	1	1	AY.67	0.000464
ORF7b	39	E39E	gaA	gaG	1	1	AY.7.2	0.000559
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.70	0.000209
ORF7b	39	E39del	GAA	---	1	1	AY.71	0.000475
ORF7b	39	E39X	Gaa	Taa	1	1	AY.72	0.001361
ORF7b	39	E39X	Gaa	Taa	1	1	AY.73	0.000665
ORF7b	39	E39del	GAA	---	1	1	AY.75	0.000056
ORF7b	39	E39H	GaA	CaT	1	1	AY.75.1	0.00018
ORF7b	39	E39G	gAa	gGa	1	1	AY.75.1	0.00018
ORF7b	39	E39X	Gaa	Taa	1	1	AY.75.1	0.00018
ORF7b	39	E39X	Gaa	Taa	1	1	AY.78	0.001541
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.8	0.000606
ORF7b	39	E39X	Gaa	Taa	1	1	AY.83	0.001724
ORF7b	39	E39del	GAA	---	1	1	AY.84	0.000437
ORF7b	39	E39D	gaA	gaC	1	1	AY.84	0.000437
ORF7b	39	E39X	Gaa	Taa	1	1	AY.88	0.000884
ORF7b	39	E39G	gAa	gGa	1	1	AY.9	0.000068
ORF7b	39	E39A	gAa	gCa	1	1	AY.9	0.000068
ORF7b	39	E39Q	Gaa	Caa	1	1	AY.9.1	0.000084
ORF7b	39	E39X	Gaa	Taa	1	1	AY.91	0.00073
ORF7b	39	E39X	Gaa	Taa	1	1	AY.93	0.000273
ORF7b	39	E39del	GAA	---	1	1	AY.96	0.002075
ORF7b	39	E39E	gaA	gaG	1	1	AY.98	0.000079
ORF7b	39	E39K	Gaa	Aaa	1	1	AY.98.1	0.000048
ORF7b	39	E39X	Gaa	Taa	1	1	AY.99	0.001049
ORF7b	39	E39del	GAA	---	1	1	AY.99	0.001049
ORF7b	39	E39K	Gaa	Aaa	1	1	B	0.000128
ORF7b	39	E39A	gAa	gCa	1	1	B.1	0.000009
ORF7b	39	E39del2	gAA	g--	1	1	B.1	0.000009
ORF7b	39	E39R	GAa	CGa	1	1	B.1.1	0.000018
ORF7b	39	E39H	GaA	CaT	1	1	B.1.1	0.000018
ORF7b	39	E39A	gAa	gCa	1	1	B.1.1	0.000018
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.129	0.009174
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.174	0.003378
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.192	0.002309
ORF7b	39	E39del	GAA	---	1	1	B.1.1.216	0.00089
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.279	0.001121
ORF7b	39	E39V	gAa	gTa	1	1	B.1.1.28	0.000311
ORF7b	39	E39del	GAA	---	1	1	B.1.1.284	0.000107
ORF7b	39	E39E	gaA	gaG	1	1	B.1.1.29	0.010309
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.1.294	0.001266
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.304	0.002809
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.1.317	0.000412
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.1.318	0.000302
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.1.318	0.000302
ORF7b	39	E39D	gaA	gaT	1	1	B.1.1.318	0.000302
ORF7b	39	E39del1	Gaa	-aa	1	1	B.1.1.318	0.000302
ORF7b	39	E39V	gAa	gTa	1	1	B.1.1.326	0.001761
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.326	0.001761
ORF7b	39	E39V	gAa	gTa	1	1	B.1.1.33	0.000421
ORF7b	39	E39E	gaA	gaG	1	1	B.1.1.33	0.000421
ORF7b	39	E39E	gaA	gaG	1	1	B.1.1.338	0.017241
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.1.355	0.015385
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.369	0.000446
ORF7b	39	E39D	gaA	gaT	1	1	B.1.1.372	0.000689
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.1.39	0.00051
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.404	0.015873
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.409	0.002833
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.414	0.142857
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.1.416	0.000905
ORF7b	39	E39del	GAA	---	1	1	B.1.1.44	0.00241
ORF7b	39	E39E	gaA	gaG	1	1	B.1.1.448	0.002033
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.1.507	0.008696
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.518	0.006329
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.1.519	0.00004
ORF7b	39	E39D	gaA	gaC	1	1	B.1.1.519	0.00004
ORF7b	39	E39del2	GAa	--a	1	1	B.1.1.519	0.00004
ORF7b	39	E39del2	GAA	--N	1	1	B.1.1.7	0.000001
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.1.89	0.006061
ORF7b	39	E39del1	Gaa	-aa	1	1	B.1.110.3	0.000718
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.128	0.000635
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.160	0.000031
ORF7b	39	E39G	gAa	gGa	1	1	B.1.160	0.000031
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.160.30	0.002976
ORF7b	39	E39D	gaA	gaC	1	1	B.1.177	0.000013
ORF7b	39	E39G	gAa	gGa	1	1	B.1.177	0.000013
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.177	0.000013
ORF7b	39	E39del	GAA	---	1	1	B.1.177.15	0.000631
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.177.17	0.000821
ORF7b	39	E39E	gaA	gaG	1	1	B.1.177.18	0.00116
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.177.20	0.001517
ORF7b	39	E39R	GAa	CGa	1	1	B.1.177.21	0.000076
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.177.28	0.007407
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.177.36	0.016129
ORF7b	39	E39D	gaA	gaT	1	1	B.1.177.44	0.000519
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.177.54	0.000606
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.177.6	0.000977
ORF7b	39	E39D	gaA	gaT	1	1	B.1.177.60	0.000218
ORF7b	39	E39del	GAA	---	1	1	B.1.177.7	0.000165
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.177.73	0.000566
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.177.81	0.000189
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.177.82	0.000477
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.177.82	0.000477
ORF7b	39	E39del	GAA	---	1	1	B.1.177.83	0.001481
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.177.87	0.000728
ORF7b	39	E39del	GAA	---	1	1	B.1.195	0.005025
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.199	0.004132
ORF7b	39	E39del1	Gaa	-aa	1	1	B.1.2	0.000009
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.206	0.000816
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.214	0.003663
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.218	0.005155
ORF7b	39	E39E	gaA	gaG	1	1	B.1.221	0.000071
ORF7b	39	E39D	gaA	gaC	1	1	B.1.221	0.000071
ORF7b	39	E39del	GAA	---	1	1	B.1.234	0.000132
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.236	0.002053
ORF7b	39	E39del	GAA	---	1	1	B.1.258	0.000067
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.258	0.000067
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.258.11	0.000396
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.258.14	0.00098
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.258.3	0.001675
ORF7b	39	E39V	gAa	gTa	1	1	B.1.279	0.000514
ORF7b	39	E39E	gaA	gaG	1	1	B.1.351	0.00003
ORF7b	39	E39D	gaA	gaT	1	1	B.1.351	0.00003
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.351.3	0.000876
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.36	0.000146
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.36.10	0.004785
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.36.22	0.001208
ORF7b	39	E39C	GAA	TGT	1	1	B.1.36.29	0.000517
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.36.39	0.002217
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.361	0.001289
ORF7b	39	E39del	GAA	---	1	1	B.1.369	0.000285
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.375	0.00082
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.391	0.001127
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.391	0.001127
ORF7b	39	E39E	gaA	gaG	1	1	B.1.399	0.001934
ORF7b	39	E39del	GAA	---	1	1	B.1.400	0.000429
ORF7b	39	E39D	gaA	gaT	1	1	B.1.400	0.000429
ORF7b	39	E39del1	Gaa	-aa	1	1	B.1.427	0.00005
ORF7b	39	E39A	gAa	gCa	1	1	B.1.427	0.00005
ORF7b	39	E39del	GAA	---	1	1	B.1.429	0.000024
ORF7b	39	E39V	gAa	gTa	1	1	B.1.429	0.000024
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.460	0.017857
ORF7b	39	E39del	GAA	---	1	1	B.1.468	0.005714
ORF7b	39	E39del	GAA	---	1	1	B.1.499	0.00105
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.509	0.000866
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.556	0.007519
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.565	0.00081
ORF7b	39	E39del	GAA	---	1	1	B.1.565	0.00081
ORF7b	39	E39V	gAa	gTa	1	1	B.1.576	0.000907
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.595	0.000261
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.596	0.000087
ORF7b	39	E39G	gAa	gGa	1	1	B.1.596	0.000087
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.600	0.005848
ORF7b	39	E39A	gAa	gCa	1	1	B.1.602	0.006536
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.609	0.000479
ORF7b	39	E39G	gAa	gGa	1	1	B.1.617.2	0.000004
ORF7b	39	E39Q	Gaa	Caa	1	1	B.1.621	0.000089
ORF7b	39	E39K	Gaa	Aaa	1	1	B.1.621	0.000089
ORF7b	39	E39E	gaA	gaG	1	1	B.1.627	0.00202
ORF7b	39	E39del	GAA	---	1	1	B.1.630	0.005236
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.633	0.041667
ORF7b	39	E39X	Gaa	Taa	1	1	B.1.9	0.006173
ORF7b	39	E39X	Gaa	Taa	1	1	B.6.6	0.000889
ORF7b	39	E39X	Gaa	Taa	1	1	C.18	0.002591
ORF7b	39	E39del	GAA	---	1	1	C.26	0.007353
ORF7b	39	E39X	Gaa	Taa	1	1	C.36	0.000911
ORF7b	39	E39X	Gaa	Taa	1	1	C.36.3	0.000567
ORF7b	39	E39V	gAa	gTa	1	1	C.37	0.000116
ORF7b	39	E39del	GAA	---	1	1	C.37	0.000116
ORF7b	39	E39E	gaA	gaG	1	1	C.37	0.000116
ORF7b	39	E39A	gAa	gCa	1	1	D.2	0.000075
ORF7b	39	E39N	GaA	AaT	1	1	P.1	0.000016
ORF7b	39	E39R	GAa	AGa	1	1	P.1	0.000016
ORF7b	39	E39K	Gaa	Aaa	1	1	P.1	0.000016
ORF7b	39	E39X	Gaa	Taa	1	1	P.1.12	0.000484
ORF7b	39	E39del	GAA	---	1	1	P.1.14	0.000048
ORF7b	39	E39Q	Gaa	Caa	1	1	P.1.14	0.000048
ORF7b	39	E39V	gAa	gTa	1	1	P.1.14	0.000048
ORF7b	39	E39E	gaA	gaG	1	1	P.1.15	0.000232
ORF7b	39	E39X	Gaa	Taa	1	1	P.1.15	0.000232
ORF7b	39	E39X	Gaa	Taa	1	1	P.1.17	0.000162
ORF7b	39	E39A	gAa	gCa	1	1	P.1.2	0.001156
ORF7b	39	E39V	gAa	gTa	1	1	P.1.2	0.001156
ORF7b	39	E39Q	Gaa	Caa	1	1	P.1.7	0.000319
ORF7b	39	E39A	gAa	gCa	1	1	P.2	0.000187
ORF7b	39	E39G	gAa	gGa	1	1	Q.1	0.000126
ORF7b	39	E39X	Gaa	Taa	1	1	Q.1	0.000126
ORF7b	39	E39K	Gaa	Aaa	1	1	Q.1	0.000126
ORF7b	39	E39X	Gaa	Taa	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.