CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 3 | E3del | del | GAA | --- | 1178 | 1178 | 1 | 27762-27764 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 3 | E3del | GAA | --- | 1178 | 1178 | All | 0.000225 |
ORF7b | 3 | E3del | GAA | --- | 665 | 665 | B.1.1.7 | 0.000595 |
ORF7b | 3 | E3del | GAA | --- | 141 | 141 | AY.4 | 0.000219 |
ORF7b | 3 | E3del | GAA | --- | 50 | 50 | B.1.2 | 0.00044 |
ORF7b | 3 | E3del | GAA | --- | 31 | 31 | P.1 | 0.000488 |
ORF7b | 3 | E3del | GAA | --- | 20 | 20 | B.1 | 0.000183 |
ORF7b | 3 | E3del | GAA | --- | 18 | 18 | AY.25 | 0.000108 |
ORF7b | 3 | E3del | GAA | --- | 17 | 17 | AY.43 | 0.000075 |
ORF7b | 3 | E3del | GAA | --- | 15 | 15 | B.1.427 | 0.000757 |
ORF7b | 3 | E3del | GAA | --- | 14 | 14 | AY.29 | 0.000221 |
ORF7b | 3 | E3del | GAA | --- | 13 | 13 | B.1.1 | 0.000236 |
ORF7b | 3 | E3del | GAA | --- | 11 | 11 | AY.26 | 0.000311 |
ORF7b | 3 | E3del | GAA | --- | 11 | 11 | B.1.617.2 | 0.000041 |
ORF7b | 3 | E3del | GAA | --- | 10 | 10 | B.1.234 | 0.001319 |
ORF7b | 3 | E3del | GAA | --- | 10 | 10 | Q.8 | 0.001649 |
ORF7b | 3 | E3del | GAA | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF7b | 3 | E3del | GAA | --- | 7 | 7 | AY.103 | 0.000043 |
ORF7b | 3 | E3del | GAA | --- | 6 | 6 | B.1.1.519 | 0.000238 |
ORF7b | 3 | E3del | GAA | --- | 5 | 5 | B.1.1.214 | 0.000277 |
ORF7b | 3 | E3del | GAA | --- | 5 | 5 | B.1.36.29 | 0.002587 |
ORF7b | 3 | E3del | GAA | --- | 4 | 4 | AY.44 | 0.000024 |
ORF7b | 3 | E3del | GAA | --- | 4 | 4 | B.1.1.284 | 0.00043 |
ORF7b | 3 | E3del | GAA | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF7b | 3 | E3del | GAA | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | AY.47 | 0.000093 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | AY.65 | 0.001599 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | B.1.1.232 | 0.005445 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | B.1.1.37 | 0.000579 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | B.1.214 | 0.010989 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | B.1.351 | 0.000089 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7b | 3 | E3del | GAA | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | AY.113 | 0.000285 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | AY.30 | 0.000791 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | AY.39 | 0.000049 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF7b | 3 | E3del | GAA | --- | 2 | 2 | Q.1 | 0.000253 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | A | 0.000387 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | A.2 | 0.000662 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | A.23 | 0.010526 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.118 | 0.000063 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.119 | 0.000035 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B | 0.000128 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.177.42 | 0.000894 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.219 | 0.009434 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | B.6 | 0.00091 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | C.37 | 0.000116 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | N.5 | 0.001767 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7b | 3 | E3del | GAA | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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