CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 37

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7b	37	H37L		nonsyn	cAT	cTA	1740	1579	0.907471	27864-27866
ORF7b	37	H37L		nonsyn	cAt	cTt	1740	159	0.0913793	27864-27866
ORF7b	37	H37L		nonsyn	cAT	cTG	1740	2	0.00114943	27864-27866
ORF7b	37	H37H		syn	caT	caC	441	441	1	27864-27866
ORF7b	37	H37del		del	CAT	---	362	362	1	27864-27866
ORF7b	37	H37N		nonsyn	Cat	Aat	299	299	1	27864-27866
ORF7b	37	H37Y		nonsyn	Cat	Tat	280	279	0.996429	27864-27866
ORF7b	37	H37Y		nonsyn	CaT	TaC	280	1	0.00357143	27864-27866
ORF7b	37	H37R		nonsyn	cAt	cGt	187	181	0.967914	27864-27866
ORF7b	37	H37R		nonsyn	cAT	cGG	187	5	0.026738	27864-27866
ORF7b	37	H37R		nonsyn	cAT	cGC	187	1	0.00534759	27864-27866
ORF7b	37	H37Q		nonsyn	caT	caA	111	104	0.936937	27864-27866
ORF7b	37	H37Q		nonsyn	caT	caG	111	7	0.0630631	27864-27866
ORF7b	37	H37P		nonsyn	cAt	cCt	16	16	1	27864-27866
ORF7b	37	H37del1		del	caT	ca-	9	8	0.888889	27864-27866
ORF7b	37	H37del1		del	cAt	c-t	9	1	0.111111	27864-27866
ORF7b	37	H37del2		del	cAT	c--	7	5	0.714286	27864-27866
ORF7b	37	H37G		nonsyn	CAt	GGt	7	3	0.428571	27864-27866
ORF7b	37	H37del2		del	CAt	--t	7	2	0.285714	27864-27866
ORF7b	37	H37G		nonsyn	CAT	GGC	7	2	0.285714	27864-27866
ORF7b	37	H37G		nonsyn	CAT	GGG	7	2	0.285714	27864-27866
ORF7b	37	H37D		nonsyn	Cat	Gat	6	5	0.833333	27864-27866
ORF7b	37	H37D		nonsyn	CaT	GaC	6	1	0.166667	27864-27866
ORF7b	37	H37S		nonsyn	CAt	AGt	2	2	1	27864-27866
ORF7b	37	H37E		nonsyn	CaT	GaG	2	2	1	27864-27866
ORF7b	37	H37X		nonsyn	CaT	TaA	1	1	1	27864-27866

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7b	37	H37L	cAT	cTA	1579	1740	All	0.000302
ORF7b	37	H37L	cAt	cTt	159	1740	All	0.00003
ORF7b	37	H37L	cAT	cTG	2	1740	All	0
ORF7b	37	H37L	cAT	cTA	1285	1293	B.1.1	0.023311
ORF7b	37	H37L	cAt	cTt	6	1293	B.1.1	0.000109
ORF7b	37	H37L	cAT	cTG	2	1293	B.1.1	0.000036
ORF7b	37	H37H	caT	caC	441	441	All	0.000084
ORF7b	37	H37del	CAT	---	362	362	All	0.000069
ORF7b	37	H37N	Cat	Aat	299	299	All	0.000057
ORF7b	37	H37Y	Cat	Tat	279	280	All	0.000053
ORF7b	37	H37Y	CaT	TaC	1	280	All	0
ORF7b	37	H37R	cAt	cGt	181	187	All	0.000035
ORF7b	37	H37R	cAT	cGG	5	187	All	0.000001
ORF7b	37	H37R	cAT	cGC	1	187	All	0
ORF7b	37	H37H	caT	caC	160	160	B.1.1.7	0.000143
ORF7b	37	H37Q	caT	caA	104	111	All	0.00002
ORF7b	37	H37Q	caT	caG	7	111	All	0.000001
ORF7b	37	H37N	Cat	Aat	101	101	B.1.1.7	0.00009
ORF7b	37	H37H	caT	caC	82	82	AY.118	0.005137
ORF7b	37	H37L	cAT	cTA	73	80	B.1.1.7	0.000065
ORF7b	37	H37L	cAt	cTt	7	80	B.1.1.7	0.000006
ORF7b	37	H37Q	caT	caA	67	67	B.1.1.7	0.00006
ORF7b	37	H37H	caT	caC	62	62	AY.4	0.000096
ORF7b	37	H37del	CAT	---	62	62	AY.4	0.000096
ORF7b	37	H37L	cAt	cTt	54	58	AY.47	0.00168
ORF7b	37	H37L	cAT	cTA	4	58	AY.47	0.000124
ORF7b	37	H37R	cAt	cGt	51	51	AY.44	0.00031
ORF7b	37	H37del	CAT	---	49	49	B.1.243	0.00341
ORF7b	37	H37del	CAT	---	47	47	B.1.1.7	0.000042
ORF7b	37	H37N	Cat	Aat	44	44	AY.42	0.00177
ORF7b	37	H37H	caT	caC	40	40	B.1.617.2	0.000151
ORF7b	37	H37N	Cat	Aat	38	38	AY.43	0.000168
ORF7b	37	H37del	CAT	---	37	37	AY.29	0.000584
ORF7b	37	H37R	cAt	cGt	37	37	AY.4	0.000058
ORF7b	37	H37Y	Cat	Tat	36	36	B.1.1.519	0.00143
ORF7b	37	H37L	cAT	cTA	24	34	B.1	0.00022
ORF7b	37	H37L	cAt	cTt	10	34	B.1	0.000092
ORF7b	37	H37L	cAT	cTA	32	32	B.1.160	0.000998
ORF7b	37	H37Y	Cat	Tat	28	28	AY.16	0.01063
ORF7b	37	H37H	caT	caC	27	27	B.1.577	0.018557
ORF7b	37	H37L	cAt	cTt	13	25	B.1.526	0.000306
ORF7b	37	H37L	cAT	cTA	12	25	B.1.526	0.000282
ORF7b	37	H37Y	Cat	Tat	24	24	B.1.1.298	0.02069
ORF7b	37	H37N	Cat	Aat	22	22	AY.103	0.000137
ORF7b	37	H37N	Cat	Aat	22	22	B.1.617.2	0.000083
ORF7b	37	H37L	cAT	cTA	11	20	B.1.1.37	0.002122
ORF7b	37	H37L	cAt	cTt	9	20	B.1.1.37	0.001736
ORF7b	37	H37Y	Cat	Tat	19	19	B.1.1.7	0.000017
ORF7b	37	H37L	cAT	cTA	19	19	B.1.433	0.060703
ORF7b	37	H37L	cAT	cTA	14	18	B.1.617.2	0.000053
ORF7b	37	H37L	cAt	cTt	4	18	B.1.617.2	0.000015
ORF7b	37	H37N	Cat	Aat	18	18	P.1	0.000284
ORF7b	37	H37del	CAT	---	17	17	B	0.002173
ORF7b	37	H37P	cAt	cCt	16	16	All	0.000003
ORF7b	37	H37L	cAT	cTA	14	14	G.1	0.583333
ORF7b	37	H37Y	Cat	Tat	13	13	B.1	0.000119
ORF7b	37	H37Y	Cat	Tat	13	13	B.1.426	0.013118
ORF7b	37	H37N	Cat	Aat	12	12	AY.44	0.000073
ORF7b	37	H37del	CAT	---	12	12	B.1.2	0.000106
ORF7b	37	H37H	caT	caC	11	11	B.1.1	0.0002
ORF7b	37	H37L	cAT	cTA	11	11	B.1.617.1	0.001419
ORF7b	37	H37Y	Cat	Tat	11	11	B.1.617.2	0.000041
ORF7b	37	H37Y	Cat	Tat	10	10	AY.103	0.000062
ORF7b	37	H37R	cAt	cGt	7	10	P.1	0.00011
ORF7b	37	H37R	cAT	cGG	2	10	P.1	0.000032
ORF7b	37	H37R	cAT	cGC	1	10	P.1	0.000016
ORF7b	37	H37del1	caT	ca-	8	9	All	0.000002
ORF7b	37	H37del1	cAt	c-t	1	9	All	0
ORF7b	37	H37Y	Cat	Tat	9	9	AY.29	0.000142
ORF7b	37	H37Q	caT	caA	9	9	B.1.1.37	0.001736
ORF7b	37	H37R	cAt	cGt	9	9	B.1.617.2	0.000034
ORF7b	37	H37Y	Cat	Tat	8	8	AY.44	0.000049
ORF7b	37	H37del	CAT	---	8	8	AY.44	0.000049
ORF7b	37	H37Y	Cat	Tat	8	8	AY.46.6	0.000578
ORF7b	37	H37Q	caT	caA	8	8	B.1	0.000073
ORF7b	37	H37N	Cat	Aat	8	8	B.1.1	0.000145
ORF7b	37	H37Q	caT	caA	7	8	B.1.1	0.000127
ORF7b	37	H37Q	caT	caG	1	8	B.1.1	0.000018
ORF7b	37	H37del2	cAT	c--	5	7	All	0.000001
ORF7b	37	H37G	CAt	GGt	3	7	All	0.000001
ORF7b	37	H37G	CAT	GGG	2	7	All	0
ORF7b	37	H37G	CAT	GGC	2	7	All	0
ORF7b	37	H37del2	CAt	--t	2	7	All	0
ORF7b	37	H37del	CAT	---	7	7	AY.103	0.000043
ORF7b	37	H37L	cAt	cTt	7	7	AY.4	0.000011
ORF7b	37	H37R	cAt	cGt	6	7	AY.9.2	0.00022
ORF7b	37	H37R	cAT	cGG	1	7	AY.9.2	0.000037
ORF7b	37	H37del	CAT	---	7	7	B.1.1.265	0.022082
ORF7b	37	H37del1	caT	ca-	7	7	B.1.1.7	0.000006
ORF7b	37	H37L	cAT	cTA	4	7	B.1.177	0.000053
ORF7b	37	H37L	cAt	cTt	3	7	B.1.177	0.00004
ORF7b	37	H37Y	Cat	Tat	7	7	B.1.36.29	0.003621
ORF7b	37	H37L	cAT	cTA	7	7	B.1.575.1	0.017073
ORF7b	37	H37D	Cat	Gat	5	6	All	0.000001
ORF7b	37	H37D	CaT	GaC	1	6	All	0
ORF7b	37	H37del	CAT	---	6	6	AY.29.1	0.001323
ORF7b	37	H37R	cAt	cGt	6	6	AY.3	0.00006
ORF7b	37	H37N	Cat	Aat	6	6	AY.34	0.000582
ORF7b	37	H37Y	Cat	Tat	6	6	B.1.1.236	0.041379
ORF7b	37	H37R	cAt	cGt	6	6	B.1.1.7	0.000005
ORF7b	37	H37Q	caT	caG	5	6	P.1	0.000079
ORF7b	37	H37G	CAt	GGt	3	6	P.1	0.000047
ORF7b	37	H37G	CAT	GGG	2	6	P.1	0.000032
ORF7b	37	H37G	CAT	GGC	1	6	P.1	0.000016
ORF7b	37	H37Q	caT	caA	1	6	P.1	0.000016
ORF7b	37	H37del	CAT	---	5	5	AY.43	0.000022
ORF7b	37	H37H	caT	caC	5	5	B.1	0.000046
ORF7b	37	H37del	CAT	---	5	5	B.1.1.25	0.002843
ORF7b	37	H37Y	Cat	Tat	5	5	B.1.160	0.000156
ORF7b	37	H37L	cAT	cTA	4	5	B.1.258	0.000266
ORF7b	37	H37L	cAt	cTt	1	5	B.1.258	0.000067
ORF7b	37	H37L	cAt	cTt	3	5	B.1.427	0.000151
ORF7b	37	H37L	cAT	cTA	2	5	B.1.427	0.000101
ORF7b	37	H37H	caT	caC	5	5	B.1.590	0.022727
ORF7b	37	H37R	cAt	cGt	5	5	B.1.637	0.000365
ORF7b	37	H37H	caT	caC	5	5	P.1	0.000079
ORF7b	37	H37D	Cat	Gat	4	5	P.1	0.000063
ORF7b	37	H37D	CaT	GaC	1	5	P.1	0.000016
ORF7b	37	H37del	CAT	---	4	4		0.222222
ORF7b	37	H37Y	Cat	Tat	4	4	AY.106	0.00134
ORF7b	37	H37del	CAT	---	4	4	AY.3	0.00004
ORF7b	37	H37Y	Cat	Tat	4	4	AY.43	0.000018
ORF7b	37	H37H	caT	caC	4	4	AY.47	0.000124
ORF7b	37	H37L	cAT	cTA	4	4	AY.53	0.00115
ORF7b	37	H37N	Cat	Aat	4	4	B.1	0.000037
ORF7b	37	H37del	CAT	---	4	4	B.1.1	0.000073
ORF7b	37	H37del	CAT	---	4	4	B.1.1.214	0.000222
ORF7b	37	H37L	cAt	cTt	4	4	B.1.1.317	0.001647
ORF7b	37	H37Y	Cat	Tat	4	4	B.1.1.37	0.000771
ORF7b	37	H37del	CAT	---	4	4	B.1.1.519	0.000159
ORF7b	37	H37Y	Cat	Tat	4	4	B.1.2	0.000035
ORF7b	37	H37L	cAt	cTt	3	4	P.1	0.000047
ORF7b	37	H37L	cAT	cTA	1	4	P.1	0.000016
ORF7b	37	H37L	cAt	cTt	3	3	A.2.3	0.014218
ORF7b	37	H37H	caT	caC	3	3	AY.102	0.00008
ORF7b	37	H37R	cAT	cGG	2	3	AY.103	0.000012
ORF7b	37	H37R	cAt	cGt	1	3	AY.103	0.000006
ORF7b	37	H37L	cAT	cTA	3	3	AY.16.1	0.00141
ORF7b	37	H37del	CAT	---	3	3	AY.25	0.000018
ORF7b	37	H37Y	Cat	Tat	3	3	AY.25	0.000018
ORF7b	37	H37Y	Cat	Tat	3	3	AY.3	0.00003
ORF7b	37	H37del	CAT	---	3	3	AY.39	0.000074
ORF7b	37	H37del	CAT	---	3	3	AY.48	0.001395
ORF7b	37	H37L	cAT	cTA	3	3	AY.65	0.001599
ORF7b	37	H37del	CAT	---	3	3	B.1	0.000027
ORF7b	37	H37R	cAt	cGt	3	3	B.1	0.000027
ORF7b	37	H37P	cAt	cCt	3	3	B.1.1.284	0.000322
ORF7b	37	H37R	cAt	cGt	3	3	B.1.1.524	0.0625
ORF7b	37	H37L	cAT	cTA	3	3	B.1.2	0.000026
ORF7b	37	H37R	cAt	cGt	3	3	B.1.2	0.000026
ORF7b	37	H37H	caT	caC	3	3	B.1.234	0.000396
ORF7b	37	H37R	cAt	cGt	3	3	B.1.258	0.0002
ORF7b	37	H37L	cAT	cTA	2	3	B.1.351	0.000059
ORF7b	37	H37L	cAt	cTt	1	3	B.1.351	0.00003
ORF7b	37	H37R	cAt	cGt	3	3	B.1.438.1	0.000322
ORF7b	37	H37L	cAt	cTt	3	3	B.1.470	0.004213
ORF7b	37	H37L	cAT	cTA	3	3	B.1.575	0.00091
ORF7b	37	H37del	CAT	---	3	3	B.1.617.2	0.000011
ORF7b	37	H37Y	Cat	Tat	3	3	P.1	0.000047
ORF7b	37	H37del	CAT	---	3	3	P.1.15	0.000697
ORF7b	37	H37S	CAt	AGt	2	2		0.111111
ORF7b	37	H37H	caT	caC	2	2		0.111111
ORF7b	37	H37del	CAT	---	2	2	A.2.2	0.003378
ORF7b	37	H37del	CAT	---	2	2	AD.2	0.000438
ORF7b	37	H37S	CAt	AGt	2	2	All	0
ORF7b	37	H37E	CaT	GaG	2	2	All	0
ORF7b	37	H37H	caT	caC	2	2	AY.117	0.000169
ORF7b	37	H37del	CAT	---	2	2	AY.118	0.000125
ORF7b	37	H37Y	Cat	Tat	2	2	AY.16.1	0.00094
ORF7b	37	H37R	cAt	cGt	2	2	AY.25	0.000012
ORF7b	37	H37Y	Cat	Tat	2	2	AY.26	0.000057
ORF7b	37	H37del	CAT	---	2	2	AY.30	0.000791
ORF7b	37	H37H	caT	caC	2	2	AY.39	0.000049
ORF7b	37	H37N	Cat	Aat	2	2	AY.4	0.000003
ORF7b	37	H37Y	Cat	Tat	2	2	AY.4	0.000003
ORF7b	37	H37del	CAT	---	2	2	AY.4.2	0.000043
ORF7b	37	H37H	caT	caC	2	2	AY.43	0.000009
ORF7b	37	H37P	cAt	cCt	2	2	AY.44	0.000012
ORF7b	37	H37H	caT	caC	2	2	AY.46	0.000208
ORF7b	37	H37del	CAT	---	2	2	AY.47	0.000062
ORF7b	37	H37Y	Cat	Tat	2	2	AY.49	0.00639
ORF7b	37	H37R	cAt	cGt	2	2	AY.5.4	0.000553
ORF7b	37	H37Y	Cat	Tat	2	2	AY.55	0.001835
ORF7b	37	H37L	cAT	cTA	1	2	AY.75	0.000056
ORF7b	37	H37L	cAt	cTt	1	2	AY.75	0.000056
ORF7b	37	H37del	CAT	---	2	2	AY.85	0.000854
ORF7b	37	H37R	cAt	cGt	2	2	AY.94	0.000885
ORF7b	37	H37P	cAt	cCt	2	2	B.1.1	0.000036
ORF7b	37	H37R	cAt	cGt	2	2	B.1.1	0.000036
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.1	0.000036
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.1.222	0.000408
ORF7b	37	H37L	cAt	cTt	1	2	B.1.1.265	0.003155
ORF7b	37	H37L	cAT	cTA	1	2	B.1.1.265	0.003155
ORF7b	37	H37L	cAt	cTt	2	2	B.1.1.318	0.000604
ORF7b	37	H37del	CAT	---	2	2	B.1.1.373	0.047619
ORF7b	37	H37L	cAT	cTA	2	2	B.1.1.409	0.005666
ORF7b	37	H37L	cAT	cTA	2	2	B.1.1.440	0.023529
ORF7b	37	H37R	cAt	cGt	2	2	B.1.1.519	0.000079
ORF7b	37	H37del2	cAT	c--	2	2	B.1.1.7	0.000002
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.1.83	0.00542
ORF7b	37	H37L	cAT	cTA	1	2	B.1.110.3	0.000718
ORF7b	37	H37L	cAt	cTt	1	2	B.1.110.3	0.000718
ORF7b	37	H37L	cAT	cTA	2	2	B.1.111	0.00235
ORF7b	37	H37H	caT	caC	2	2	B.1.177	0.000026
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.177	0.000026
ORF7b	37	H37del	CAT	---	2	2	B.1.177	0.000026
ORF7b	37	H37del2	CAt	--t	2	2	B.1.177.12	0.000303
ORF7b	37	H37L	cAt	cTt	1	2	B.1.177.7	0.000165
ORF7b	37	H37L	cAT	cTA	1	2	B.1.177.7	0.000165
ORF7b	37	H37N	Cat	Aat	2	2	B.1.2	0.000018
ORF7b	37	H37H	caT	caC	2	2	B.1.2	0.000018
ORF7b	37	H37H	caT	caC	2	2	B.1.243	0.000139
ORF7b	37	H37L	cAt	cTt	1	2	B.1.243	0.00007
ORF7b	37	H37L	cAT	cTA	1	2	B.1.243	0.00007
ORF7b	37	H37Y	Cat	Tat	1	2	B.1.258	0.000067
ORF7b	37	H37Y	CaT	TaC	1	2	B.1.258	0.000067
ORF7b	37	H37L	cAT	cTA	1	2	B.1.279	0.000514
ORF7b	37	H37L	cAt	cTt	1	2	B.1.279	0.000514
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.351	0.000059
ORF7b	37	H37del	CAT	---	2	2	B.1.36	0.000292
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.36	0.000292
ORF7b	37	H37R	cAt	cGt	2	2	B.1.36.29	0.001035
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.36.38	0.003284
ORF7b	37	H37L	cAt	cTt	1	2	B.1.36.39	0.002217
ORF7b	37	H37L	cAT	cTA	1	2	B.1.36.39	0.002217
ORF7b	37	H37del	CAT	---	2	2	B.1.427	0.000101
ORF7b	37	H37N	Cat	Aat	2	2	B.1.429	0.000047
ORF7b	37	H37L	cAT	cTA	2	2	B.1.466.2	0.000782
ORF7b	37	H37del	CAT	---	2	2	B.1.526	0.000047
ORF7b	37	H37L	cAt	cTt	2	2	B.1.568	0.002222
ORF7b	37	H37del	CAT	---	2	2	B.1.582	0.000981
ORF7b	37	H37Y	Cat	Tat	2	2	B.1.600	0.011696
ORF7b	37	H37L	cAt	cTt	1	2	B.1.609	0.000479
ORF7b	37	H37L	cAT	cTA	1	2	B.1.609	0.000479
ORF7b	37	H37R	cAt	cGt	2	2	B.1.617.1	0.000258
ORF7b	37	H37L	cAT	cTA	2	2	B.1.623	0.001073
ORF7b	37	H37L	cAt	cTt	2	2	B.1.9.5	0.011364
ORF7b	37	H37H	caT	caC	2	2	C.37	0.000232
ORF7b	37	H37E	CaT	GaG	2	2	P.1	0.000032
ORF7b	37	H37del	CAT	---	2	2	P.1.1	0.000635
ORF7b	37	H37del	CAT	---	2	2	P.1.14	0.000096
ORF7b	37	H37R	cAt	cGt	2	2	P.1.4	0.001953
ORF7b	37	H37del	CAT	---	1	1	A.1	0.000282
ORF7b	37	H37H	caT	caC	1	1	A.1	0.000282
ORF7b	37	H37Y	Cat	Tat	1	1	A.1	0.000282
ORF7b	37	H37L	cAT	cTA	1	1	A.2	0.000662
ORF7b	37	H37N	Cat	Aat	1	1	A.2.5	0.000499
ORF7b	37	H37del	CAT	---	1	1	A.23.1	0.000704
ORF7b	37	H37Y	Cat	Tat	1	1	A.5	0.001923
ORF7b	37	H37L	cAT	cTA	1	1	A.5	0.001923
ORF7b	37	H37L	cAT	cTA	1	1	AD.2	0.000219
ORF7b	37	H37X	CaT	TaA	1	1	All	0
ORF7b	37	H37del	CAT	---	1	1	AY.102	0.000027
ORF7b	37	H37L	cAt	cTt	1	1	AY.102	0.000027
ORF7b	37	H37H	caT	caC	1	1	AY.103	0.000006
ORF7b	37	H37L	cAt	cTt	1	1	AY.103	0.000006
ORF7b	37	H37del	CAT	---	1	1	AY.108	0.001103
ORF7b	37	H37N	Cat	Aat	1	1	AY.116.1	0.000311
ORF7b	37	H37R	cAt	cGt	1	1	AY.116.1	0.000311
ORF7b	37	H37R	cAt	cGt	1	1	AY.117	0.000085
ORF7b	37	H37del	CAT	---	1	1	AY.121	0.000135
ORF7b	37	H37L	cAt	cTt	1	1	AY.16	0.00038
ORF7b	37	H37N	Cat	Aat	1	1	AY.20	0.000039
ORF7b	37	H37R	cAt	cGt	1	1	AY.20	0.000039
ORF7b	37	H37Y	Cat	Tat	1	1	AY.23	0.00007
ORF7b	37	H37R	cAt	cGt	1	1	AY.23	0.00007
ORF7b	37	H37Q	caT	caA	1	1	AY.23	0.00007
ORF7b	37	H37R	cAt	cGt	1	1	AY.24	0.000431
ORF7b	37	H37P	cAt	cCt	1	1	AY.25	0.000006
ORF7b	37	H37N	Cat	Aat	1	1	AY.25	0.000006
ORF7b	37	H37L	cAT	cTA	1	1	AY.26	0.000028
ORF7b	37	H37del	CAT	---	1	1	AY.26	0.000028
ORF7b	37	H37L	cAt	cTt	1	1	AY.29	0.000016
ORF7b	37	H37P	cAt	cCt	1	1	AY.3	0.00001
ORF7b	37	H37R	cAt	cGt	1	1	AY.3.1	0.000085
ORF7b	37	H37Y	Cat	Tat	1	1	AY.3.1	0.000085
ORF7b	37	H37L	cAT	cTA	1	1	AY.38	0.000499
ORF7b	37	H37R	cAt	cGt	1	1	AY.38	0.000499
ORF7b	37	H37N	Cat	Aat	1	1	AY.39	0.000025
ORF7b	37	H37R	cAt	cGt	1	1	AY.39	0.000025
ORF7b	37	H37del	CAT	---	1	1	AY.39.1	0.00004
ORF7b	37	H37N	Cat	Aat	1	1	AY.39.1	0.00004
ORF7b	37	H37R	cAt	cGt	1	1	AY.4.2	0.000022
ORF7b	37	H37del	CAT	---	1	1	AY.4.5	0.000107
ORF7b	37	H37Y	Cat	Tat	1	1	AY.4.5	0.000107
ORF7b	37	H37L	cAt	cTt	1	1	AY.43	0.000004
ORF7b	37	H37H	caT	caC	1	1	AY.44	0.000006
ORF7b	37	H37Y	Cat	Tat	1	1	AY.47	0.000031
ORF7b	37	H37H	caT	caC	1	1	AY.48	0.000465
ORF7b	37	H37H	caT	caC	1	1	AY.5	0.000021
ORF7b	37	H37R	cAt	cGt	1	1	AY.54	0.000095
ORF7b	37	H37L	cAT	cTA	1	1	AY.54	0.000095
ORF7b	37	H37del	CAT	---	1	1	AY.55	0.000917
ORF7b	37	H37del	CAT	---	1	1	AY.58	0.000907
ORF7b	37	H37del	CAT	---	1	1	AY.6	0.000041
ORF7b	37	H37L	cAt	cTt	1	1	AY.6	0.000041
ORF7b	37	H37P	cAt	cCt	1	1	AY.60	0.000938
ORF7b	37	H37L	cAt	cTt	1	1	AY.61	0.000105
ORF7b	37	H37Y	Cat	Tat	1	1	AY.61	0.000105
ORF7b	37	H37H	caT	caC	1	1	AY.61	0.000105
ORF7b	37	H37H	caT	caC	1	1	AY.62	0.000436
ORF7b	37	H37del	CAT	---	1	1	AY.67	0.000464
ORF7b	37	H37Y	Cat	Tat	1	1	AY.68	0.000274
ORF7b	37	H37N	Cat	Aat	1	1	AY.7	0.000196
ORF7b	37	H37del2	cAT	c--	1	1	AY.71	0.000475
ORF7b	37	H37Y	Cat	Tat	1	1	AY.74	0.000116
ORF7b	37	H37Q	caT	caA	1	1	AY.75	0.000056
ORF7b	37	H37del	CAT	---	1	1	AY.75	0.000056
ORF7b	37	H37R	cAt	cGt	1	1	AY.75	0.000056
ORF7b	37	H37N	Cat	Aat	1	1	AY.75.1	0.00018
ORF7b	37	H37del	CAT	---	1	1	AY.84	0.000437
ORF7b	37	H37Q	caT	caG	1	1	AY.9.2	0.000037
ORF7b	37	H37L	cAT	cTA	1	1	AY.9.2	0.000037
ORF7b	37	H37Y	Cat	Tat	1	1	AY.9.2	0.000037
ORF7b	37	H37H	caT	caC	1	1	AY.92	0.000287
ORF7b	37	H37del	CAT	---	1	1	AY.99	0.001049
ORF7b	37	H37N	Cat	Aat	1	1	AZ.1	0.000867
ORF7b	37	H37H	caT	caC	1	1	AZ.2	0.000821
ORF7b	37	H37P	cAt	cCt	1	1	B.1	0.000009
ORF7b	37	H37del1	caT	ca-	1	1	B.1	0.000009
ORF7b	37	H37del1	cAt	c-t	1	1	B.1.1	0.000018
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.1.1	0.000327
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.1.174	0.003378
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.1.194	0.00495
ORF7b	37	H37del	CAT	---	1	1	B.1.1.216	0.00089
ORF7b	37	H37R	cAt	cGt	1	1	B.1.1.222	0.000204
ORF7b	37	H37L	cAT	cTA	1	1	B.1.1.232	0.001815
ORF7b	37	H37Q	caT	caA	1	1	B.1.1.265	0.003155
ORF7b	37	H37L	cAT	cTA	1	1	B.1.1.28	0.000311
ORF7b	37	H37P	cAt	cCt	1	1	B.1.1.282	0.011628
ORF7b	37	H37del2	cAT	c--	1	1	B.1.1.284	0.000107
ORF7b	37	H37L	cAT	cTA	1	1	B.1.1.286	0.002899
ORF7b	37	H37H	caT	caC	1	1	B.1.1.294	0.001266
ORF7b	37	H37R	cAt	cGt	1	1	B.1.1.294	0.001266
ORF7b	37	H37del	CAT	---	1	1	B.1.1.306	0.000438
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.1.306	0.000438
ORF7b	37	H37L	cAt	cTt	1	1	B.1.1.306	0.000438
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.1.311	0.000358
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.1.318	0.000302
ORF7b	37	H37R	cAt	cGt	1	1	B.1.1.329	0.003846
ORF7b	37	H37R	cAt	cGt	1	1	B.1.1.33	0.000421
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.1.39	0.00051
ORF7b	37	H37del	CAT	---	1	1	B.1.1.44	0.00241
ORF7b	37	H37L	cAT	cTA	1	1	B.1.1.51	0.001718
ORF7b	37	H37del2	cAT	c--	1	1	B.1.1.519	0.00004
ORF7b	37	H37L	cAt	cTt	1	1	B.1.1.519	0.00004
ORF7b	37	H37L	cAt	cTt	1	1	B.1.1.54	0.003021
ORF7b	37	H37P	cAt	cCt	1	1	B.1.1.7	0.000001
ORF7b	37	H37D	Cat	Gat	1	1	B.1.1.7	0.000001
ORF7b	37	H37L	cAT	cTA	1	1	B.1.1.70	0.000341
ORF7b	37	H37N	Cat	Aat	1	1	B.1.1.89	0.006061
ORF7b	37	H37L	cAT	cTA	1	1	B.1.108	0.005814
ORF7b	37	H37Q	caT	caA	1	1	B.1.110.3	0.000718
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.111	0.001175
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.126	0.001276
ORF7b	37	H37H	caT	caC	1	1	B.1.160	0.000031
ORF7b	37	H37N	Cat	Aat	1	1	B.1.160	0.000031
ORF7b	37	H37Q	caT	caA	1	1	B.1.177	0.000013
ORF7b	37	H37L	cAT	cTA	1	1	B.1.177.12	0.000152
ORF7b	37	H37del	CAT	---	1	1	B.1.177.15	0.000631
ORF7b	37	H37N	Cat	Aat	1	1	B.1.177.17	0.000821
ORF7b	37	H37Q	caT	caA	1	1	B.1.177.17	0.000821
ORF7b	37	H37L	cAT	cTA	1	1	B.1.177.17	0.000821
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.177.23	0.003236
ORF7b	37	H37L	cAt	cTt	1	1	B.1.177.63	0.002703
ORF7b	37	H37del	CAT	---	1	1	B.1.177.7	0.000165
ORF7b	37	H37Q	caT	caA	1	1	B.1.177.7	0.000165
ORF7b	37	H37L	cAT	cTA	1	1	B.1.177.72	0.00339
ORF7b	37	H37N	Cat	Aat	1	1	B.1.177.75	0.001041
ORF7b	37	H37L	cAT	cTA	1	1	B.1.177.83	0.001481
ORF7b	37	H37del	CAT	---	1	1	B.1.177.83	0.001481
ORF7b	37	H37del	CAT	---	1	1	B.1.195	0.005025
ORF7b	37	H37P	cAt	cCt	1	1	B.1.2	0.000009
ORF7b	37	H37L	cAT	cTA	1	1	B.1.214	0.003663
ORF7b	37	H37L	cAT	cTA	1	1	B.1.232	0.000537
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.233	0.014085
ORF7b	37	H37del	CAT	---	1	1	B.1.234	0.000132
ORF7b	37	H37H	caT	caC	1	1	B.1.241	0.000812
ORF7b	37	H37X	CaT	TaA	1	1	B.1.243	0.00007
ORF7b	37	H37N	Cat	Aat	1	1	B.1.243	0.00007
ORF7b	37	H37Q	caT	caA	1	1	B.1.243	0.00007
ORF7b	37	H37Q	caT	caA	1	1	B.1.258	0.000067
ORF7b	37	H37del	CAT	---	1	1	B.1.258.14	0.00098
ORF7b	37	H37R	cAt	cGt	1	1	B.1.258.17	0.000104
ORF7b	37	H37L	cAT	cTA	1	1	B.1.258.17	0.000104
ORF7b	37	H37L	cAT	cTA	1	1	B.1.264	0.012346
ORF7b	37	H37Q	caT	caA	1	1	B.1.279	0.000514
ORF7b	37	H37L	cAt	cTt	1	1	B.1.311	0.000275
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.311	0.000275
ORF7b	37	H37P	cAt	cCt	1	1	B.1.351	0.00003
ORF7b	37	H37L	cAT	cTA	1	1	B.1.356	0.001727
ORF7b	37	H37N	Cat	Aat	1	1	B.1.36	0.000146
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.36.22	0.001208
ORF7b	37	H37L	cAT	cTA	1	1	B.1.36.29	0.000517
ORF7b	37	H37Q	caT	caA	1	1	B.1.36.39	0.002217
ORF7b	37	H37del	CAT	---	1	1	B.1.369	0.000285
ORF7b	37	H37del	CAT	---	1	1	B.1.400	0.000429
ORF7b	37	H37del	CAT	---	1	1	B.1.429	0.000024
ORF7b	37	H37del	CAT	---	1	1	B.1.468	0.005714
ORF7b	37	H37del	CAT	---	1	1	B.1.499	0.00105
ORF7b	37	H37R	cAt	cGt	1	1	B.1.509	0.000866
ORF7b	37	H37R	cAt	cGt	1	1	B.1.525	0.000113
ORF7b	37	H37N	Cat	Aat	1	1	B.1.526	0.000024
ORF7b	37	H37P	cAt	cCt	1	1	B.1.526	0.000024
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.526	0.000024
ORF7b	37	H37R	cAt	cGt	1	1	B.1.560	0.00463
ORF7b	37	H37N	Cat	Aat	1	1	B.1.564	0.000426
ORF7b	37	H37L	cAt	cTt	1	1	B.1.565	0.00081
ORF7b	37	H37N	Cat	Aat	1	1	B.1.596	0.000087
ORF7b	37	H37Q	caT	caA	1	1	B.1.596	0.000087
ORF7b	37	H37G	CAT	GGC	1	1	B.1.617.2	0.000004
ORF7b	37	H37Y	Cat	Tat	1	1	B.1.620	0.000946
ORF7b	37	H37del	CAT	---	1	1	B.1.630	0.005236
ORF7b	37	H37R	cAt	cGt	1	1	B.6.6	0.000889
ORF7b	37	H37L	cAt	cTt	1	1	C.1.2	0.004255
ORF7b	37	H37Y	Cat	Tat	1	1	C.16	0.00106
ORF7b	37	H37del	CAT	---	1	1	C.26	0.007353
ORF7b	37	H37Y	Cat	Tat	1	1	C.37	0.000116
ORF7b	37	H37del	CAT	---	1	1	C.37	0.000116
ORF7b	37	H37L	cAT	cTA	1	1	C.37	0.000116
ORF7b	37	H37L	cAT	cTA	1	1	D.2	0.000075
ORF7b	37	H37H	caT	caC	1	1	N.5	0.001767
ORF7b	37	H37H	caT	caC	1	1	P.1.14	0.000048
ORF7b	37	H37Y	Cat	Tat	1	1	P.1.14	0.000048
ORF7b	37	H37R	cAt	cGt	1	1	P.1.2	0.001156
ORF7b	37	H37H	caT	caC	1	1	P.1.7	0.000319
ORF7b	37	H37R	cAt	cGt	1	1	P.4	0.003802
ORF7b	37	H37Y	Cat	Tat	1	1	Q.1	0.000126
ORF7b	37	H37H	caT	caC	1	1	Q.8	0.000165
ORF7b	37	H37L	cAT	cTA	1	1	Q.8	0.000165
ORF7b	37	H37Y	Cat	Tat	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.