CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 38 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b38N38NsynaaTaaC10691069127867-27869

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b38N38NaaTaaC10691069All0.000204
ORF7b38N38NaaTaaC611611B.1.1260.779337
ORF7b38N38NaaTaaC127127B.1.1.70.000114
ORF7b38N38NaaTaaC5959B.1.1.3550.907692
ORF7b38N38NaaTaaC3838AY.40.000059
ORF7b38N38NaaTaaC3131B.1.381
ORF7b38N38NaaTaaC2525B.1.1770.000329
ORF7b38N38NaaTaaC2323B.10.000211
ORF7b38N38NaaTaaC2020AY.50.000413
ORF7b38N38NaaTaaC1212B.1.5311
ORF7b38N38NaaTaaC1111AY.440.000067
ORF7b38N38NaaTaaC1111B.1.10.0002
ORF7b38N38NaaTaaC1010B.1.177.100.00878
ORF7b38N38NaaTaaC1010B.1.617.20.000038
ORF7b38N38NaaTaaC99B.1.1.5190.000357
ORF7b38N38NaaTaaC88B.1.5250.000905
ORF7b38N38NaaTaaC66AY.200.000233
ORF7b38N38NaaTaaC66AY.430.000027
ORF7b38N38NaaTaaC55AY.60.000206
ORF7b38N38NaaTaaC44B.1.20.000035
ORF7b38N38NaaTaaC33AY.460.000312
ORF7b38N38NaaTaaC22A.290.010638
ORF7b38N38NaaTaaC22AY.1030.000012
ORF7b38N38NaaTaaC22AY.230.000139
ORF7b38N38NaaTaaC22AY.850.000854
ORF7b38N38NaaTaaC22B.1.1.3180.000604
ORF7b38N38NaaTaaC22B.1.2340.000264
ORF7b38N38NaaTaaC22B.1.2580.000133
ORF7b38N38NaaTaaC22B.1.3510.000059
ORF7b38N38NaaTaaC22B.1.4270.000101
ORF7b38N38NaaTaaC22B.1.466.20.000782
ORF7b38N38NaaTaaC22B.1.5960.000174
ORF7b38N38NaaTaaC22P.10.000032
ORF7b38N38NaaTaaC11AY.1050.000643
ORF7b38N38NaaTaaC11AY.450.000122
ORF7b38N38NaaTaaC11B.1.1040.00369
ORF7b38N38NaaTaaC11B.1.110.30.000718
ORF7b38N38NaaTaaC11B.1.160.260.002421
ORF7b38N38NaaTaaC11B.1.177.170.000821
ORF7b38N38NaaTaaC11B.1.177.820.000477
ORF7b38N38NaaTaaC11B.1.2430.00007
ORF7b38N38NaaTaaC11B.1.3330.010526
ORF7b38N38NaaTaaC11B.1.36.10.00114
ORF7b38N38NaaTaaC11B.1.36.290.000517
ORF7b38N38NaaTaaC11B.1.3990.001934
ORF7b38N38NaaTaaC11B.1.4290.000024
ORF7b38N38NaaTaaC11B.1.5260.000024
ORF7b38N38NaaTaaC11B.1.5610.000397
ORF7b38N38NaaTaaC11B.1.5800.004065

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.