CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 33 & Codon = gCa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b33E33AnonsyngAagCa2082070.99519227852-27854

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b33E33AgAagCa207208All0.00004
ORF7b33E33AgAagCa168168N.91
ORF7b33E33AgAagCa1010B.1.1.330.004209
ORF7b33E33AgAagCa77B.1.1.3930.777778
ORF7b33E33AgAagCa22AY.90.000135
ORF7b33E33AgAagCa12B.10.000009
ORF7b33E33AgAagCa22B.1.1.280.000622
ORF7b33E33AgAagCa22B.1.1.70.000002
ORF7b33E33AgAagCa22B.1.20.000018
ORF7b33E33AgAagCa22N.60.014184
ORF7b33E33AgAagCa11AY.1000.000046
ORF7b33E33AgAagCa11AY.1020.000027
ORF7b33E33AgAagCa11AY.250.000006
ORF7b33E33AgAagCa11AY.400.000964
ORF7b33E33AgAagCa11AY.440.000006
ORF7b33E33AgAagCa11AY.620.000436
ORF7b33E33AgAagCa11B.1.10.000018
ORF7b33E33AgAagCa11B.1.177.60.000977
ORF7b33E33AgAagCa11B.1.5940.03125
ORF7b33E33AgAagCa11B.1.617.20.000004
ORF7b33E33AgAagCa11N.10.016949

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.