CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 38

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b38N38NsynaaTaaC10691069127867-27869
ORF7b38N38deldelAAT---378378127867-27869
ORF7b38N38SnonsynaAtaGt3213190.99376927867-27869
ORF7b38N38SnonsynaATaGC32120.0062305327867-27869
ORF7b38N38KnonsynaaTaaG2822640.9361727867-27869
ORF7b38N38KnonsynaaTaaA282180.063829827867-27869
ORF7b38N38DnonsynAatGat214214127867-27869
ORF7b38N38InonsynaAtaTt77730.94805227867-27869
ORF7b38N38InonsynaATaTC7720.02597427867-27869
ORF7b38N38InonsynaATaTA7720.02597427867-27869
ORF7b38N38YnonsynAatTat3838127867-27869
ORF7b38N38TnonsynaAtaCt26190.73076927867-27869
ORF7b38N38TnonsynaATaCG2670.26923127867-27869
ORF7b38N38HnonsynAatCat1717127867-27869
ORF7b38N38GnonsynAAtGGt15110.73333327867-27869
ORF7b38N38GnonsynAATGGC1520.13333327867-27869
ORF7b38N38GnonsynAATGGA1520.13333327867-27869
ORF7b38N38RnonsynAAtCGt1360.46153827867-27869
ORF7b38N38RnonsynAATCGG1330.23076927867-27869
ORF7b38N38RnonsynaATaGA1320.15384627867-27869
ORF7b38N38RnonsynaATaGG1320.15384627867-27869
ORF7b38N38PnonsynAAtCCt1050.527867-27869
ORF7b38N38PnonsynAATCCG1050.527867-27869
ORF7b38N38del1delaaTaa-730.42857127867-27869
ORF7b38N38del1delAat-at720.28571427867-27869
ORF7b38N38del1delAaT-aC710.14285727867-27869
ORF7b38N38del1delAaTGa-710.14285727867-27869
ORF7b38N38QnonsynAaTCaG66127867-27869
ORF7b38N38VnonsynAATGTA420.527867-27869
ORF7b38N38VnonsynAATGTC420.527867-27869
ORF7b38N38del2delAAt--t22127867-27869

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b38N38NaaTaaC10691069All0.000204
ORF7b38N38NaaTaaC611611B.1.1260.779337
ORF7b38N38delAAT---378378All0.000072
ORF7b38N38SaAtaGt319321All0.000061
ORF7b38N38SaATaGC2321All0
ORF7b38N38KaaTaaG264282All0.00005
ORF7b38N38KaaTaaA18282All0.000003
ORF7b38N38DAatGat214214All0.000041
ORF7b38N38DAatGat181181B.1.1.5190.007188
ORF7b38N38KaaTaaG179179B.1.617.20.000674
ORF7b38N38SaAtaGt158158AY.40.000246
ORF7b38N38NaaTaaC127127B.1.1.70.000114
ORF7b38N38IaAtaTt7377All0.000014
ORF7b38N38IaATaTA277All0
ORF7b38N38IaATaTC277All0
ORF7b38N38delAAT---6262AY.40.000096
ORF7b38N38NaaTaaC5959B.1.1.3550.907692
ORF7b38N38delAAT---5959B.1.1.70.000053
ORF7b38N38KaaTaaG5757AY.1000.002622
ORF7b38N38SaAtaGt5656B.1.1.70.00005
ORF7b38N38delAAT---4949B.1.2430.00341
ORF7b38N38SaAtaGt4444AY.1030.000273
ORF7b38N38YAatTat3838All0.000007
ORF7b38N38NaaTaaC3838AY.40.000059
ORF7b38N38delAAT---3737AY.290.000584
ORF7b38N38IaAtaTt3232B.1.1.4030.820513
ORF7b38N38NaaTaaC3131B.1.381
ORF7b38N38TaAtaCt1926All0.000004
ORF7b38N38TaATaCG726All0.000001
ORF7b38N38NaaTaaC2525B.1.1770.000329
ORF7b38N38NaaTaaC2323B.10.000211
ORF7b38N38NaaTaaC2020AY.50.000413
ORF7b38N38HAatCat1717All0.000003
ORF7b38N38delAAT---1717B0.002173
ORF7b38N38GAAtGGt1115All0.000002
ORF7b38N38GAATGGC215All0
ORF7b38N38GAATGGA215All0
ORF7b38N38DAatGat1414B.1.1.70.000013
ORF7b38N38TaATaCG714P.10.00011
ORF7b38N38TaAtaCt714P.10.00011
ORF7b38N38RAAtCGt613All0.000001
ORF7b38N38RAATCGG313All0.000001
ORF7b38N38RaATaGA213All0
ORF7b38N38RaATaGG213All0
ORF7b38N38delAAT---1212B.1.20.000106
ORF7b38N38NaaTaaC1212B.1.5311
ORF7b38N38NaaTaaC1111AY.440.000067
ORF7b38N38SaAtaGt1111AY.740.001272
ORF7b38N38NaaTaaC1111B.1.10.0002
ORF7b38N38GAAtGGt1111D.20.000825
ORF7b38N38PAATCCG510All0.000001
ORF7b38N38PAAtCCt510All0.000001
ORF7b38N38NaaTaaC1010B.1.177.100.00878
ORF7b38N38NaaTaaC1010B.1.617.20.000038
ORF7b38N38KaaTaaG910P.10.000142
ORF7b38N38KaaTaaA110P.10.000016
ORF7b38N38YAatTat99AY.40.000014
ORF7b38N38NaaTaaC99B.1.1.5190.000357
ORF7b38N38SaAtaGt99B.1.617.20.000034
ORF7b38N38PAATCCG59P.10.000079
ORF7b38N38PAAtCCt49P.10.000063
ORF7b38N38RAAtCGt49P.10.000063
ORF7b38N38RAATCGG39P.10.000047
ORF7b38N38RaATaGG29P.10.000032
ORF7b38N38IaAtaTt88AY.40.000012
ORF7b38N38delAAT---88AY.440.000049
ORF7b38N38KaaTaaG48B.1.2430.000278
ORF7b38N38KaaTaaA48B.1.2430.000278
ORF7b38N38NaaTaaC88B.1.5250.000905
ORF7b38N38del1aaTaa-37All0.000001
ORF7b38N38del1Aat-at27All0
ORF7b38N38del1AaT-aC17All0
ORF7b38N38del1AaTGa-17All0
ORF7b38N38delAAT---77AY.1030.000043
ORF7b38N38IaAtaTt77B.1.10.000127
ORF7b38N38delAAT---77B.1.1.2650.022082
ORF7b38N38HAatCat77P.10.00011
ORF7b38N38QAaTCaG66All0.000001
ORF7b38N38NaaTaaC66AY.200.000233
ORF7b38N38delAAT---66AY.29.10.001323
ORF7b38N38NaaTaaC66AY.430.000027
ORF7b38N38delAAT---66AY.430.000027
ORF7b38N38IaAtaTt66B.1.1.70.000005
ORF7b38N38delAAT---66B.1.617.20.000023
ORF7b38N38IaAtaTt66P.10.000095
ORF7b38N38QAaTCaG66P.10.000095
ORF7b38N38NaaTaaC55AY.60.000206
ORF7b38N38delAAT---55B.1.10.000091
ORF7b38N38DAatGat55B.1.1.3170.002058
ORF7b38N38delAAT---55B.1.1.5190.000199
ORF7b38N38delAAT---55B.1.5260.000118
ORF7b38N38delAAT---440.222222
ORF7b38N38GAATGGA240.111111
ORF7b38N38IaATaTC240.111111
ORF7b38N38GAATGGC240.111111
ORF7b38N38VAATGTC240.111111
ORF7b38N38IaATaTA240.111111
ORF7b38N38VAATGTA240.111111
ORF7b38N38VAATGTA24All0
ORF7b38N38VAATGTC24All0
ORF7b38N38YAatTat44AY.270.000259
ORF7b38N38delAAT---44AY.30.00004
ORF7b38N38delAAT---44B.1.1.2140.000222
ORF7b38N38TaAtaCt44B.1.1.5190.000159
ORF7b38N38SaAtaGt44B.1.1770.000053
ORF7b38N38NaaTaaC44B.1.20.000035
ORF7b38N38SaAtaGt44P.10.000063
ORF7b38N38delAAT---33AY.250.000018
ORF7b38N38delAAT---33AY.390.000074
ORF7b38N38NaaTaaC33AY.460.000312
ORF7b38N38delAAT---33AY.480.001395
ORF7b38N38SaAtaGt33AY.630.001161
ORF7b38N38KaaTaaG33AY.980.000237
ORF7b38N38HAatCat33B.10.000027
ORF7b38N38YAatTat33B.10.000027
ORF7b38N38delAAT---33B.10.000027
ORF7b38N38YAatTat33B.1.10.000054
ORF7b38N38KaaTaaA23B.1.1.70.000002
ORF7b38N38KaaTaaG13B.1.1.70.000001
ORF7b38N38DAatGat33B.1.20.000026
ORF7b38N38SaAtaGt33B.1.2430.000209
ORF7b38N38YAatTat33B.1.36.380.004926
ORF7b38N38KaaTaaG33B.1.9.50.017045
ORF7b38N38delAAT---33P.1.150.000697
ORF7b38N38RaATaGA220.111111
ORF7b38N38SaATaGC220.111111
ORF7b38N38YAatTat220.111111
ORF7b38N38delAAT---22A.2.20.003378
ORF7b38N38NaaTaaC22A.290.010638
ORF7b38N38delAAT---22AD.20.000438
ORF7b38N38del2AAt--t22All0
ORF7b38N38NaaTaaC22AY.1030.000012
ORF7b38N38delAAT---22AY.1180.000125
ORF7b38N38IaAtaTt22AY.1190.000071
ORF7b38N38NaaTaaC22AY.230.000139
ORF7b38N38TaAtaCt22AY.250.000012
ORF7b38N38SaAtaGt22AY.250.000012
ORF7b38N38delAAT---22AY.300.000791
ORF7b38N38SaAtaGt22AY.300.000791
ORF7b38N38IaAtaTt22AY.4.20.000043
ORF7b38N38delAAT---22AY.4.20.000043
ORF7b38N38SaAtaGt22AY.430.000009
ORF7b38N38SaAtaGt22AY.440.000012
ORF7b38N38IaAtaTt22AY.450.000243
ORF7b38N38delAAT---22AY.470.000062
ORF7b38N38delAAT---22AY.850.000854
ORF7b38N38NaaTaaC22AY.850.000854
ORF7b38N38KaaTaaA12B.1.10.000018
ORF7b38N38KaaTaaG12B.1.10.000018
ORF7b38N38delAAT---22B.1.1.250.001137
ORF7b38N38NaaTaaC22B.1.1.3180.000604
ORF7b38N38KaaTaaA22B.1.1.330.000842
ORF7b38N38YAatTat22B.1.1.70.000002
ORF7b38N38YAatTat22B.1.1600.000062
ORF7b38N38delAAT---22B.1.1770.000026
ORF7b38N38NaaTaaC22B.1.2340.000264
ORF7b38N38NaaTaaC22B.1.2580.000133
ORF7b38N38TaAtaCt22B.1.258.140.001961
ORF7b38N38NaaTaaC22B.1.3510.000059
ORF7b38N38delAAT---22B.1.360.000292
ORF7b38N38NaaTaaC22B.1.4270.000101
ORF7b38N38delAAT---22B.1.4270.000101
ORF7b38N38NaaTaaC22B.1.466.20.000782
ORF7b38N38DAatGat22B.1.5260.000047
ORF7b38N38delAAT---22B.1.5820.000981
ORF7b38N38NaaTaaC22B.1.5960.000174
ORF7b38N38YAatTat22B.1.617.20.000008
ORF7b38N38DAatGat22P.10.000032
ORF7b38N38NaaTaaC22P.10.000032
ORF7b38N38delAAT---22P.1.10.000635
ORF7b38N38SaAtaGt22P.1.140.000096
ORF7b38N38KaaTaaA22P.1.160.000748
ORF7b38N38delAAT---11A.10.000282
ORF7b38N38DAatGat11A.2.40.003367
ORF7b38N38delAAT---11A.23.10.000704
ORF7b38N38delAAT---11AY.1020.000027
ORF7b38N38NaaTaaC11AY.1050.000643
ORF7b38N38delAAT---11AY.1080.001103
ORF7b38N38SaAtaGt11AY.1100.000113
ORF7b38N38DAatGat11AY.1180.000063
ORF7b38N38DAatGat11AY.1190.000035
ORF7b38N38YAatTat11AY.120.10.000321
ORF7b38N38delAAT---11AY.1210.000135
ORF7b38N38KaaTaaA11AY.250.000006
ORF7b38N38delAAT---11AY.260.000028
ORF7b38N38YAatTat11AY.260.000028
ORF7b38N38DAatGat11AY.30.00001
ORF7b38N38IaAtaTt11AY.30.00001
ORF7b38N38KaaTaaG11AY.30.00001
ORF7b38N38delAAT---11AY.39.10.00004
ORF7b38N38KaaTaaG11AY.40.000002
ORF7b38N38HAatCat11AY.40.000002
ORF7b38N38delAAT---11AY.4.50.000107
ORF7b38N38HAatCat11AY.400.000964
ORF7b38N38del1AaTGa-11AY.430.000004
ORF7b38N38IaAtaTt11AY.430.000004
ORF7b38N38KaaTaaG11AY.440.000006
ORF7b38N38del1AaT-aC11AY.440.000006
ORF7b38N38NaaTaaC11AY.450.000122
ORF7b38N38HAatCat11AY.46.60.000072
ORF7b38N38SaAtaGt11AY.5.40.000277
ORF7b38N38delAAT---11AY.550.000917
ORF7b38N38delAAT---11AY.580.000907
ORF7b38N38YAatTat11AY.610.000105
ORF7b38N38KaaTaaA11AY.660.00107
ORF7b38N38delAAT---11AY.670.000464
ORF7b38N38delAAT---11AY.710.000475
ORF7b38N38delAAT---11AY.750.000056
ORF7b38N38KaaTaaG11AY.75.10.00018
ORF7b38N38delAAT---11AY.840.000437
ORF7b38N38delAAT---11AY.990.001049
ORF7b38N38KaaTaaG11B.10.000009
ORF7b38N38DAatGat11B.10.000009
ORF7b38N38del1Aat-at11B.10.000009
ORF7b38N38del1aaTaa-11B.1.10.000018
ORF7b38N38PAAtCCt11B.1.10.000018
ORF7b38N38DAatGat11B.1.1.10.000327
ORF7b38N38delAAT---11B.1.1.2160.00089
ORF7b38N38HAatCat11B.1.1.2220.000204
ORF7b38N38TaAtaCt11B.1.1.2220.000204
ORF7b38N38YAatTat11B.1.1.2820.011628
ORF7b38N38delAAT---11B.1.1.2840.000107
ORF7b38N38delAAT---11B.1.1.3060.000438
ORF7b38N38SaAtaGt11B.1.1.330.000421
ORF7b38N38HAatCat11B.1.1.330.000421
ORF7b38N38RAAtCGt11B.1.1.330.000421
ORF7b38N38YAatTat11B.1.1.3970.002252
ORF7b38N38delAAT---11B.1.1.440.00241
ORF7b38N38TaAtaCt11B.1.1.70.000001
ORF7b38N38NaaTaaC11B.1.1040.00369
ORF7b38N38NaaTaaC11B.1.110.30.000718
ORF7b38N38NaaTaaC11B.1.160.260.002421
ORF7b38N38KaaTaaA11B.1.1770.000013
ORF7b38N38delAAT---11B.1.177.150.000631
ORF7b38N38NaaTaaC11B.1.177.170.000821
ORF7b38N38KaaTaaA11B.1.177.210.000076
ORF7b38N38SaAtaGt11B.1.177.570.000281
ORF7b38N38del2AAt--t11B.1.177.630.002703
ORF7b38N38delAAT---11B.1.177.70.000165
ORF7b38N38NaaTaaC11B.1.177.820.000477
ORF7b38N38delAAT---11B.1.177.830.001481
ORF7b38N38delAAT---11B.1.1950.005025
ORF7b38N38SaAtaGt11B.1.20.000009
ORF7b38N38del1Aat-at11B.1.20.000009
ORF7b38N38KaaTaaG11B.1.20.000009
ORF7b38N38SaAtaGt11B.1.2100.002132
ORF7b38N38delAAT---11B.1.2340.000132
ORF7b38N38NaaTaaC11B.1.2430.00007
ORF7b38N38del1aaTaa-11B.1.2430.00007
ORF7b38N38IaAtaTt11B.1.2580.000067
ORF7b38N38delAAT---11B.1.2580.000067
ORF7b38N38NaaTaaC11B.1.3330.010526
ORF7b38N38SaAtaGt11B.1.3510.00003
ORF7b38N38YAatTat11B.1.3510.00003
ORF7b38N38NaaTaaC11B.1.36.10.00114
ORF7b38N38NaaTaaC11B.1.36.290.000517
ORF7b38N38TaAtaCt11B.1.36.80.001
ORF7b38N38delAAT---11B.1.3690.000285
ORF7b38N38NaaTaaC11B.1.3990.001934
ORF7b38N38SaAtaGt11B.1.400.019608
ORF7b38N38delAAT---11B.1.4000.000429
ORF7b38N38SaAtaGt11B.1.4160.001269
ORF7b38N38KaaTaaG11B.1.4270.00005
ORF7b38N38del1aaTaa-11B.1.4270.00005
ORF7b38N38delAAT---11B.1.4290.000024
ORF7b38N38NaaTaaC11B.1.4290.000024
ORF7b38N38IaAtaTt11B.1.4290.000024
ORF7b38N38KaaTaaA11B.1.438.10.000107
ORF7b38N38YAatTat11B.1.438.40.021277
ORF7b38N38SaAtaGt11B.1.4410.009615
ORF7b38N38delAAT---11B.1.4680.005714
ORF7b38N38SaAtaGt11B.1.4970.000315
ORF7b38N38delAAT---11B.1.4990.00105
ORF7b38N38SaAtaGt11B.1.4990.00105
ORF7b38N38NaaTaaC11B.1.5260.000024
ORF7b38N38DAatGat11B.1.5560.007519
ORF7b38N38NaaTaaC11B.1.5610.000397
ORF7b38N38NaaTaaC11B.1.5800.004065
ORF7b38N38IaAtaTt11B.1.5960.000087
ORF7b38N38SaAtaGt11B.1.617.10.000129
ORF7b38N38IaAtaTt11B.1.617.20.000004
ORF7b38N38delAAT---11B.1.6300.005236
ORF7b38N38KaaTaaA11B.1.6370.000073
ORF7b38N38delAAT---11C.260.007353
ORF7b38N38SaAtaGt11C.360.000911
ORF7b38N38delAAT---11C.370.000116
ORF7b38N38IaAtaTt11C.370.000116
ORF7b38N38TaAtaCt11D.20.000075
ORF7b38N38YAatTat11P.10.000016
ORF7b38N38delAAT---11P.1.140.000048
ORF7b38N38del2AAt--t11P.1.140.000048
ORF7b38N38HAatCat11P.1.20.001156
ORF7b38N38RAAtCGt11P.20.000187
ORF7b38N38IaAtaTt11P.20.000187
ORF7b38N38SaAtaGt11P.20.000187
ORF7b38N38HAatCat11P.20.000187
ORF7b38N38SaAtaGt11Q.30.000145
ORF7b38N38SaAtaGt11Q.80.000165