CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 31 | S31L | nonsyn | tCa | tTa | 7177 | 7175 | 0.999721 | 27846-27848 | |
ORF7b | 31 | S31L | nonsyn | TCA | CTG | 7177 | 2 | 0.000278668 | 27846-27848 | |
ORF7b | 31 | S31P | nonsyn | Tca | Cca | 328 | 328 | 1 | 27846-27848 | |
ORF7b | 31 | S31del | del | TCA | --- | 305 | 305 | 1 | 27846-27848 | |
ORF7b | 31 | S31X | nonsyn | tCa | tGa | 226 | 150 | 0.663717 | 27846-27848 | |
ORF7b | 31 | S31X | nonsyn | tCa | tAa | 226 | 75 | 0.331858 | 27846-27848 | |
ORF7b | 31 | S31X | nonsyn | tCA | tAG | 226 | 1 | 0.00442478 | 27846-27848 | |
ORF7b | 31 | S31S | syn | tcA | tcG | 187 | 138 | 0.737968 | 27846-27848 | |
ORF7b | 31 | S31S | syn | tcA | tcC | 187 | 29 | 0.15508 | 27846-27848 | |
ORF7b | 31 | S31S | syn | tcA | tcT | 187 | 20 | 0.106952 | 27846-27848 | |
ORF7b | 31 | S31A | nonsyn | Tca | Gca | 104 | 104 | 1 | 27846-27848 | |
ORF7b | 31 | S31del1 | del | tcA | tc- | 30 | 25 | 0.833333 | 27846-27848 | |
ORF7b | 31 | S31del1 | del | tCa | t-a | 30 | 3 | 0.1 | 27846-27848 | |
ORF7b | 31 | S31del1 | del | Tca | -ca | 30 | 2 | 0.0666667 | 27846-27848 | |
ORF7b | 31 | S31T | nonsyn | Tca | Aca | 22 | 21 | 0.954545 | 27846-27848 | |
ORF7b | 31 | S31T | nonsyn | TcA | AcG | 22 | 1 | 0.0454545 | 27846-27848 | |
ORF7b | 31 | S31Q | nonsyn | TCa | CAa | 7 | 7 | 1 | 27846-27848 | |
ORF7b | 31 | S31del2 | del | tCA | t-- | 7 | 5 | 0.714286 | 27846-27848 | |
ORF7b | 31 | S31del2 | del | TCA | K-- | 7 | 1 | 0.142857 | 27846-27848 | |
ORF7b | 31 | S31del2 | del | TCa | --a | 7 | 1 | 0.142857 | 27846-27848 | |
ORF7b | 31 | S31C | nonsyn | tCA | tGT | 4 | 4 | 1 | 27846-27848 | |
ORF7b | 31 | S31I | nonsyn | TCa | ATa | 2 | 1 | 0.5 | 27846-27848 | |
ORF7b | 31 | S31V | nonsyn | TCA | GTT | 2 | 1 | 0.5 | 27846-27848 | |
ORF7b | 31 | S31V | nonsyn | TCa | GTa | 2 | 1 | 0.5 | 27846-27848 | |
ORF7b | 31 | S31Y | nonsyn | tCA | tAT | 2 | 1 | 0.5 | 27846-27848 | |
ORF7b | 31 | S31Y | nonsyn | tCA | tAC | 2 | 1 | 0.5 | 27846-27848 | |
ORF7b | 31 | S31I | nonsyn | TCA | ATT | 2 | 1 | 0.5 | 27846-27848 | |
ORF7b | 31 | S31K | nonsyn | TCA | AAG | 1 | 1 | 1 | 27846-27848 | |
ORF7b | 31 | S31F | nonsyn | tCA | tTT | 1 | 1 | 1 | 27846-27848 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 31 | S31L | tCa | tTa | 7175 | 7177 | All | 0.001372 |
ORF7b | 31 | S31L | TCA | CTG | 2 | 7177 | All | 0 |
ORF7b | 31 | S31L | tCa | tTa | 2327 | 2327 | B.1.1.7 | 0.002083 |
ORF7b | 31 | S31L | tCa | tTa | 888 | 888 | AY.4 | 0.001382 |
ORF7b | 31 | S31L | tCa | tTa | 709 | 709 | B.1.1.519 | 0.028155 |
ORF7b | 31 | S31P | Tca | Cca | 328 | 328 | All | 0.000063 |
ORF7b | 31 | S31L | tCa | tTa | 311 | 311 | AY.103 | 0.001931 |
ORF7b | 31 | S31del | TCA | --- | 305 | 305 | All | 0.000058 |
ORF7b | 31 | S31X | tCa | tGa | 150 | 226 | All | 0.000029 |
ORF7b | 31 | S31X | tCa | tAa | 75 | 226 | All | 0.000014 |
ORF7b | 31 | S31X | tCA | tAG | 1 | 226 | All | 0 |
ORF7b | 31 | S31L | tCa | tTa | 189 | 189 | B.1.427 | 0.009544 |
ORF7b | 31 | S31S | tcA | tcG | 138 | 187 | All | 0.000026 |
ORF7b | 31 | S31S | tcA | tcC | 29 | 187 | All | 0.000006 |
ORF7b | 31 | S31S | tcA | tcT | 20 | 187 | All | 0.000004 |
ORF7b | 31 | S31L | tCa | tTa | 179 | 179 | AY.4.2 | 0.003882 |
ORF7b | 31 | S31L | tCa | tTa | 142 | 142 | B.1.243 | 0.009881 |
ORF7b | 31 | S31L | tCa | tTa | 131 | 131 | P.1 | 0.002064 |
ORF7b | 31 | S31X | tCa | tGa | 121 | 124 | AY.4 | 0.000188 |
ORF7b | 31 | S31X | tCa | tAa | 3 | 124 | AY.4 | 0.000005 |
ORF7b | 31 | S31P | Tca | Cca | 110 | 110 | B.1.1.7 | 0.000098 |
ORF7b | 31 | S31A | Tca | Gca | 104 | 104 | All | 0.00002 |
ORF7b | 31 | S31L | tCa | tTa | 101 | 101 | AY.44 | 0.000615 |
ORF7b | 31 | S31L | tCa | tTa | 98 | 98 | B.1.2 | 0.000863 |
ORF7b | 31 | S31L | tCa | tTa | 95 | 95 | AY.33 | 0.006344 |
ORF7b | 31 | S31L | tCa | tTa | 95 | 95 | B.1.1 | 0.001723 |
ORF7b | 31 | S31L | tCa | tTa | 94 | 94 | AY.3 | 0.000935 |
ORF7b | 31 | S31L | tCa | tTa | 90 | 91 | B.1.617.2 | 0.000339 |
ORF7b | 31 | S31L | TCA | CTG | 1 | 91 | B.1.617.2 | 0.000004 |
ORF7b | 31 | S31L | tCa | tTa | 85 | 85 | B.1.36 | 0.012402 |
ORF7b | 31 | S31L | tCa | tTa | 83 | 83 | B.1.408 | 0.306273 |
ORF7b | 31 | S31L | tCa | tTa | 80 | 80 | B.1 | 0.000733 |
ORF7b | 31 | S31L | tCa | tTa | 78 | 78 | B.1.360 | 0.987342 |
ORF7b | 31 | S31L | tCa | tTa | 66 | 66 | B.1.36.35 | 0.171875 |
ORF7b | 31 | S31L | tCa | tTa | 64 | 64 | B.1.160 | 0.001996 |
ORF7b | 31 | S31del | TCA | --- | 62 | 62 | AY.4 | 0.000096 |
ORF7b | 31 | S31P | Tca | Cca | 55 | 55 | AY.9.2 | 0.00202 |
ORF7b | 31 | S31L | tCa | tTa | 55 | 55 | B.1.232 | 0.029554 |
ORF7b | 31 | S31L | tCa | tTa | 52 | 52 | AY.27 | 0.003365 |
ORF7b | 31 | S31P | Tca | Cca | 52 | 52 | B.1.526 | 0.001222 |
ORF7b | 31 | S31L | tCa | tTa | 50 | 50 | AY.43 | 0.000222 |
ORF7b | 31 | S31L | tCa | tTa | 50 | 50 | Q.7 | 0.055556 |
ORF7b | 31 | S31A | Tca | Gca | 49 | 49 | B.1.1.7 | 0.000044 |
ORF7b | 31 | S31del | TCA | --- | 49 | 49 | B.1.243 | 0.00341 |
ORF7b | 31 | S31X | tCa | tAa | 48 | 48 | AY.25 | 0.000289 |
ORF7b | 31 | S31S | tcA | tcG | 39 | 47 | B.1.1.7 | 0.000035 |
ORF7b | 31 | S31S | tcA | tcC | 7 | 47 | B.1.1.7 | 0.000006 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 47 | B.1.1.7 | 0.000001 |
ORF7b | 31 | S31L | tCa | tTa | 46 | 46 | B.1.429 | 0.001082 |
ORF7b | 31 | S31L | tCa | tTa | 41 | 41 | AU.1 | 0.051899 |
ORF7b | 31 | S31del | TCA | --- | 37 | 37 | AY.29 | 0.000584 |
ORF7b | 31 | S31L | tCa | tTa | 37 | 37 | B.1.177 | 0.000487 |
ORF7b | 31 | S31L | tCa | tTa | 36 | 36 | AY.39 | 0.00089 |
ORF7b | 31 | S31del | TCA | --- | 31 | 31 | B.1.1.7 | 0.000028 |
ORF7b | 31 | S31del1 | tcA | tc- | 25 | 30 | All | 0.000005 |
ORF7b | 31 | S31del1 | tCa | t-a | 3 | 30 | All | 0.000001 |
ORF7b | 31 | S31del1 | Tca | -ca | 2 | 30 | All | 0 |
ORF7b | 31 | S31L | tCa | tTa | 29 | 29 | AY.102 | 0.000769 |
ORF7b | 31 | S31L | tCa | tTa | 27 | 27 | AY.26 | 0.000764 |
ORF7b | 31 | S31L | tCa | tTa | 27 | 27 | B.1.177.71 | 0.272727 |
ORF7b | 31 | S31L | tCa | tTa | 26 | 26 | B.1.147 | 0.019652 |
ORF7b | 31 | S31L | tCa | tTa | 24 | 24 | B.1.351 | 0.000713 |
ORF7b | 31 | S31L | tCa | tTa | 23 | 23 | AY.25 | 0.000138 |
ORF7b | 31 | S31L | tCa | tTa | 23 | 23 | AY.47 | 0.000715 |
ORF7b | 31 | S31L | tCa | tTa | 23 | 23 | B.1.177.7 | 0.003792 |
ORF7b | 31 | S31T | Tca | Aca | 21 | 22 | All | 0.000004 |
ORF7b | 31 | S31T | TcA | AcG | 1 | 22 | All | 0 |
ORF7b | 31 | S31L | tCa | tTa | 21 | 21 | Q.8 | 0.003463 |
ORF7b | 31 | S31L | tCa | tTa | 20 | 20 | B.1.526 | 0.00047 |
ORF7b | 31 | S31L | tCa | tTa | 19 | 19 | Q.2 | 0.011656 |
ORF7b | 31 | S31L | tCa | tTa | 17 | 17 | AY.5 | 0.000351 |
ORF7b | 31 | S31del1 | tcA | tc- | 17 | 17 | B | 0.002173 |
ORF7b | 31 | S31L | tCa | tTa | 17 | 17 | B.1.1.216 | 0.015138 |
ORF7b | 31 | S31L | tCa | tTa | 17 | 17 | B.1.139 | 0.012463 |
ORF7b | 31 | S31L | tCa | tTa | 17 | 17 | B.1.596 | 0.001481 |
ORF7b | 31 | S31S | tcA | tcG | 15 | 17 | B.1.617.2 | 0.000056 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 17 | B.1.617.2 | 0.000004 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 17 | B.1.617.2 | 0.000004 |
ORF7b | 31 | S31L | tCa | tTa | 15 | 15 | B.1.637 | 0.001096 |
ORF7b | 31 | S31P | Tca | Cca | 14 | 14 | AY.25 | 0.000084 |
ORF7b | 31 | S31L | tCa | tTa | 14 | 14 | B.1.239 | 0.017094 |
ORF7b | 31 | S31L | tCa | tTa | 13 | 13 | Q.1 | 0.001642 |
ORF7b | 31 | S31A | Tca | Gca | 12 | 12 | AY.103 | 0.000075 |
ORF7b | 31 | S31L | tCa | tTa | 12 | 12 | AY.42 | 0.000483 |
ORF7b | 31 | S31P | Tca | Cca | 12 | 12 | AY.93 | 0.003277 |
ORF7b | 31 | S31P | Tca | Cca | 12 | 12 | B.1.2 | 0.000106 |
ORF7b | 31 | S31L | tCa | tTa | 11 | 11 | AY.120 | 0.000409 |
ORF7b | 31 | S31L | tCa | tTa | 11 | 11 | AY.29 | 0.000174 |
ORF7b | 31 | S31L | tCa | tTa | 11 | 11 | B.1.177.52 | 0.019332 |
ORF7b | 31 | S31L | tCa | tTa | 10 | 10 | AY.119 | 0.000353 |
ORF7b | 31 | S31L | tCa | tTa | 10 | 10 | AY.5.4 | 0.002767 |
ORF7b | 31 | S31L | tCa | tTa | 10 | 10 | B.1.258 | 0.000665 |
ORF7b | 31 | S31L | tCa | tTa | 10 | 10 | P.1.17 | 0.001618 |
ORF7b | 31 | S31L | tCa | tTa | 9 | 9 | AY.100 | 0.000414 |
ORF7b | 31 | S31del | TCA | --- | 9 | 9 | AY.119 | 0.000318 |
ORF7b | 31 | S31L | tCa | tTa | 9 | 9 | AY.29.1 | 0.001985 |
ORF7b | 31 | S31S | tcA | tcG | 7 | 9 | AY.4 | 0.000011 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 9 | AY.4 | 0.000002 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 9 | AY.4 | 0.000002 |
ORF7b | 31 | S31S | tcA | tcG | 5 | 9 | AY.43 | 0.000022 |
ORF7b | 31 | S31S | tcA | tcC | 3 | 9 | AY.43 | 0.000013 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 9 | AY.43 | 0.000004 |
ORF7b | 31 | S31S | tcA | tcG | 9 | 9 | AY.44 | 0.000055 |
ORF7b | 31 | S31P | Tca | Cca | 9 | 9 | AY.86 | 0.007469 |
ORF7b | 31 | S31X | tCa | tGa | 7 | 9 | B.1.1.7 | 0.000006 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 9 | B.1.1.7 | 0.000002 |
ORF7b | 31 | S31L | tCa | tTa | 9 | 9 | B.1.240 | 0.00194 |
ORF7b | 31 | S31L | tCa | tTa | 9 | 9 | B.6 | 0.008189 |
ORF7b | 31 | S31del | TCA | --- | 8 | 8 | AY.44 | 0.000049 |
ORF7b | 31 | S31L | tCa | tTa | 8 | 8 | AY.75 | 0.000448 |
ORF7b | 31 | S31del | TCA | --- | 8 | 8 | B.1.1.265 | 0.025237 |
ORF7b | 31 | S31L | tCa | tTa | 8 | 8 | B.1.1.317 | 0.003294 |
ORF7b | 31 | S31L | tCa | tTa | 8 | 8 | B.1.1.63 | 0.003086 |
ORF7b | 31 | S31L | tCa | tTa | 8 | 8 | B.1.36.29 | 0.004139 |
ORF7b | 31 | S31Q | TCa | CAa | 7 | 7 | All | 0.000001 |
ORF7b | 31 | S31del2 | tCA | t-- | 5 | 7 | All | 0.000001 |
ORF7b | 31 | S31del2 | TCa | --a | 1 | 7 | All | 0 |
ORF7b | 31 | S31del2 | TCA | K-- | 1 | 7 | All | 0 |
ORF7b | 31 | S31del | TCA | --- | 7 | 7 | AY.103 | 0.000043 |
ORF7b | 31 | S31P | Tca | Cca | 7 | 7 | AY.103 | 0.000043 |
ORF7b | 31 | S31L | tCa | tTa | 7 | 7 | AY.109 | 0.005178 |
ORF7b | 31 | S31L | tCa | tTa | 7 | 7 | AY.20 | 0.000272 |
ORF7b | 31 | S31X | tCa | tGa | 6 | 7 | AY.39 | 0.000148 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 7 | AY.39 | 0.000025 |
ORF7b | 31 | S31L | tCa | tTa | 7 | 7 | AY.46 | 0.000729 |
ORF7b | 31 | S31S | tcA | tcG | 7 | 7 | AY.8 | 0.004242 |
ORF7b | 31 | S31P | Tca | Cca | 7 | 7 | B.1.1.519 | 0.000278 |
ORF7b | 31 | S31L | tCa | tTa | 7 | 7 | B.1.177.21 | 0.000535 |
ORF7b | 31 | S31L | tCa | tTa | 7 | 7 | B.1.621 | 0.00062 |
ORF7b | 31 | S31del | TCA | --- | 6 | 6 | 0.333333 | |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | AU.3 | 0.012658 |
ORF7b | 31 | S31S | tcA | tcG | 5 | 6 | AY.103 | 0.000031 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 6 | AY.103 | 0.000006 |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | AY.118 | 0.000376 |
ORF7b | 31 | S31S | tcA | tcG | 5 | 6 | AY.25 | 0.00003 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 6 | AY.25 | 0.000006 |
ORF7b | 31 | S31S | tcA | tcG | 6 | 6 | AY.26 | 0.00017 |
ORF7b | 31 | S31del | TCA | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | AY.35 | 0.001398 |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | AY.46.4 | 0.000987 |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | AY.9 | 0.000406 |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | B.1.234 | 0.000792 |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | B.1.561 | 0.002382 |
ORF7b | 31 | S31L | tCa | tTa | 6 | 6 | P.2 | 0.00112 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | AY.16 | 0.001898 |
ORF7b | 31 | S31A | Tca | Gca | 5 | 5 | AY.4 | 0.000008 |
ORF7b | 31 | S31P | Tca | Cca | 5 | 5 | AY.44 | 0.00003 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | AY.6 | 0.000206 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | AY.61 | 0.000524 |
ORF7b | 31 | S31del | TCA | --- | 5 | 5 | AY.75 | 0.00028 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | AY.98.1 | 0.000242 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | B.1.1.25 | 0.002843 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | B.1.1.306 | 0.002192 |
ORF7b | 31 | S31del | TCA | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | B.1.36.25 | 0.011038 |
ORF7b | 31 | S31X | tCa | tGa | 3 | 5 | B.1.617.2 | 0.000011 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 5 | B.1.617.2 | 0.000008 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | B.4.7 | 0.050505 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | C.37 | 0.00058 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | C.38 | 0.040323 |
ORF7b | 31 | S31L | tCa | tTa | 5 | 5 | P.1.14 | 0.000239 |
ORF7b | 31 | S31S | tcA | tcC | 5 | 5 | R.1 | 0.00045 |
ORF7b | 31 | S31C | tCA | tGT | 4 | 4 | All | 0.000001 |
ORF7b | 31 | S31P | Tca | Cca | 4 | 4 | AY.4 | 0.000006 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | AY.46.6 | 0.000289 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | AY.54 | 0.000381 |
ORF7b | 31 | S31A | Tca | Gca | 4 | 4 | AY.70 | 0.000834 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | AY.9.1 | 0.000335 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | AY.9.2 | 0.000147 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | AY.98 | 0.000316 |
ORF7b | 31 | S31del | TCA | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.1.1 | 0.001307 |
ORF7b | 31 | S31del | TCA | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.1.218 | 0.030769 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.1.311 | 0.001433 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.1.348 | 0.003185 |
ORF7b | 31 | S31del1 | tcA | tc- | 3 | 4 | B.1.1.7 | 0.000003 |
ORF7b | 31 | S31del1 | Tca | -ca | 1 | 4 | B.1.1.7 | 0.000001 |
ORF7b | 31 | S31A | Tca | Gca | 4 | 4 | B.1.2 | 0.000035 |
ORF7b | 31 | S31P | Tca | Cca | 4 | 4 | B.1.234 | 0.000528 |
ORF7b | 31 | S31P | Tca | Cca | 4 | 4 | B.1.36.1 | 0.004561 |
ORF7b | 31 | S31T | Tca | Aca | 4 | 4 | B.1.564 | 0.001704 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.595 | 0.001044 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.619 | 0.003484 |
ORF7b | 31 | S31L | tCa | tTa | 4 | 4 | B.1.628 | 0.001409 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | AY.110 | 0.000338 |
ORF7b | 31 | S31del | TCA | --- | 3 | 3 | AY.118 | 0.000188 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | AY.16.1 | 0.00141 |
ORF7b | 31 | S31del | TCA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | AY.36 | 0.000445 |
ORF7b | 31 | S31del | TCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 3 | AY.44 | 0.000012 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 3 | AY.44 | 0.000006 |
ORF7b | 31 | S31S | tcA | tcG | 3 | 3 | AY.5 | 0.000062 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | AY.5.2 | 0.007389 |
ORF7b | 31 | S31S | tcA | tcG | 3 | 3 | AY.54 | 0.000286 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | AY.85 | 0.001282 |
ORF7b | 31 | S31del | TCA | --- | 3 | 3 | B.1 | 0.000027 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.1.284 | 0.000322 |
ORF7b | 31 | S31A | Tca | Gca | 3 | 3 | B.1.1.317 | 0.001235 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.1.33 | 0.001263 |
ORF7b | 31 | S31S | tcA | tcG | 3 | 3 | B.1.126 | 0.003827 |
ORF7b | 31 | S31S | tcA | tcG | 3 | 3 | B.1.177 | 0.00004 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.177.18 | 0.00348 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.177.33 | 0.004934 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.177.58 | 0.003995 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.177.60 | 0.000655 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.177.73 | 0.001699 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF7b | 31 | S31del1 | tcA | tc- | 3 | 3 | B.1.2 | 0.000026 |
ORF7b | 31 | S31S | tcA | tcT | 2 | 3 | B.1.2 | 0.000018 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 3 | B.1.2 | 0.000009 |
ORF7b | 31 | S31S | tcA | tcC | 3 | 3 | B.1.218 | 0.015464 |
ORF7b | 31 | S31A | Tca | Gca | 3 | 3 | B.1.351 | 0.000089 |
ORF7b | 31 | S31del | TCA | --- | 3 | 3 | B.1.36 | 0.000438 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.36.18 | 0.001261 |
ORF7b | 31 | S31X | tCa | tGa | 3 | 3 | B.1.526 | 0.000071 |
ORF7b | 31 | S31A | Tca | Gca | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | B.1.9.5 | 0.017045 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | N.5 | 0.0053 |
ORF7b | 31 | S31T | Tca | Aca | 3 | 3 | P.1 | 0.000047 |
ORF7b | 31 | S31del | TCA | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF7b | 31 | S31S | tcA | tcC | 3 | 3 | Q.1 | 0.000379 |
ORF7b | 31 | S31P | Tca | Cca | 3 | 3 | Q.3 | 0.000435 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | Q.3 | 0.000435 |
ORF7b | 31 | S31L | tCa | tTa | 3 | 3 | Z.1 | 0.008671 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | A.2.5 | 0.000998 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | AD.2 | 0.000438 |
ORF7b | 31 | S31V | TCA | GTT | 1 | 2 | All | 0 |
ORF7b | 31 | S31Y | tCA | tAC | 1 | 2 | All | 0 |
ORF7b | 31 | S31V | TCa | GTa | 1 | 2 | All | 0 |
ORF7b | 31 | S31Y | tCA | tAT | 1 | 2 | All | 0 |
ORF7b | 31 | S31I | TCa | ATa | 1 | 2 | All | 0 |
ORF7b | 31 | S31I | TCA | ATT | 1 | 2 | All | 0 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.113 | 0.000285 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.12 | 0.000632 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.120.1 | 0.000642 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.14 | 0.000176 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.23 | 0.000139 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.24 | 0.000862 |
ORF7b | 31 | S31T | Tca | Aca | 2 | 2 | AY.25 | 0.000012 |
ORF7b | 31 | S31A | Tca | Gca | 2 | 2 | AY.29 | 0.000032 |
ORF7b | 31 | S31del1 | tCa | t-a | 2 | 2 | AY.3 | 0.00002 |
ORF7b | 31 | S31V | TCA | GTT | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31V | TCa | GTa | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31I | TCA | ATT | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31X | tCA | tAG | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31I | TCa | ATa | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | AY.30 | 0.000791 |
ORF7b | 31 | S31A | Tca | Gca | 2 | 2 | AY.33 | 0.000134 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.34 | 0.000194 |
ORF7b | 31 | S31S | tcA | tcG | 2 | 2 | AY.39 | 0.000049 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | AY.39 | 0.000049 |
ORF7b | 31 | S31X | tCa | tGa | 2 | 2 | AY.39.1 | 0.000079 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF7b | 31 | S31A | Tca | Gca | 2 | 2 | AY.43 | 0.000009 |
ORF7b | 31 | S31Y | tCA | tAT | 1 | 2 | AY.43 | 0.000004 |
ORF7b | 31 | S31Y | tCA | tAC | 1 | 2 | AY.43 | 0.000004 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 2 | AY.46 | 0.000104 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 2 | AY.46 | 0.000104 |
ORF7b | 31 | S31S | tcA | tcT | 2 | 2 | AY.46.6 | 0.000144 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | AY.48 | 0.00093 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.58 | 0.001815 |
ORF7b | 31 | S31S | tcA | tcG | 2 | 2 | AY.61 | 0.00021 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.62 | 0.000871 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.71 | 0.00095 |
ORF7b | 31 | S31S | tcA | tcG | 2 | 2 | AY.74 | 0.000231 |
ORF7b | 31 | S31S | tcA | tcG | 2 | 2 | AY.75.1 | 0.000361 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | AY.77 | 0.002255 |
ORF7b | 31 | S31C | tCA | tGT | 2 | 2 | AY.85 | 0.000854 |
ORF7b | 31 | S31P | Tca | Cca | 2 | 2 | AY.98.1 | 0.000097 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B | 0.000256 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 2 | B.1 | 0.000018 |
ORF7b | 31 | S31S | tcA | tcG | 2 | 2 | B.1 | 0.000018 |
ORF7b | 31 | S31A | Tca | Gca | 2 | 2 | B.1 | 0.000018 |
ORF7b | 31 | S31T | Tca | Aca | 2 | 2 | B.1 | 0.000018 |
ORF7b | 31 | S31Q | TCa | CAa | 2 | 2 | B.1.1 | 0.000036 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 2 | B.1.1 | 0.000036 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.1.337 | 0.007194 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 2 | B.1.1.519 | 0.00004 |
ORF7b | 31 | S31T | Tca | Aca | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.1.71 | 0.012121 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 2 | B.1.160 | 0.000062 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.160.16 | 0.001859 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | B.1.177.12 | 0.000303 |
ORF7b | 31 | S31S | tcA | tcT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 2 | B.1.177.83 | 0.002963 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.241 | 0.001623 |
ORF7b | 31 | S31X | tCa | tAa | 2 | 2 | B.1.258 | 0.000133 |
ORF7b | 31 | S31S | tcA | tcG | 2 | 2 | B.1.333 | 0.021053 |
ORF7b | 31 | S31P | Tca | Cca | 2 | 2 | B.1.36 | 0.000292 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.36.17 | 0.000988 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.361 | 0.002577 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.362 | 0.003082 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF7b | 31 | S31A | Tca | Gca | 2 | 2 | B.1.525 | 0.000226 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.568 | 0.002222 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.576 | 0.001813 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | B.1.582 | 0.000981 |
ORF7b | 31 | S31A | Tca | Gca | 2 | 2 | B.1.621 | 0.000177 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.1.626 | 0.011429 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | B.31 | 0.007463 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | C.36.3 | 0.001134 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | P.1.12 | 0.000968 |
ORF7b | 31 | S31del | TCA | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF7b | 31 | S31L | tCa | tTa | 2 | 2 | P.1.2 | 0.002312 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | A.2.5 | 0.000499 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | A.27 | 0.001656 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AE.8 | 0.000489 |
ORF7b | 31 | S31F | tCA | tTT | 1 | 1 | All | 0 |
ORF7b | 31 | S31K | TCA | AAG | 1 | 1 | All | 0 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | AY.101 | 0.00049 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | AY.101 | 0.00049 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 31 | S31del2 | TCa | --a | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.106 | 0.000335 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | AY.11 | 0.001339 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.110 | 0.000113 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.114 | 0.000231 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | AY.116 | 0.000287 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | AY.116 | 0.000287 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.117 | 0.000085 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.23.1 | 0.000417 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.29 | 0.000016 |
ORF7b | 31 | S31T | TcA | AcG | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 31 | S31K | TCA | AAG | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 31 | S31F | tCA | tTT | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.30 | 0.000396 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 1 | AY.33 | 0.000067 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 31 | S31C | tCA | tGT | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.39.1 | 0.00004 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | AY.4 | 0.000002 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.40 | 0.000964 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 31 | S31del2 | tCA | t-- | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.45 | 0.000122 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.45 | 0.000122 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | AY.46.4 | 0.000165 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 31 | S31del2 | tCA | t-- | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | AY.54 | 0.000095 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.55 | 0.000917 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.58 | 0.000907 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | AY.58 | 0.000907 |
ORF7b | 31 | S31del1 | tcA | tc- | 1 | 1 | AY.6 | 0.000041 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.65 | 0.000533 |
ORF7b | 31 | S31del2 | TCA | K-- | 1 | 1 | AY.67 | 0.000464 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.68 | 0.000274 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.69 | 0.000187 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | AY.84 | 0.000437 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | AY.85 | 0.000427 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 31 | S31L | TCA | CTG | 1 | 1 | AY.99 | 0.001049 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 1 | AY.99.1 | 0.001553 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF7b | 31 | S31del2 | tCA | t-- | 1 | 1 | B | 0.000128 |
ORF7b | 31 | S31Q | TCa | CAa | 1 | 1 | B.1 | 0.000009 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.119 | 0.034483 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.134 | 0.011364 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.279 | 0.001121 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7b | 31 | S31Q | TCa | CAa | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.289 | 0.002083 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.1.291 | 0.000742 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.302 | 0.002075 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.453 | 0.008475 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.487 | 0.005587 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.52 | 0.012195 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7b | 31 | S31Q | TCa | CAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7b | 31 | S31del2 | tCA | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.1.99 | 0.02381 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | B.1.111 | 0.001175 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.126 | 0.001276 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.128 | 0.000635 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.160.18 | 0.007299 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.166 | 0.008475 |
ORF7b | 31 | S31Q | TCa | CAa | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 31 | S31C | tCA | tGT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.177.23 | 0.003236 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.177.43 | 0.001477 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | B.1.206 | 0.000816 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | B.1.221 | 0.000071 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.229 | 0.009709 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | B.1.258.14 | 0.00098 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.258.14 | 0.00098 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.305 | 0.002151 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.311 | 0.000275 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.349 | 0.000715 |
ORF7b | 31 | S31Q | TCa | CAa | 1 | 1 | B.1.351 | 0.00003 |
ORF7b | 31 | S31del1 | tCa | t-a | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.390 | 0.010638 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.400 | 0.000429 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.400 | 0.000429 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.400.1 | 0.015152 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.404 | 0.001302 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.433 | 0.003195 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.470 | 0.001404 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.471 | 0.002732 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 1 | B.1.497 | 0.000315 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.525 | 0.000113 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 31 | S31del1 | tcA | tc- | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.533 | 0.009615 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.538 | 0.008065 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | B.1.551 | 0.00129 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.551 | 0.00129 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.565 | 0.00081 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.575 | 0.000303 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.588 | 0.00091 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 31 | S31del1 | Tca | -ca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 1 | B.1.627 | 0.00202 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 31 | S31X | tCa | tAa | 1 | 1 | B.1.637 | 0.000073 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | B.1.93 | 0.000934 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | B.3 | 0.000831 |
ORF7b | 31 | S31S | tcA | tcT | 1 | 1 | B.40 | 0.000364 |
ORF7b | 31 | S31del2 | tCA | t-- | 1 | 1 | C.18 | 0.002591 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | C.37 | 0.000116 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | C.37 | 0.000116 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | D.2 | 0.000075 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | L.4 | 0.05 |
ORF7b | 31 | S31X | tCa | tGa | 1 | 1 | P.1 | 0.000016 |
ORF7b | 31 | S31del | TCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | P.1 | 0.000016 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | P.1.1 | 0.000318 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | P.1.15 | 0.000232 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | P.1.16 | 0.000374 |
ORF7b | 31 | S31S | tcA | tcG | 1 | 1 | P.1.17 | 0.000162 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | P.1.4 | 0.000977 |
ORF7b | 31 | S31P | Tca | Cca | 1 | 1 | P.2 | 0.000187 |
ORF7b | 31 | S31S | tcA | tcC | 1 | 1 | P.2 | 0.000187 |
ORF7b | 31 | S31A | Tca | Gca | 1 | 1 | Q.1 | 0.000126 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | R.1 | 0.00009 |
ORF7b | 31 | S31L | tCa | tTa | 1 | 1 | U.3 | 0.003861 |
ORF7b | 31 | S31T | Tca | Aca | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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