CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 33

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7b	33	E33V		nonsyn	gAa	gTa	3655	3655	1	27852-27854
ORF7b	33	E33X		nonsyn	Gaa	Taa	1699	1698	0.999411	27852-27854
ORF7b	33	E33X		nonsyn	GaA	TaG	1699	1	0.000588581	27852-27854
ORF7b	33	E33G		nonsyn	gAa	gGa	559	557	0.996422	27852-27854
ORF7b	33	E33G		nonsyn	gAA	gGG	559	1	0.00178891	27852-27854
ORF7b	33	E33G		nonsyn	gAA	gGT	559	1	0.00178891	27852-27854
ORF7b	33	E33del		del	GAA	---	365	365	1	27852-27854
ORF7b	33	E33A		nonsyn	gAa	gCa	208	207	0.995192	27852-27854
ORF7b	33	E33A		nonsyn	gAA	gCC	208	1	0.00480769	27852-27854
ORF7b	33	E33K		nonsyn	Gaa	Aaa	199	199	1	27852-27854
ORF7b	33	E33E		syn	gaA	gaG	83	83	1	27852-27854
ORF7b	33	E33Q		nonsyn	Gaa	Caa	32	30	0.9375	27852-27854
ORF7b	33	E33Q		nonsyn	GaA	CaG	32	2	0.0625	27852-27854
ORF7b	33	E33D		nonsyn	gaA	gaT	27	19	0.703704	27852-27854
ORF7b	33	E33D		nonsyn	gaA	gaC	27	8	0.296296	27852-27854
ORF7b	33	E33del1		del	gaA	ga-	5	3	0.6	27852-27854
ORF7b	33	E33del1		del	Gaa	-aa	5	1	0.2	27852-27854
ORF7b	33	E33del1		del	gAa	g-a	5	1	0.2	27852-27854
ORF7b	33	E33I		nonsyn	GAa	ATa	4	4	1	27852-27854
ORF7b	33	E33Y		nonsyn	GaA	TaT	3	2	0.666667	27852-27854
ORF7b	33	E33Y		nonsyn	GaA	TaC	3	1	0.333333	27852-27854
ORF7b	33	E33L		nonsyn	GAA	CTT	3	1	0.333333	27852-27854
ORF7b	33	E33L		nonsyn	GAA	CTG	3	1	0.333333	27852-27854
ORF7b	33	E33L		nonsyn	GAa	CTa	3	1	0.333333	27852-27854
ORF7b	33	E33F		nonsyn	GAA	TTT	1	1	1	27852-27854
ORF7b	33	E33H		nonsyn	GaA	CaT	1	1	1	27852-27854
ORF7b	33	E33T		nonsyn	GAa	ACa	1	1	1	27852-27854
ORF7b	33	E33W		nonsyn	GAA	TGG	1	1	1	27852-27854
ORF7b	33	E33C		nonsyn	GAA	TGT	1	1	1	27852-27854
ORF7b	33	E33N		nonsyn	GaA	AaT	1	1	1	27852-27854
ORF7b	33	E33P		nonsyn	GAa	CCa	1	1	1	27852-27854
ORF7b	33	E33S		nonsyn	GAA	AGT	1	1	1	27852-27854

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7b	33	E33V	gAa	gTa	3655	3655	All	0.000699
ORF7b	33	E33V	gAa	gTa	3253	3253	AY.14	0.286305
ORF7b	33	E33X	Gaa	Taa	1698	1699	All	0.000325
ORF7b	33	E33X	GaA	TaG	1	1699	All	0
ORF7b	33	E33G	gAa	gGa	557	559	All	0.000107
ORF7b	33	E33G	gAA	gGT	1	559	All	0
ORF7b	33	E33G	gAA	gGG	1	559	All	0
ORF7b	33	E33G	gAa	gGa	469	469	AY.103	0.002912
ORF7b	33	E33del	GAA	---	365	365	All	0.00007
ORF7b	33	E33X	Gaa	Taa	362	362	B.1.36.17	0.178854
ORF7b	33	E33X	Gaa	Taa	217	217	AY.4	0.000338
ORF7b	33	E33X	Gaa	Taa	217	217	B.1.618	0.875
ORF7b	33	E33A	gAa	gCa	207	208	All	0.00004
ORF7b	33	E33A	gAA	gCC	1	208	All	0
ORF7b	33	E33K	Gaa	Aaa	199	199	All	0.000038
ORF7b	33	E33A	gAa	gCa	168	168	N.9	1
ORF7b	33	E33X	Gaa	Taa	141	141	B.1.1.7	0.000126
ORF7b	33	E33X	Gaa	Taa	139	139	B.1.232	0.074691
ORF7b	33	E33E	gaA	gaG	83	83	All	0.000016
ORF7b	33	E33V	gAa	gTa	75	75	B.1.617.2	0.000282
ORF7b	33	E33X	Gaa	Taa	71	71	AY.9	0.004799
ORF7b	33	E33del	GAA	---	62	62	AY.4	0.000096
ORF7b	33	E33K	Gaa	Aaa	62	62	B.1.1.348	0.049363
ORF7b	33	E33V	gAa	gTa	52	52	AY.19	0.059293
ORF7b	33	E33del	GAA	---	51	51	B.1.1.7	0.000046
ORF7b	33	E33del	GAA	---	50	50	B.1.243	0.003479
ORF7b	33	E33X	Gaa	Taa	49	49	B.1	0.000449
ORF7b	33	E33K	Gaa	Aaa	49	49	B.1.1.7	0.000044
ORF7b	33	E33V	gAa	gTa	42	42	AY.54	0.004005
ORF7b	33	E33X	Gaa	Taa	40	40	AY.3	0.000398
ORF7b	33	E33X	Gaa	Taa	38	38	B.1.160	0.001185
ORF7b	33	E33del	GAA	---	37	37	AY.29	0.000584
ORF7b	33	E33X	Gaa	Taa	37	37	AY.43	0.000164
ORF7b	33	E33Q	Gaa	Caa	30	32	All	0.000006
ORF7b	33	E33Q	GaA	CaG	2	32	All	0
ORF7b	33	E33G	gAa	gGa	32	32	B.1.1.7	0.000029
ORF7b	33	E33X	Gaa	Taa	29	29	P.2	0.005412
ORF7b	33	E33V	gAa	gTa	28	28	AY.38	0.013979
ORF7b	33	E33D	gaA	gaT	19	27	All	0.000004
ORF7b	33	E33D	gaA	gaC	8	27	All	0.000002
ORF7b	33	E33V	gAa	gTa	25	25	AY.44	0.000152
ORF7b	33	E33X	Gaa	Taa	22	22	B.1.617.2	0.000083
ORF7b	33	E33V	gAa	gTa	20	20	AY.98	0.00158
ORF7b	33	E33K	Gaa	Aaa	19	19	B.1.617.2	0.000072
ORF7b	33	E33del	GAA	---	17	17	B	0.002173
ORF7b	33	E33V	gAa	gTa	16	16	AY.13	0.002576
ORF7b	33	E33E	gaA	gaG	16	16	B.1.2	0.000141
ORF7b	33	E33X	Gaa	Taa	15	15	B.1.582	0.00736
ORF7b	33	E33X	Gaa	Taa	14	14	B.1.2	0.000123
ORF7b	33	E33Q	Gaa	Caa	13	13	AY.103	0.000081
ORF7b	33	E33V	gAa	gTa	13	13	AY.4	0.00002
ORF7b	33	E33E	gaA	gaG	13	13	AY.61	0.001362
ORF7b	33	E33V	gAa	gTa	13	13	AY.78	0.020031
ORF7b	33	E33X	Gaa	Taa	13	13	B.1.1	0.000236
ORF7b	33	E33X	Gaa	Taa	12	13	B.1.1.33	0.005051
ORF7b	33	E33X	GaA	TaG	1	13	B.1.1.33	0.000421
ORF7b	33	E33X	Gaa	Taa	13	13	B.1.167	0.101562
ORF7b	33	E33X	Gaa	Taa	13	13	C.16	0.013786
ORF7b	33	E33X	Gaa	Taa	12	12	AY.47	0.000373
ORF7b	33	E33V	gAa	gTa	11	11	AY.64	0.006548
ORF7b	33	E33E	gaA	gaG	11	11	B.1.1.519	0.000437
ORF7b	33	E33del	GAA	---	11	11	B.1.2	0.000097
ORF7b	33	E33G	gAa	gGa	10	10	AY.44	0.000061
ORF7b	33	E33E	gaA	gaG	10	10	AY.44	0.000061
ORF7b	33	E33A	gAa	gCa	10	10	B.1.1.33	0.004209
ORF7b	33	E33X	Gaa	Taa	10	10	B.1.1.39	0.005097
ORF7b	33	E33X	Gaa	Taa	10	10	B.1.177	0.000132
ORF7b	33	E33X	Gaa	Taa	10	10	B.1.346	0.013106
ORF7b	33	E33X	Gaa	Taa	9	9	AY.25	0.000054
ORF7b	33	E33D	gaA	gaT	9	9	P.1	0.000142
ORF7b	33	E33K	Gaa	Aaa	8	8	AY.4	0.000012
ORF7b	33	E33del	GAA	---	8	8	AY.44	0.000049
ORF7b	33	E33V	gAa	gTa	8	8	AY.75.1	0.001442
ORF7b	33	E33del	GAA	---	8	8	B.1.1.265	0.025237
ORF7b	33	E33X	Gaa	Taa	8	8	B.1.1.306	0.003507
ORF7b	33	E33X	Gaa	Taa	8	8	B.1.177.43	0.011817
ORF7b	33	E33del	GAA	---	7	7	AY.103	0.000043
ORF7b	33	E33X	Gaa	Taa	7	7	AY.23	0.000488
ORF7b	33	E33K	Gaa	Aaa	7	7	AY.25	0.000042
ORF7b	33	E33V	gAa	gTa	7	7	AY.43	0.000031
ORF7b	33	E33del	GAA	---	7	7	B.1.1	0.000127
ORF7b	33	E33A	gAa	gCa	7	7	B.1.1.393	0.777778
ORF7b	33	E33X	Gaa	Taa	7	7	B.1.1.63	0.002701
ORF7b	33	E33K	Gaa	Aaa	7	7	C.23	0.040698
ORF7b	33	E33del	GAA	---	6	6		0.333333
ORF7b	33	E33X	Gaa	Taa	6	6	AY.103	0.000037
ORF7b	33	E33del	GAA	---	6	6	AY.29.1	0.001323
ORF7b	33	E33X	Gaa	Taa	6	6	AY.39	0.000148
ORF7b	33	E33V	gAa	gTa	6	6	AY.62	0.002614
ORF7b	33	E33V	gAa	gTa	6	6	AY.68	0.001642
ORF7b	33	E33K	Gaa	Aaa	6	6	B.1.1	0.000109
ORF7b	33	E33V	gAa	gTa	6	6	B.1.177	0.000079
ORF7b	33	E33X	Gaa	Taa	6	6	B.1.258	0.000399
ORF7b	33	E33X	Gaa	Taa	6	6	B.1.525	0.000679
ORF7b	33	E33X	Gaa	Taa	6	6	B.1.526	0.000141
ORF7b	33	E33X	Gaa	Taa	6	6	P.1	0.000095
ORF7b	33	E33del1	gaA	ga-	3	5	All	0.000001
ORF7b	33	E33del1	gAa	g-a	1	5	All	0
ORF7b	33	E33del1	Gaa	-aa	1	5	All	0
ORF7b	33	E33V	gAa	gTa	5	5	AY.102	0.000133
ORF7b	33	E33E	gaA	gaG	5	5	AY.4	0.000008
ORF7b	33	E33del	GAA	---	5	5	AY.43	0.000022
ORF7b	33	E33K	Gaa	Aaa	5	5	AY.44	0.00003
ORF7b	33	E33K	Gaa	Aaa	5	5	B.1	0.000046
ORF7b	33	E33D	gaA	gaC	4	5	B.1.1.7	0.000004
ORF7b	33	E33D	gaA	gaT	1	5	B.1.1.7	0.000001
ORF7b	33	E33X	Gaa	Taa	5	5	B.1.351	0.000149
ORF7b	33	E33X	Gaa	Taa	5	5	B.1.36	0.00073
ORF7b	33	E33X	Gaa	Taa	5	5	B.1.36.31	0.008757
ORF7b	33	E33X	Gaa	Taa	5	5	B.1.429	0.000118
ORF7b	33	E33D	gaA	gaT	5	5	B.1.526	0.000118
ORF7b	33	E33G	gAa	gGa	5	5	B.1.617.2	0.000019
ORF7b	33	E33Q	Gaa	Caa	4	5	B.1.617.2	0.000015
ORF7b	33	E33Q	GaA	CaG	1	5	B.1.617.2	0.000004
ORF7b	33	E33I	GAa	ATa	4	4	All	0.000001
ORF7b	33	E33G	gAa	gGa	4	4	AY.25	0.000024
ORF7b	33	E33del	GAA	---	4	4	AY.3	0.00004
ORF7b	33	E33G	gAa	gGa	4	4	AY.4	0.000006
ORF7b	33	E33X	Gaa	Taa	4	4	AY.44	0.000024
ORF7b	33	E33X	Gaa	Taa	4	4	AY.51	0.003636
ORF7b	33	E33V	gAa	gTa	4	4	AY.75	0.000224
ORF7b	33	E33E	gaA	gaG	4	4	B.1	0.000037
ORF7b	33	E33V	gAa	gTa	4	4	B.1.1	0.000073
ORF7b	33	E33del	GAA	---	4	4	B.1.1.214	0.000222
ORF7b	33	E33X	Gaa	Taa	4	4	B.1.1.28	0.001245
ORF7b	33	E33G	gAa	gGa	2	4	B.1.1.33	0.000842
ORF7b	33	E33G	gAA	gGT	1	4	B.1.1.33	0.000421
ORF7b	33	E33G	gAA	gGG	1	4	B.1.1.33	0.000421
ORF7b	33	E33del	GAA	---	4	4	B.1.1.519	0.000159
ORF7b	33	E33E	gaA	gaG	4	4	B.1.1.7	0.000004
ORF7b	33	E33G	gAa	gGa	4	4	B.1.177.60	0.000874
ORF7b	33	E33X	Gaa	Taa	4	4	B.1.221	0.000284
ORF7b	33	E33X	Gaa	Taa	4	4	B.1.617.1	0.000516
ORF7b	33	E33E	gaA	gaG	4	4	B.1.617.2	0.000015
ORF7b	33	E33K	Gaa	Aaa	4	4	B.1.634	0.013699
ORF7b	33	E33Y	GaA	TaT	2	3	All	0
ORF7b	33	E33L	GAA	CTT	1	3	All	0
ORF7b	33	E33L	GAa	CTa	1	3	All	0
ORF7b	33	E33Y	GaA	TaC	1	3	All	0
ORF7b	33	E33L	GAA	CTG	1	3	All	0
ORF7b	33	E33del	GAA	---	3	3	AY.118	0.000188
ORF7b	33	E33V	gAa	gTa	3	3	AY.23	0.000209
ORF7b	33	E33del	GAA	---	3	3	AY.25	0.000018
ORF7b	33	E33del	GAA	---	3	3	AY.39	0.000074
ORF7b	33	E33V	gAa	gTa	3	3	AY.39	0.000074
ORF7b	33	E33X	Gaa	Taa	3	3	AY.42	0.000121
ORF7b	33	E33del	GAA	---	3	3	AY.47	0.000093
ORF7b	33	E33X	Gaa	Taa	3	3	AY.5	0.000062
ORF7b	33	E33X	Gaa	Taa	3	3	AY.5.3	0.001012
ORF7b	33	E33V	gAa	gTa	3	3	AY.59	0.001589
ORF7b	33	E33X	Gaa	Taa	3	3	AY.6	0.000123
ORF7b	33	E33V	gAa	gTa	3	3	AY.86	0.00249
ORF7b	33	E33V	gAa	gTa	3	3	AY.87	0.002498
ORF7b	33	E33X	Gaa	Taa	3	3	AY.9.2	0.00011
ORF7b	33	E33del	GAA	---	3	3	B.1	0.000027
ORF7b	33	E33X	Gaa	Taa	3	3	B.1.1.362	0.016854
ORF7b	33	E33Q	Gaa	Caa	3	3	B.1.1.7	0.000003
ORF7b	33	E33G	gAa	gGa	3	3	B.1.2	0.000026
ORF7b	33	E33V	gAa	gTa	3	3	B.1.258.17	0.000312
ORF7b	33	E33X	Gaa	Taa	3	3	B.1.36.8	0.003
ORF7b	33	E33X	Gaa	Taa	3	3	B.1.575	0.00091
ORF7b	33	E33G	gAa	gGa	3	3	B.1.595	0.000783
ORF7b	33	E33del	GAA	---	3	3	B.1.617.2	0.000011
ORF7b	33	E33G	gAa	gGa	3	3	B.1.637	0.000219
ORF7b	33	E33del	GAA	---	3	3	P.1.15	0.000697
ORF7b	33	E33del	GAA	---	2	2	A.2.2	0.003378
ORF7b	33	E33del	GAA	---	2	2	AD.2	0.000438
ORF7b	33	E33X	Gaa	Taa	2	2	AY.102	0.000053
ORF7b	33	E33del1	gaA	ga-	2	2	AY.103	0.000012
ORF7b	33	E33V	gAa	gTa	2	2	AY.103	0.000012
ORF7b	33	E33V	gAa	gTa	2	2	AY.113	0.000285
ORF7b	33	E33E	gaA	gaG	2	2	AY.121	0.000271
ORF7b	33	E33V	gAa	gTa	2	2	AY.16.1	0.00094
ORF7b	33	E33V	gAa	gTa	2	2	AY.3	0.00002
ORF7b	33	E33del	GAA	---	2	2	AY.30	0.000791
ORF7b	33	E33X	Gaa	Taa	2	2	AY.34.1	0.00102
ORF7b	33	E33G	gAa	gGa	2	2	AY.4.2	0.000043
ORF7b	33	E33X	Gaa	Taa	2	2	AY.41	0.000588
ORF7b	33	E33V	gAa	gTa	2	2	AY.46.1	0.002053
ORF7b	33	E33I	GAa	ATa	2	2	AY.46.6	0.000144
ORF7b	33	E33V	gAa	gTa	2	2	AY.46.6	0.000144
ORF7b	33	E33K	Gaa	Aaa	2	2	AY.46.6	0.000144
ORF7b	33	E33V	gAa	gTa	2	2	AY.47	0.000062
ORF7b	33	E33del	GAA	---	2	2	AY.48	0.00093
ORF7b	33	E33V	gAa	gTa	2	2	AY.5	0.000041
ORF7b	33	E33X	Gaa	Taa	2	2	AY.54	0.000191
ORF7b	33	E33V	gAa	gTa	2	2	AY.61	0.00021
ORF7b	33	E33V	gAa	gTa	2	2	AY.65	0.001066
ORF7b	33	E33del	GAA	---	2	2	AY.85	0.000854
ORF7b	33	E33X	Gaa	Taa	2	2	AY.87	0.001665
ORF7b	33	E33A	gAa	gCa	2	2	AY.9	0.000135
ORF7b	33	E33G	gAa	gGa	2	2	B.1	0.000018
ORF7b	33	E33V	gAa	gTa	2	2	B.1	0.000018
ORF7b	33	E33D	gaA	gaC	2	2	B.1	0.000018
ORF7b	33	E33A	gAA	gCC	1	2	B.1	0.000009
ORF7b	33	E33A	gAa	gCa	1	2	B.1	0.000009
ORF7b	33	E33del	GAA	---	2	2	B.1.1.216	0.001781
ORF7b	33	E33X	Gaa	Taa	2	2	B.1.1.25	0.001137
ORF7b	33	E33A	gAa	gCa	2	2	B.1.1.28	0.000622
ORF7b	33	E33E	gaA	gaG	2	2	B.1.1.33	0.000842
ORF7b	33	E33K	Gaa	Aaa	2	2	B.1.1.416	0.00181
ORF7b	33	E33X	Gaa	Taa	2	2	B.1.1.46	0.008734
ORF7b	33	E33E	gaA	gaG	2	2	B.1.1.512	0.057143
ORF7b	33	E33V	gAa	gTa	2	2	B.1.1.7	0.000002
ORF7b	33	E33A	gAa	gCa	2	2	B.1.1.7	0.000002
ORF7b	33	E33K	Gaa	Aaa	2	2	B.1.177	0.000026
ORF7b	33	E33del	GAA	---	2	2	B.1.177	0.000026
ORF7b	33	E33del	GAA	---	2	2	B.1.177.12	0.000303
ORF7b	33	E33K	Gaa	Aaa	2	2	B.1.2	0.000018
ORF7b	33	E33A	gAa	gCa	2	2	B.1.2	0.000018
ORF7b	33	E33E	gaA	gaG	2	2	B.1.243	0.000139
ORF7b	33	E33X	Gaa	Taa	2	2	B.1.252	0.013245
ORF7b	33	E33K	Gaa	Aaa	2	2	B.1.258.17	0.000208
ORF7b	33	E33E	gaA	gaG	2	2	B.1.351	0.000059
ORF7b	33	E33del	GAA	---	2	2	B.1.36	0.000292
ORF7b	33	E33del	GAA	---	2	2	B.1.427	0.000101
ORF7b	33	E33del	GAA	---	2	2	B.1.526	0.000047
ORF7b	33	E33del	GAA	---	2	2	B.1.582	0.000981
ORF7b	33	E33L	GAa	CTa	1	2	B.1.617.2	0.000004
ORF7b	33	E33L	GAA	CTG	1	2	B.1.617.2	0.000004
ORF7b	33	E33X	Gaa	Taa	2	2	B.1.627	0.00404
ORF7b	33	E33A	gAa	gCa	2	2	N.6	0.014184
ORF7b	33	E33del	GAA	---	2	2	P.1.1	0.000635
ORF7b	33	E33del	GAA	---	2	2	P.1.14	0.000096
ORF7b	33	E33D	gaA	gaT	2	2	P.1.17	0.000324
ORF7b	33	E33del	GAA	---	1	1	A.1	0.000282
ORF7b	33	E33X	Gaa	Taa	1	1	A.23.1	0.000704
ORF7b	33	E33del	GAA	---	1	1	A.23.1	0.000704
ORF7b	33	E33X	Gaa	Taa	1	1	AE.8	0.000489
ORF7b	33	E33P	GAa	CCa	1	1	All	0
ORF7b	33	E33S	GAA	AGT	1	1	All	0
ORF7b	33	E33H	GaA	CaT	1	1	All	0
ORF7b	33	E33F	GAA	TTT	1	1	All	0
ORF7b	33	E33W	GAA	TGG	1	1	All	0
ORF7b	33	E33C	GAA	TGT	1	1	All	0
ORF7b	33	E33T	GAa	ACa	1	1	All	0
ORF7b	33	E33N	GaA	AaT	1	1	All	0
ORF7b	33	E33X	Gaa	Taa	1	1	AY.100	0.000046
ORF7b	33	E33A	gAa	gCa	1	1	AY.100	0.000046
ORF7b	33	E33A	gAa	gCa	1	1	AY.102	0.000027
ORF7b	33	E33del	GAA	---	1	1	AY.102	0.000027
ORF7b	33	E33K	Gaa	Aaa	1	1	AY.103	0.000006
ORF7b	33	E33E	gaA	gaG	1	1	AY.103	0.000006
ORF7b	33	E33G	gAa	gGa	1	1	AY.105	0.000643
ORF7b	33	E33del	GAA	---	1	1	AY.108	0.001103
ORF7b	33	E33X	Gaa	Taa	1	1	AY.109	0.00074
ORF7b	33	E33V	gAa	gTa	1	1	AY.110	0.000113
ORF7b	33	E33K	Gaa	Aaa	1	1	AY.113	0.000142
ORF7b	33	E33X	Gaa	Taa	1	1	AY.119	0.000035
ORF7b	33	E33G	gAa	gGa	1	1	AY.119	0.000035
ORF7b	33	E33X	Gaa	Taa	1	1	AY.120	0.000037
ORF7b	33	E33X	Gaa	Taa	1	1	AY.120.1	0.000321
ORF7b	33	E33G	gAa	gGa	1	1	AY.121	0.000135
ORF7b	33	E33V	gAa	gTa	1	1	AY.121	0.000135
ORF7b	33	E33V	gAa	gTa	1	1	AY.16	0.00038
ORF7b	33	E33Q	Gaa	Caa	1	1	AY.16.1	0.00047
ORF7b	33	E33del	GAA	---	1	1	AY.20	0.000039
ORF7b	33	E33K	Gaa	Aaa	1	1	AY.20	0.000039
ORF7b	33	E33X	Gaa	Taa	1	1	AY.20	0.000039
ORF7b	33	E33G	gAa	gGa	1	1	AY.23.1	0.000417
ORF7b	33	E33Y	GaA	TaT	1	1	AY.25	0.000006
ORF7b	33	E33H	GaA	CaT	1	1	AY.25	0.000006
ORF7b	33	E33F	GAA	TTT	1	1	AY.25	0.000006
ORF7b	33	E33L	GAA	CTT	1	1	AY.25	0.000006
ORF7b	33	E33A	gAa	gCa	1	1	AY.25	0.000006
ORF7b	33	E33del	GAA	---	1	1	AY.26	0.000028
ORF7b	33	E33X	Gaa	Taa	1	1	AY.27	0.000065
ORF7b	33	E33I	GAa	ATa	1	1	AY.3	0.00001
ORF7b	33	E33K	Gaa	Aaa	1	1	AY.3	0.00001
ORF7b	33	E33Q	GaA	CaG	1	1	AY.3	0.00001
ORF7b	33	E33V	gAa	gTa	1	1	AY.30	0.000396
ORF7b	33	E33V	gAa	gTa	1	1	AY.32	0.000532
ORF7b	33	E33X	Gaa	Taa	1	1	AY.33	0.000067
ORF7b	33	E33G	gAa	gGa	1	1	AY.39	0.000025
ORF7b	33	E33del	GAA	---	1	1	AY.39.1	0.00004
ORF7b	33	E33X	Gaa	Taa	1	1	AY.39.1	0.00004
ORF7b	33	E33D	gaA	gaC	1	1	AY.39.1	0.00004
ORF7b	33	E33del1	gaA	ga-	1	1	AY.4	0.000002
ORF7b	33	E33X	Gaa	Taa	1	1	AY.4.1	0.000737
ORF7b	33	E33del	GAA	---	1	1	AY.4.2	0.000022
ORF7b	33	E33X	Gaa	Taa	1	1	AY.4.2	0.000022
ORF7b	33	E33V	gAa	gTa	1	1	AY.4.2	0.000022
ORF7b	33	E33X	Gaa	Taa	1	1	AY.4.2.1	0.000149
ORF7b	33	E33X	Gaa	Taa	1	1	AY.4.5	0.000107
ORF7b	33	E33A	gAa	gCa	1	1	AY.40	0.000964
ORF7b	33	E33V	gAa	gTa	1	1	AY.42	0.00004
ORF7b	33	E33E	gaA	gaG	1	1	AY.43	0.000004
ORF7b	33	E33N	GaA	AaT	1	1	AY.43	0.000004
ORF7b	33	E33A	gAa	gCa	1	1	AY.44	0.000006
ORF7b	33	E33X	Gaa	Taa	1	1	AY.45	0.000122
ORF7b	33	E33V	gAa	gTa	1	1	AY.45	0.000122
ORF7b	33	E33V	gAa	gTa	1	1	AY.46	0.000104
ORF7b	33	E33Q	Gaa	Caa	1	1	AY.47	0.000031
ORF7b	33	E33E	gaA	gaG	1	1	AY.47	0.000031
ORF7b	33	E33V	gAa	gTa	1	1	AY.49	0.003195
ORF7b	33	E33K	Gaa	Aaa	1	1	AY.5.4	0.000277
ORF7b	33	E33X	Gaa	Taa	1	1	AY.5.4	0.000277
ORF7b	33	E33V	gAa	gTa	1	1	AY.50	0.000799
ORF7b	33	E33V	gAa	gTa	1	1	AY.51	0.000909
ORF7b	33	E33V	gAa	gTa	1	1	AY.55	0.000917
ORF7b	33	E33del	GAA	---	1	1	AY.55	0.000917
ORF7b	33	E33del	GAA	---	1	1	AY.58	0.000907
ORF7b	33	E33del	GAA	---	1	1	AY.6	0.000041
ORF7b	33	E33K	Gaa	Aaa	1	1	AY.6	0.000041
ORF7b	33	E33Q	Gaa	Caa	1	1	AY.61	0.000105
ORF7b	33	E33X	Gaa	Taa	1	1	AY.61	0.000105
ORF7b	33	E33A	gAa	gCa	1	1	AY.62	0.000436
ORF7b	33	E33Y	GaA	TaC	1	1	AY.62	0.000436
ORF7b	33	E33del	GAA	---	1	1	AY.67	0.000464
ORF7b	33	E33X	Gaa	Taa	1	1	AY.67	0.000464
ORF7b	33	E33V	gAa	gTa	1	1	AY.7	0.000196
ORF7b	33	E33V	gAa	gTa	1	1	AY.72	0.001361
ORF7b	33	E33X	Gaa	Taa	1	1	AY.75	0.000056
ORF7b	33	E33del	GAA	---	1	1	AY.75	0.000056
ORF7b	33	E33X	Gaa	Taa	1	1	AY.77	0.001127
ORF7b	33	E33D	gaA	gaC	1	1	AY.78	0.001541
ORF7b	33	E33del	GAA	---	1	1	AY.84	0.000437
ORF7b	33	E33V	gAa	gTa	1	1	AY.9.2	0.000037
ORF7b	33	E33I	GAa	ATa	1	1	AY.9.2	0.000037
ORF7b	33	E33X	Gaa	Taa	1	1	AY.95	0.000761
ORF7b	33	E33G	gAa	gGa	1	1	AY.98	0.000079
ORF7b	33	E33K	Gaa	Aaa	1	1	AY.98	0.000079
ORF7b	33	E33del1	gAa	g-a	1	1	AY.98	0.000079
ORF7b	33	E33del	GAA	---	1	1	AY.99	0.001049
ORF7b	33	E33X	Gaa	Taa	1	1	AZ.1	0.000867
ORF7b	33	E33Q	Gaa	Caa	1	1	B	0.000128
ORF7b	33	E33V	gAa	gTa	1	1	B	0.000128
ORF7b	33	E33del1	Gaa	-aa	1	1	B.1	0.000009
ORF7b	33	E33Q	Gaa	Caa	1	1	B.1	0.000009
ORF7b	33	E33A	gAa	gCa	1	1	B.1.1	0.000018
ORF7b	33	E33K	Gaa	Aaa	1	1	B.1.1.1	0.000327
ORF7b	33	E33V	gAa	gTa	1	1	B.1.1.1	0.000327
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.10	0.001115
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.216	0.00089
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.284	0.000107
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.316	0.000925
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.318	0.000302
ORF7b	33	E33C	GAA	TGT	1	1	B.1.1.33	0.000421
ORF7b	33	E33Y	GaA	TaT	1	1	B.1.1.33	0.000421
ORF7b	33	E33W	GAA	TGG	1	1	B.1.1.33	0.000421
ORF7b	33	E33D	gaA	gaT	1	1	B.1.1.33	0.000421
ORF7b	33	E33E	gaA	gaG	1	1	B.1.1.416	0.000905
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.434	0.000349
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.435	0.034483
ORF7b	33	E33del	GAA	---	1	1	B.1.1.44	0.00241
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.448	0.002033
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.1.519	0.00004
ORF7b	33	E33Q	Gaa	Caa	1	1	B.1.1.519	0.00004
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.113	0.015625
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.139	0.000733
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.160.16	0.000929
ORF7b	33	E33E	gaA	gaG	1	1	B.1.177	0.000013
ORF7b	33	E33G	gAa	gGa	1	1	B.1.177	0.000013
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.177.15	0.000631
ORF7b	33	E33del	GAA	---	1	1	B.1.177.15	0.000631
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.177.19	0.001431
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.177.24	0.001295
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.177.52	0.001757
ORF7b	33	E33A	gAa	gCa	1	1	B.1.177.6	0.000977
ORF7b	33	E33K	Gaa	Aaa	1	1	B.1.177.63	0.002703
ORF7b	33	E33K	Gaa	Aaa	1	1	B.1.177.81	0.000189
ORF7b	33	E33del	GAA	---	1	1	B.1.177.83	0.001481
ORF7b	33	E33del	GAA	---	1	1	B.1.195	0.005025
ORF7b	33	E33V	gAa	gTa	1	1	B.1.2	0.000009
ORF7b	33	E33S	GAA	AGT	1	1	B.1.214.2	0.0006
ORF7b	33	E33del	GAA	---	1	1	B.1.234	0.000132
ORF7b	33	E33K	Gaa	Aaa	1	1	B.1.243	0.00007
ORF7b	33	E33D	gaA	gaT	1	1	B.1.258	0.000067
ORF7b	33	E33K	Gaa	Aaa	1	1	B.1.258	0.000067
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.258.11	0.000396
ORF7b	33	E33T	GAa	ACa	1	1	B.1.258.14	0.00098
ORF7b	33	E33Q	Gaa	Caa	1	1	B.1.258.14	0.00098
ORF7b	33	E33del	GAA	---	1	1	B.1.258.14	0.00098
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.260	0.003344
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.313	0.006579
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.36.22	0.001208
ORF7b	33	E33K	Gaa	Aaa	1	1	B.1.36.29	0.000517
ORF7b	33	E33del	GAA	---	1	1	B.1.369	0.000285
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.390	0.010638
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.391	0.001127
ORF7b	33	E33del	GAA	---	1	1	B.1.400	0.000429
ORF7b	33	E33G	gAa	gGa	1	1	B.1.429	0.000024
ORF7b	33	E33del	GAA	---	1	1	B.1.429	0.000024
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.438.1	0.000107
ORF7b	33	E33G	gAa	gGa	1	1	B.1.459	0.004082
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.466.2	0.000391
ORF7b	33	E33del	GAA	---	1	1	B.1.468	0.005714
ORF7b	33	E33G	gAa	gGa	1	1	B.1.471	0.002732
ORF7b	33	E33del	GAA	---	1	1	B.1.499	0.00105
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.518	0.011765
ORF7b	33	E33P	GAa	CCa	1	1	B.1.544	0.006024
ORF7b	33	E33A	gAa	gCa	1	1	B.1.594	0.03125
ORF7b	33	E33Q	Gaa	Caa	1	1	B.1.605	0.005952
ORF7b	33	E33A	gAa	gCa	1	1	B.1.617.2	0.000004
ORF7b	33	E33X	Gaa	Taa	1	1	B.1.620	0.000946
ORF7b	33	E33G	gAa	gGa	1	1	B.1.621	0.000089
ORF7b	33	E33del	GAA	---	1	1	B.1.630	0.005236
ORF7b	33	E33K	Gaa	Aaa	1	1	B.1.91	0.002075
ORF7b	33	E33X	Gaa	Taa	1	1	B.6.6	0.000889
ORF7b	33	E33K	Gaa	Aaa	1	1	B.6.6	0.000889
ORF7b	33	E33X	Gaa	Taa	1	1	C.37	0.000116
ORF7b	33	E33del	GAA	---	1	1	C.37	0.000116
ORF7b	33	E33K	Gaa	Aaa	1	1	D.2	0.000075
ORF7b	33	E33X	Gaa	Taa	1	1	D.2	0.000075
ORF7b	33	E33Q	Gaa	Caa	1	1	D.2	0.000075
ORF7b	33	E33A	gAa	gCa	1	1	N.1	0.016949
ORF7b	33	E33K	Gaa	Aaa	1	1	P.1	0.000016
ORF7b	33	E33del	GAA	---	1	1	P.1	0.000016
ORF7b	33	E33G	gAa	gGa	1	1	P.1	0.000016
ORF7b	33	E33E	gaA	gaG	1	1	P.1	0.000016
ORF7b	33	E33X	Gaa	Taa	1	1	P.1.12	0.000484
ORF7b	33	E33G	gAa	gGa	1	1	P.1.7	0.000319
ORF7b	33	E33G	gAa	gGa	1	1	P.3	0.001595
ORF7b	33	E33X	Gaa	Taa	1	1	Q.1	0.000126
ORF7b	33	E33X	Gaa	Taa	1	1	Q.3	0.000145
ORF7b	33	E33Q	Gaa	Caa	1	1	Q.3	0.000145
ORF7b	33	E33X	Gaa	Taa	1	1	Q.8	0.000165
ORF7b	33	E33X	Gaa	Taa	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.