CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 33 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b33E33deldelGAA---365365127852-27854

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b33E33delGAA---365365All0.00007
ORF7b33E33delGAA---6262AY.40.000096
ORF7b33E33delGAA---5151B.1.1.70.000046
ORF7b33E33delGAA---5050B.1.2430.003479
ORF7b33E33delGAA---3737AY.290.000584
ORF7b33E33delGAA---1717B0.002173
ORF7b33E33delGAA---1111B.1.20.000097
ORF7b33E33delGAA---88AY.440.000049
ORF7b33E33delGAA---88B.1.1.2650.025237
ORF7b33E33delGAA---77AY.1030.000043
ORF7b33E33delGAA---77B.1.10.000127
ORF7b33E33delGAA---660.333333
ORF7b33E33delGAA---66AY.29.10.001323
ORF7b33E33delGAA---55AY.430.000022
ORF7b33E33delGAA---44AY.30.00004
ORF7b33E33delGAA---44B.1.1.2140.000222
ORF7b33E33delGAA---44B.1.1.5190.000159
ORF7b33E33delGAA---33AY.1180.000188
ORF7b33E33delGAA---33AY.250.000018
ORF7b33E33delGAA---33AY.390.000074
ORF7b33E33delGAA---33AY.470.000093
ORF7b33E33delGAA---33B.10.000027
ORF7b33E33delGAA---33B.1.617.20.000011
ORF7b33E33delGAA---33P.1.150.000697
ORF7b33E33delGAA---22A.2.20.003378
ORF7b33E33delGAA---22AD.20.000438
ORF7b33E33delGAA---22AY.300.000791
ORF7b33E33delGAA---22AY.480.00093
ORF7b33E33delGAA---22AY.850.000854
ORF7b33E33delGAA---22B.1.1.2160.001781
ORF7b33E33delGAA---22B.1.1770.000026
ORF7b33E33delGAA---22B.1.177.120.000303
ORF7b33E33delGAA---22B.1.360.000292
ORF7b33E33delGAA---22B.1.4270.000101
ORF7b33E33delGAA---22B.1.5260.000047
ORF7b33E33delGAA---22B.1.5820.000981
ORF7b33E33delGAA---22P.1.10.000635
ORF7b33E33delGAA---22P.1.140.000096
ORF7b33E33delGAA---11A.10.000282
ORF7b33E33delGAA---11A.23.10.000704
ORF7b33E33delGAA---11AY.1020.000027
ORF7b33E33delGAA---11AY.1080.001103
ORF7b33E33delGAA---11AY.200.000039
ORF7b33E33delGAA---11AY.260.000028
ORF7b33E33delGAA---11AY.39.10.00004
ORF7b33E33delGAA---11AY.4.20.000022
ORF7b33E33delGAA---11AY.550.000917
ORF7b33E33delGAA---11AY.580.000907
ORF7b33E33delGAA---11AY.60.000041
ORF7b33E33delGAA---11AY.670.000464
ORF7b33E33delGAA---11AY.750.000056
ORF7b33E33delGAA---11AY.840.000437
ORF7b33E33delGAA---11AY.990.001049
ORF7b33E33delGAA---11B.1.1.440.00241
ORF7b33E33delGAA---11B.1.177.150.000631
ORF7b33E33delGAA---11B.1.177.830.001481
ORF7b33E33delGAA---11B.1.1950.005025
ORF7b33E33delGAA---11B.1.2340.000132
ORF7b33E33delGAA---11B.1.258.140.00098
ORF7b33E33delGAA---11B.1.3690.000285
ORF7b33E33delGAA---11B.1.4000.000429
ORF7b33E33delGAA---11B.1.4290.000024
ORF7b33E33delGAA---11B.1.4680.005714
ORF7b33E33delGAA---11B.1.4990.00105
ORF7b33E33delGAA---11B.1.6300.005236
ORF7b33E33delGAA---11C.370.000116
ORF7b33E33delGAA---11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.