CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 3

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b3E3XnonsynGaaTaa197219590.99340827762-27764
ORF7b3E3XnonsynGAaTGa1972120.0060851927762-27764
ORF7b3E3XnonsynGaATaG197210.00050709927762-27764
ORF7b3E3deldelGAA---11781178127762-27764
ORF7b3E3del1delGaa-aa114711350.98953827762-27764
ORF7b3E3del1delGAA-NN114730.0026155227762-27764
ORF7b3E3del1delGAa-Ta114730.0026155227762-27764
ORF7b3E3del1delgAag-a114720.0017436827762-27764
ORF7b3E3del1delGAa-Na114710.0008718427762-27764
ORF7b3E3del1delGaA-aT114710.0008718427762-27764
ORF7b3E3del1delgaAga-114710.0008718427762-27764
ORF7b3E3del1delGaA-aC114710.0008718427762-27764
ORF7b3E3QnonsynGaaCaa437437127762-27764
ORF7b3E3KnonsynGaaAaa331331127762-27764
ORF7b3E3AnonsyngAagCa9898127762-27764
ORF7b3E3GnonsyngAagGa8989127762-27764
ORF7b3E3VnonsyngAagTa67660.98507527762-27764
ORF7b3E3VnonsyngAAgTG6710.014925427762-27764
ORF7b3E3EsyngaAgaG5858127762-27764
ORF7b3E3del2delgAAg--40290.72527762-27764
ORF7b3E3del2delGAa--a40110.27527762-27764
ORF7b3E3DnonsyngaAgaC26230.88461527762-27764
ORF7b3E3DnonsyngaAgaT2630.11538527762-27764
ORF7b3E3LnonsynGAaTTa33127762-27764
ORF7b3E3TnonsynGAaACa22127762-27764
ORF7b3E3RnonsynGAaAGa11127762-27764
ORF7b3E3MnonsynGAAATG11127762-27764
ORF7b3E3InonsynGAAATT11127762-27764

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b3E3XGaaTaa19591972All0.000375
ORF7b3E3XGAaTGa121972All0.000002
ORF7b3E3XGaATaG11972All0
ORF7b3E3delGAA---11781178All0.000225
ORF7b3E3del1Gaa-aa11351147All0.000217
ORF7b3E3del1GAa-Ta31147All0.000001
ORF7b3E3del1GAA-NN31147All0.000001
ORF7b3E3del1gAag-a21147All0
ORF7b3E3del1GAa-Na11147All0
ORF7b3E3del1GaA-aT11147All0
ORF7b3E3del1gaAga-11147All0
ORF7b3E3del1GaA-aC11147All0
ORF7b3E3delGAA---665665B.1.1.70.000595
ORF7b3E3del1Gaa-aa535541B.1.1.70.000479
ORF7b3E3del1GAa-Ta3541B.1.1.70.000003
ORF7b3E3del1GaA-aC1541B.1.1.70.000001
ORF7b3E3del1GAA-NN1541B.1.1.70.000001
ORF7b3E3del1gAag-a1541B.1.1.70.000001
ORF7b3E3QGaaCaa437437All0.000084
ORF7b3E3XGaaTaa428437B.1.1.70.000383
ORF7b3E3XGAaTGa9437B.1.1.70.000008
ORF7b3E3KGaaAaa331331All0.000063
ORF7b3E3XGaaTaa190190B.1.6210.016819
ORF7b3E3XGaaTaa188188B.1.617.20.000708
ORF7b3E3XGaaTaa142142AY.34.10.072412
ORF7b3E3delGAA---141141AY.40.000219
ORF7b3E3XGaaTaa115115AY.40.000179
ORF7b3E3XGaaTaa107107B.1.362.20.504717
ORF7b3E3del1Gaa-aa9999AY.40.000154
ORF7b3E3AgAagCa9898All0.000019
ORF7b3E3QGaaCaa9595B.1.258.170.009877
ORF7b3E3GgAagGa8989All0.000017
ORF7b3E3QGaaCaa8383B.1.1.70.000074
ORF7b3E3KGaaAaa6868B.1.1.70.000061
ORF7b3E3VgAagTa6667All0.000013
ORF7b3E3VgAAgTG167All0
ORF7b3E3XGaaTaa6161B.1.20.000537
ORF7b3E3EgaAgaG5858All0.000011
ORF7b3E3delGAA---5050B.1.20.00044
ORF7b3E3del1Gaa-aa4949AY.1180.00307
ORF7b3E3XGaaTaa4949B.1.3510.001457
ORF7b3E3del1Gaa-aa4646P.10.000725
ORF7b3E3KGaaAaa4444B.1.617.20.000166
ORF7b3E3XGaaTaa4343AY.1020.00114
ORF7b3E3QGaaCaa4242B.1.1600.00131
ORF7b3E3VgAagTa4141B.1.1.70.000037
ORF7b3E3del2gAAg--2940All0.000006
ORF7b3E3del2GAa--a1140All0.000002
ORF7b3E3KGaaAaa4040AY.40.000062
ORF7b3E3del1Gaa-aa3939B.1.617.20.000147
ORF7b3E3XGaaTaa3838AY.430.000168
ORF7b3E3QGaaCaa3535B.1.1.3060.015344
ORF7b3E3del1Gaa-aa3434B.1.20.000299
ORF7b3E3XGaaTaa3434B.1.2430.002366
ORF7b3E3KGaaAaa3333AY.250.000198
ORF7b3E3XGaaTaa3333AY.440.000201
ORF7b3E3del1Gaa-aa3333B.1.1.2840.003544
ORF7b3E3AgAagCa3232B.1.5620.592593
ORF7b3E3XGaaTaa3131B.1.177.510.141553
ORF7b3E3KGaaAaa3131B.1.20.000273
ORF7b3E3delGAA---3131P.10.000488
ORF7b3E3QGaaCaa3030AY.40.000047
ORF7b3E3XGaaTaa3030P.10.000473
ORF7b3E3AgAagCa2727P.1.160.010101
ORF7b3E3DgaAgaC2326All0.000004
ORF7b3E3DgaAgaT326All0.000001
ORF7b3E3XGaaTaa2626AY.4.20.000564
ORF7b3E3GgAagGa2626B.1.1.70.000023
ORF7b3E3del1Gaa-aa2323B.1.1920.212963
ORF7b3E3XGaaTaa2222AY.1030.000137
ORF7b3E3XGaaTaa2121AY.46.60.001516
ORF7b3E3XGaaTaa2121B.1.4290.000494
ORF7b3E3delGAA---2020B.10.000183
ORF7b3E3GgAagGa1919B.1.2210.00135
ORF7b3E3XGaaTaa1919B.1.5960.001656
ORF7b3E3delGAA---1818AY.250.000108
ORF7b3E3DgaAgaC1818P.1.140.00086
ORF7b3E3delGAA---1717AY.430.000075
ORF7b3E3EgaAgaG1717B.10.000156
ORF7b3E3XGaaTaa1616AY.250.000096
ORF7b3E3del1Gaa-aa1515AY.1030.000093
ORF7b3E3XGaaTaa1515B.1.1770.000198
ORF7b3E3QGaaCaa1515B.1.3490.010722
ORF7b3E3delGAA---1515B.1.4270.000757
ORF7b3E3del1Gaa-aa1414AY.250.000084
ORF7b3E3delGAA---1414AY.290.000221
ORF7b3E3delGAA---1313B.1.10.000236
ORF7b3E3AgAagCa1313B.1.1.70.000012
ORF7b3E3del2gAAg--813B.1.1.70.000007
ORF7b3E3del2GAa--a513B.1.1.70.000004
ORF7b3E3XGaaTaa1212AY.230.000837
ORF7b3E3GgAagGa1212AY.40.000019
ORF7b3E3XGaaTaa1212B.10.00011
ORF7b3E3XGaaTaa1212B.1.10.000218
ORF7b3E3del1Gaa-aa1212B.1.1.2140.000665
ORF7b3E3del1Gaa-aa1212B.1.4270.000606
ORF7b3E3XGaaTaa1212B.1.5260.000282
ORF7b3E3EgaAgaG1111AY.1030.000068
ORF7b3E3delGAA---1111AY.260.000311
ORF7b3E3XGaaTaa1111AY.30.000109
ORF7b3E3KGaaAaa1111AY.430.000049
ORF7b3E3del1Gaa-aa911AY.430.00004
ORF7b3E3del1GaA-aT111AY.430.000004
ORF7b3E3del1GAA-NN111AY.430.000004
ORF7b3E3del1Gaa-aa1011B.1.10.000181
ORF7b3E3del1gAag-a111B.1.10.000018
ORF7b3E3XGaaTaa1111B.1.1.5190.000437
ORF7b3E3QGaaCaa1111B.1.617.20.000041
ORF7b3E3delGAA---1111B.1.617.20.000041
ORF7b3E3KGaaAaa1111Q.10.00139
ORF7b3E3KGaaAaa1010AY.470.000311
ORF7b3E3KGaaAaa1010AY.75.10.001803
ORF7b3E3del1Gaa-aa1010AY.99.20.000922
ORF7b3E3delGAA---1010B.1.2340.001319
ORF7b3E3del1Gaa-aa1010B.1.3510.000297
ORF7b3E3XGaaTaa1010B.1.351.20.003026
ORF7b3E3delGAA---1010Q.80.001649
ORF7b3E3del1Gaa-aa99AY.30.00009
ORF7b3E3XGaaTaa99B.1.1.500.00611
ORF7b3E3XGaaTaa99B.1.177.810.001704
ORF7b3E3del1Gaa-aa99D.20.000675
ORF7b3E3del1Gaa-aa88AY.1000.000368
ORF7b3E3EgaAgaG88B.1.1.70.000007
ORF7b3E3delGAA---88B.1.1770.000105
ORF7b3E3del1Gaa-aa88C.370.000929
ORF7b3E3delGAA---77AY.1030.000043
ORF7b3E3XGaaTaa77AY.390.000173
ORF7b3E3del2gAAg--77AY.470.000218
ORF7b3E3XGaaTaa77AY.98.10.000339
ORF7b3E3del1Gaa-aa67B.10.000055
ORF7b3E3del1GAa-Na17B.10.000009
ORF7b3E3del1Gaa-aa77B.1.1600.000218
ORF7b3E3QGaaCaa77B.1.1770.000092
ORF7b3E3del1Gaa-aa77B.1.4290.000165
ORF7b3E3XGaaTaa66AY.420.000241
ORF7b3E3QGaaCaa66AY.430.000027
ORF7b3E3QGaaCaa66AY.440.000037
ORF7b3E3AgAagCa66AY.440.000037
ORF7b3E3XGaaTaa66AY.850.002563
ORF7b3E3QGaaCaa66B.1.10.000109
ORF7b3E3XGaaTaa66B.1.1.280.001867
ORF7b3E3KGaaAaa66B.1.1.2840.000644
ORF7b3E3delGAA---66B.1.1.5190.000238
ORF7b3E3del1Gaa-aa66B.1.1770.000079
ORF7b3E3XGaaTaa66B.1.360.000875
ORF7b3E3QGaaCaa66B.1.360.000875
ORF7b3E3AgAagCa66B.1.617.20.000023
ORF7b3E3KGaaAaa66P.10.000095
ORF7b3E3del1Gaa-aa56P.1.140.000239
ORF7b3E3del1gaAga-16P.1.140.000048
ORF7b3E3GgAagGa55AY.1030.000031
ORF7b3E3KGaaAaa55AY.1190.000177
ORF7b3E3KGaaAaa55AY.30.00005
ORF7b3E3del2gAAg--55AY.330.000334
ORF7b3E3del1Gaa-aa55AY.390.000124
ORF7b3E3VgAagTa55AY.40.000008
ORF7b3E3KGaaAaa55AY.50.000103
ORF7b3E3XGaaTaa55AY.610.000524
ORF7b3E3delGAA---55B.1.1.2140.000277
ORF7b3E3XGaaTaa55B.1.1.3170.002058
ORF7b3E3QGaaCaa55B.1.20.000044
ORF7b3E3XGaaTaa55B.1.2210.000355
ORF7b3E3KGaaAaa55B.1.2340.00066
ORF7b3E3delGAA---55B.1.36.290.002587
ORF7b3E3EgaAgaG55B.1.617.20.000019
ORF7b3E3XGaaTaa55P.1.140.000239
ORF7b3E3XGaaTaa44AY.1000.000184
ORF7b3E3AgAagCa44AY.1030.000025
ORF7b3E3del1Gaa-aa44AY.1140.000924
ORF7b3E3XGaaTaa44AY.1190.000141
ORF7b3E3delGAA---44AY.440.000024
ORF7b3E3VgAagTa44AY.620.001743
ORF7b3E3XGaaTaa44AY.750.000224
ORF7b3E3del1Gaa-aa44AY.790.004843
ORF7b3E3del1Gaa-aa44B.1.1.2200.007435
ORF7b3E3delGAA---44B.1.1.2840.00043
ORF7b3E3XGaaTaa44B.1.1.3690.001785
ORF7b3E3GgAagGa44B.1.20.000035
ORF7b3E3delGAA---44B.1.4290.000094
ORF7b3E3QGaaCaa44B.1.5230.009804
ORF7b3E3XGaaTaa44B.1.5610.001588
ORF7b3E3del1Gaa-aa44B.1.5950.001044
ORF7b3E3del1Gaa-aa44B.1.6210.000354
ORF7b3E3XGaaTaa44B.1.6370.000292
ORF7b3E3del1Gaa-aa44B.1.6370.000292
ORF7b3E3QGaaCaa44P.10.000063
ORF7b3E3delGAA---44P.1.150.000929
ORF7b3E3XGaaTaa44P.1.170.000647
ORF7b3E3QGaaCaa44P.20.000747
ORF7b3E3del1Gaa-aa44P.20.000747
ORF7b3E3XGaaTaa44P.20.000747
ORF7b3E3XGaaTaa44Q.10.000505
ORF7b3E3XGaaTaa330.166667
ORF7b3E3LGAaTTa33All0.000001
ORF7b3E3KGaaAaa33AY.1030.000019
ORF7b3E3KGaaAaa33AY.1200.000112
ORF7b3E3QGaaCaa33AY.230.000209
ORF7b3E3XGaaTaa33AY.290.000047
ORF7b3E3QGaaCaa33AY.330.0002
ORF7b3E3del1Gaa-aa33AY.330.0002
ORF7b3E3XGaaTaa33AY.400.002893
ORF7b3E3del1Gaa-aa33AY.440.000018
ORF7b3E3GgAagGa33AY.440.000018
ORF7b3E3XGaaTaa33AY.450.000365
ORF7b3E3del1Gaa-aa33AY.460.000312
ORF7b3E3delGAA---33AY.470.000093
ORF7b3E3del1Gaa-aa33AY.50.000062
ORF7b3E3delGAA---33AY.650.001599
ORF7b3E3XGaaTaa33AY.670.001393
ORF7b3E3del1Gaa-aa33AY.690.00056
ORF7b3E3XGaaTaa33AY.99.20.000276
ORF7b3E3XGaaTaa23B0.000256
ORF7b3E3XGAaTGa13B0.000128
ORF7b3E3delGAA---33B.1.1.2320.005445
ORF7b3E3XGaaTaa33B.1.1.2980.002586
ORF7b3E3delGAA---33B.1.1.370.000579
ORF7b3E3del1Gaa-aa33B.1.1.4340.001046
ORF7b3E3del1Gaa-aa33B.1.1.570.034483
ORF7b3E3XGaaTaa33B.1.177.600.000655
ORF7b3E3EgaAgaG33B.1.20.000026
ORF7b3E3delGAA---33B.1.2140.010989
ORF7b3E3XGaaTaa33B.1.2180.015464
ORF7b3E3XGaaTaa33B.1.2340.000396
ORF7b3E3delGAA---33B.1.3510.000089
ORF7b3E3QGaaCaa33B.1.3510.000089
ORF7b3E3XGaaTaa33B.1.5250.000339
ORF7b3E3KGaaAaa33B.1.5260.000071
ORF7b3E3del1Gaa-aa33B.1.5260.000071
ORF7b3E3delGAA---33B.1.5960.000261
ORF7b3E3delGAA---33B.1.6210.000266
ORF7b3E3delGAA---33B.1.6260.017143
ORF7b3E3del1Gaa-aa33B.1.6280.001057
ORF7b3E3delGAA---33P.1.140.000143
ORF7b3E3XGaaTaa33R.10.00027
ORF7b3E3AgAagCa220.111111
ORF7b3E3TGAaACa220.111111
ORF7b3E3KGaaAaa220.111111
ORF7b3E3TGAaACa22All0
ORF7b3E3KGaaAaa22AY.1020.000053
ORF7b3E3QGaaCaa22AY.1020.000053
ORF7b3E3del2GAa--a22AY.1020.000053
ORF7b3E3QGaaCaa22AY.1030.000012
ORF7b3E3delGAA---22AY.1080.002205
ORF7b3E3XGaaTaa22AY.1130.000285
ORF7b3E3delGAA---22AY.1130.000285
ORF7b3E3XGaaTaa22AY.1160.000574
ORF7b3E3delGAA---22AY.1200.000074
ORF7b3E3QGaaCaa22AY.290.000032
ORF7b3E3QGaaCaa22AY.30.00002
ORF7b3E3delGAA---22AY.300.000791
ORF7b3E3KGaaAaa22AY.330.000134
ORF7b3E3delGAA---22AY.390.000049
ORF7b3E3AgAagCa22AY.40.000003
ORF7b3E3delGAA---22AY.4.20.000043
ORF7b3E3EgaAgaG22AY.430.000009
ORF7b3E3del2gAAg--22AY.440.000012
ORF7b3E3XGaaTaa22AY.460.000208
ORF7b3E3XGaaTaa22AY.50.000041
ORF7b3E3QGaaCaa22AY.680.000547
ORF7b3E3QGaaCaa22AY.700.000417
ORF7b3E3XGaaTaa22AY.740.000231
ORF7b3E3XGaaTaa22AY.860.00166
ORF7b3E3del1Gaa-aa22AY.940.000885
ORF7b3E3VgAagTa22AZ.10.001735
ORF7b3E3GgAagGa22B.10.000018
ORF7b3E3KGaaAaa22B.10.000018
ORF7b3E3KGaaAaa22B.1.10.000036
ORF7b3E3KGaaAaa22B.1.1.1630.015267
ORF7b3E3XGaaTaa22B.1.1.2140.000111
ORF7b3E3QGaaCaa22B.1.1.2220.000408
ORF7b3E3XGaATaG12B.1.1.2820.011628
ORF7b3E3XGaaTaa12B.1.1.2820.011628
ORF7b3E3del1Gaa-aa22B.1.1.330.000842
ORF7b3E3XGaaTaa22B.1.1.3480.001592
ORF7b3E3QGaaCaa22B.1.1.3690.000892
ORF7b3E3QGaaCaa22B.1.1.370.000386
ORF7b3E3del1Gaa-aa22B.1.1.5190.000079
ORF7b3E3DgaAgaT12B.1.1.70.000001
ORF7b3E3DgaAgaC12B.1.1.70.000001
ORF7b3E3XGaaTaa22B.1.1600.000062
ORF7b3E3del1Gaa-aa22B.1.177.160.001329
ORF7b3E3XGaaTaa22B.1.177.210.000153
ORF7b3E3QGaaCaa22B.1.177.40.000422
ORF7b3E3delGAA---22B.1.177.600.000437
ORF7b3E3del1Gaa-aa22B.1.177.70.00033
ORF7b3E3QGaaCaa22B.1.1990.008264
ORF7b3E3del2gAAg--22B.1.20.000018
ORF7b3E3delGAA---22B.1.2430.000139
ORF7b3E3QGaaCaa22B.1.2580.000133
ORF7b3E3del1Gaa-aa12B.1.2580.000067
ORF7b3E3del1GAA-NN12B.1.2580.000067
ORF7b3E3GgAagGa22B.1.3080.068966
ORF7b3E3KGaaAaa22B.1.3510.000059
ORF7b3E3del1Gaa-aa22B.1.351.20.000605
ORF7b3E3delGAA---22B.1.360.000292
ORF7b3E3KGaaAaa22B.1.360.000292
ORF7b3E3del1Gaa-aa22B.1.36.220.002415
ORF7b3E3QGaaCaa22B.1.36.380.003284
ORF7b3E3QGaaCaa22B.1.36.80.002
ORF7b3E3XGaaTaa22B.1.4080.00738
ORF7b3E3QGaaCaa22B.1.4290.000047
ORF7b3E3XGaaTaa22B.1.4700.002809
ORF7b3E3QGaaCaa22B.1.5260.000047
ORF7b3E3EgaAgaG22B.1.5260.000047
ORF7b3E3delGAA---22B.1.5260.000047
ORF7b3E3GgAagGa22B.1.617.20.000008
ORF7b3E3XGaaTaa22B.1.6180.008065
ORF7b3E3XGaaTaa22B.1.6230.001073
ORF7b3E3QGaaCaa22C.110.021277
ORF7b3E3XGaaTaa22C.350.001548
ORF7b3E3XGaaTaa22C.36.3.10.005435
ORF7b3E3VgAagTa22C.370.000232
ORF7b3E3EgaAgaG22P.10.000032
ORF7b3E3AgAagCa22P.10.000032
ORF7b3E3delGAA---22P.1.10.000635
ORF7b3E3XGaaTaa22P.1.100.000539
ORF7b3E3delGAA---22Q.10.000253
ORF7b3E3del1Gaa-aa22Q.10.000253
ORF7b3E3XGaaTaa22Q.80.00033
ORF7b3E3KGaaAaa22R.10.00018
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