CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 25

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b25L25FnonsynCttTtt146514510.99044427828-27830
ORF7b25L25FnonsynCtTTtC1465140.0095563127828-27830
ORF7b25L25deldelCTT---268268127828-27830
ORF7b25L25InonsynCttAtt1661560.93975927828-27830
ORF7b25L25InonsynCtTAtC16650.030120527828-27830
ORF7b25L25InonsynCtTAtA16650.030120527828-27830
ORF7b25L25LsynctTctC98700.71428627828-27830
ORF7b25L25LsynCtTTtA9890.091836727828-27830
ORF7b25L25LsynCtTTtG9880.081632727828-27830
ORF7b25L25LsynctTctG9870.071428627828-27830
ORF7b25L25LsynctTctA9840.040816327828-27830
ORF7b25L25PnonsyncTtcCt82730.89024427828-27830
ORF7b25L25PnonsyncTTcCC8260.073170727828-27830
ORF7b25L25PnonsyncTTcCG8230.036585427828-27830
ORF7b25L25VnonsynCttGtt33250.75757627828-27830
ORF7b25L25VnonsynCtTGtG3330.090909127828-27830
ORF7b25L25VnonsynCtTGtC3330.090909127828-27830
ORF7b25L25VnonsynCtTGtA3320.060606127828-27830
ORF7b25L25RnonsyncTtcGt28160.57142927828-27830
ORF7b25L25RnonsyncTTcGC2840.14285727828-27830
ORF7b25L25RnonsyncTTcGG2830.10714327828-27830
ORF7b25L25RnonsyncTTcGA2830.10714327828-27830
ORF7b25L25RnonsynCTTAGG2810.035714327828-27830
ORF7b25L25RnonsynCTTAGA2810.035714327828-27830
ORF7b25L25SnonsynCTtTCt2490.37527828-27830
ORF7b25L25SnonsynCTTTCC2460.2527828-27830
ORF7b25L25SnonsynCTTTCG2440.16666727828-27830
ORF7b25L25SnonsynCTTAGC2420.083333327828-27830
ORF7b25L25SnonsynCTtAGt2420.083333327828-27830
ORF7b25L25SnonsynCTTTCA2410.041666727828-27830
ORF7b25L25HnonsyncTtcAt18110.61111127828-27830
ORF7b25L25HnonsyncTTcAC1870.38888927828-27830
ORF7b25L25YnonsynCTtTAt17100.58823527828-27830
ORF7b25L25YnonsynCTTTAC1770.41176527828-27830
ORF7b25L25XnonsynCTTTAA1250.41666727828-27830
ORF7b25L25XnonsynCTTTAG1240.33333327828-27830
ORF7b25L25XnonsynCTTTGA1230.2527828-27830
ORF7b25L25NnonsynCTtAAt1170.63636427828-27830
ORF7b25L25del1delctTct-1150.45454527828-27830
ORF7b25L25NnonsynCTTAAC1140.36363627828-27830
ORF7b25L25del1delcTtc-t1130.27272727828-27830
ORF7b25L25del1delCtT-tC1130.27272727828-27830
ORF7b25L25TnonsynCTtACt1040.427828-27830
ORF7b25L25AnonsynCTtGCt1040.427828-27830
ORF7b25L25AnonsynCTTGCC1030.327828-27830
ORF7b25L25TnonsynCTTACG1030.327828-27830
ORF7b25L25AnonsynCTTGCG1020.227828-27830
ORF7b25L25TnonsynCTTACC1020.227828-27830
ORF7b25L25AnonsynCTTGCA1010.127828-27830
ORF7b25L25TnonsynCTTACA1010.127828-27830
ORF7b25L25CnonsynCTtTGt950.55555627828-27830
ORF7b25L25CnonsynCTTTGC940.44444427828-27830
ORF7b25L25DnonsynCTtGAt870.87527828-27830
ORF7b25L25DnonsynCTTGAC810.12527828-27830
ORF7b25L25KnonsynCTTAAA740.57142927828-27830
ORF7b25L25KnonsynCTTAAG730.42857127828-27830
ORF7b25L25GnonsynCTTGGG620.33333327828-27830
ORF7b25L25GnonsynCTtGGt620.33333327828-27830
ORF7b25L25GnonsynCTTGGA610.16666727828-27830
ORF7b25L25GnonsynCTTGGC610.16666727828-27830
ORF7b25L25QnonsyncTTcAG530.627828-27830
ORF7b25L25QnonsyncTTcAA520.427828-27830
ORF7b25L25WnonsynCTTTGG33127828-27830
ORF7b25L25MnonsynCtTAtG33127828-27830
ORF7b25L25EnonsynCTTGAA210.527828-27830
ORF7b25L25EnonsynCTTGAG210.527828-27830

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b25L25FCttTtt14511465All0.000278
ORF7b25L25FCtTTtC141465All0.000003
ORF7b25L25FCttTtt487487B.1.1.70.000436
ORF7b25L25delCTT---268268All0.000051
ORF7b25L25ICttAtt156166All0.00003
ORF7b25L25ICtTAtC5166All0.000001
ORF7b25L25ICtTAtA5166All0.000001
ORF7b25L25FCttTtt102102B.1.4290.0024
ORF7b25L25LctTctC7098All0.000013
ORF7b25L25LCtTTtA998All0.000002
ORF7b25L25LCtTTtG898All0.000002
ORF7b25L25LctTctG798All0.000001
ORF7b25L25LctTctA498All0.000001
ORF7b25L25PcTtcCt7382All0.000014
ORF7b25L25PcTTcCC682All0.000001
ORF7b25L25PcTTcCG382All0.000001
ORF7b25L25FCttTtt7979AY.40.000123
ORF7b25L25FCttTtt7575B.1.1770.000988
ORF7b25L25FCttTtt6868B.1.20.000599
ORF7b25L25FCttTtt5959B.1.617.20.000222
ORF7b25L25delCTT---5656AY.40.000087
ORF7b25L25delCTT---4444B.1.2430.003062
ORF7b25L25ICttAtt4343AY.120.01359
ORF7b25L25FCttTtt3439B.10.000311
ORF7b25L25FCtTTtC539B.10.000046
ORF7b25L25FCttTtt3636B.1.5250.004074
ORF7b25L25delCTT---3535AY.290.000552
ORF7b25L25VCttGtt2533All0.000005
ORF7b25L25VCtTGtC333All0.000001
ORF7b25L25VCtTGtG333All0.000001
ORF7b25L25VCtTGtA233All0
ORF7b25L25delCTT---3232B.1.1.70.000029
ORF7b25L25RcTtcGt1628All0.000003
ORF7b25L25RcTTcGC428All0.000001
ORF7b25L25RcTTcGA328All0.000001
ORF7b25L25RcTTcGG328All0.000001
ORF7b25L25RCTTAGA128All0
ORF7b25L25RCTTAGG128All0
ORF7b25L25FCttTtt2828B.1.1.1010.28
ORF7b25L25FCttTtt2627B.1.10.000472
ORF7b25L25FCtTTtC127B.1.10.000018
ORF7b25L25ICttAtt2626B.1.160.80.033505
ORF7b25L25SCTtTCt924All0.000002
ORF7b25L25SCTTTCC624All0.000001
ORF7b25L25SCTTTCG424All0.000001
ORF7b25L25SCTTAGC224All0
ORF7b25L25SCTtAGt224All0
ORF7b25L25SCTTTCA124All0
ORF7b25L25FCttTtt2424B.1.1.4450.888889
ORF7b25L25LctTctC1323B.10.000119
ORF7b25L25LctTctG323B.10.000027
ORF7b25L25LCtTTtG323B.10.000027
ORF7b25L25LCtTTtA223B.10.000018
ORF7b25L25LctTctA223B.10.000018
ORF7b25L25FCttTtt2121P.1.150.004879
ORF7b25L25FCttTtt1919AY.430.000084
ORF7b25L25FCttTtt1919AY.98.10.00092
ORF7b25L25HcTtcAt1118All0.000002
ORF7b25L25HcTTcAC718All0.000001
ORF7b25L25YCTtTAt1017All0.000002
ORF7b25L25YCTTTAC717All0.000001
ORF7b25L25FCttTtt1717AY.440.000103
ORF7b25L25FCttTtt1616A.270.02649
ORF7b25L25ICttAtt1316B.10.000119
ORF7b25L25ICtTAtC216B.10.000018
ORF7b25L25ICtTAtA116B.10.000009
ORF7b25L25FCttTtt1415AY.390.000346
ORF7b25L25FCtTTtC115AY.390.000025
ORF7b25L25PcTtcCt1515B.1.617.20.000056
ORF7b25L25PcTtcCt1414B.1.1.70.000013
ORF7b25L25FCttTtt1313AY.260.000368
ORF7b25L25FCttTtt1313AY.29.10.002867
ORF7b25L25FCttTtt1313AY.30.000129
ORF7b25L25XCTTTAA512All0.000001
ORF7b25L25XCTTTAG412All0.000001
ORF7b25L25XCTTTGA312All0.000001
ORF7b25L25FCttTtt1212AY.1030.000075
ORF7b25L25PcTtcCt612B.10.000055
ORF7b25L25SCTTTCC412B.10.000037
ORF7b25L25PcTTcCC412B.10.000037
ORF7b25L25SCTtTCt412B.10.000037
ORF7b25L25SCTTTCG212B.10.000018
ORF7b25L25PcTTcCG212B.10.000018
ORF7b25L25SCTtAGt112B.10.000009
ORF7b25L25SCTTAGC112B.10.000009
ORF7b25L25ICttAtt1212B.1.1600.000374
ORF7b25L25FCttTtt1212P.10.000189
ORF7b25L25NCTtAAt711All0.000001
ORF7b25L25del1ctTct-511All0.000001
ORF7b25L25NCTTAAC411All0.000001
ORF7b25L25del1CtT-tC311All0.000001
ORF7b25L25del1cTtc-t311All0.000001
ORF7b25L25LctTctC1111AY.340.001067
ORF7b25L25FCttTtt1111B.1.1600.000343
ORF7b25L25TCTtACt410All0.000001
ORF7b25L25ACTtGCt410All0.000001
ORF7b25L25TCTTACG310All0.000001
ORF7b25L25ACTTGCC310All0.000001
ORF7b25L25ACTTGCG210All0
ORF7b25L25TCTTACC210All0
ORF7b25L25TCTTACA110All0
ORF7b25L25ACTTGCA110All0
ORF7b25L25VCttGtt410B.10.000037
ORF7b25L25VCtTGtC310B.10.000027
ORF7b25L25RcTtcGt310B.10.000027
ORF7b25L25VCtTGtG210B.10.000018
ORF7b25L25RcTTcGG210B.10.000018
ORF7b25L25RcTTcGC210B.10.000018
ORF7b25L25RcTTcGA210B.10.000018
ORF7b25L25RCTTAGA110B.10.000009
ORF7b25L25VCtTGtA110B.10.000009
ORF7b25L25FCttTtt1010B.1.6370.000731
ORF7b25L25delCTT---1010P.1.160.003741
ORF7b25L25CCTtTGt59All0.000001
ORF7b25L25CCTTTGC49All0.000001
ORF7b25L25LctTctC99AY.1030.000056
ORF7b25L25delCTT---99AY.1190.000318
ORF7b25L25FCttTtt99AY.420.000362
ORF7b25L25DCTtGAt78All0.000001
ORF7b25L25DCTTGAC18All0
ORF7b25L25FCttTtt88AY.1200.000297
ORF7b25L25FCttTtt88B.1.3510.000238
ORF7b25L25FCttTtt88B.1.5950.002088
ORF7b25L25KCTTAAA47All0.000001
ORF7b25L25KCTTAAG37All0.000001
ORF7b25L25delCTT---77AY.1030.000043
ORF7b25L25FCttTtt77AY.200.000272
ORF7b25L25PcTtcCt77AY.40.000011
ORF7b25L25ICttAtt77AY.40.000011
ORF7b25L25HcTtcAt47B.10.000037
ORF7b25L25YCTtTAt47B.10.000037
ORF7b25L25HcTTcAC37B.10.000027
ORF7b25L25ACTtGCt37B.10.000027
ORF7b25L25ACTTGCC37B.10.000027
ORF7b25L25YCTTTAC37B.10.000027
ORF7b25L25ACTTGCG17B.10.000009
ORF7b25L25PcTtcCt67B.1.10.000109
ORF7b25L25PcTTcCC17B.1.10.000018
ORF7b25L25delCTT---77B.1.1.2650.022082
ORF7b25L25GCTTGGG26All0
ORF7b25L25GCTtGGt26All0
ORF7b25L25GCTTGGA16All0
ORF7b25L25GCTTGGC16All0
ORF7b25L25ICttAtt66AU.30.012658
ORF7b25L25FCttTtt66AY.1000.000276
ORF7b25L25FCttTtt66AY.1020.000159
ORF7b25L25FCttTtt66AY.3.10.000512
ORF7b25L25FCttTtt66AY.540.000572
ORF7b25L25GCTTGGG26B.10.000018
ORF7b25L25GCTtGGt26B.10.000018
ORF7b25L25GCTTGGA16B.10.000009
ORF7b25L25GCTTGGC16B.10.000009
ORF7b25L25SCTtTCt36B.1.10.000054
ORF7b25L25SCTTTCC16B.1.10.000018
ORF7b25L25SCTTTCA16B.1.10.000018
ORF7b25L25SCTTTCG16B.1.10.000018
ORF7b25L25LctTctC66B.1.1.280.001867
ORF7b25L25ICttAtt66B.1.1.70.000005
ORF7b25L25FCttTtt66B.1.2650.007624
ORF7b25L25FCttTtt56P.1.10.001588
ORF7b25L25FCtTTtC16P.1.10.000318
ORF7b25L25QcTTcAG35All0.000001
ORF7b25L25QcTTcAA25All0
ORF7b25L25FCttTtt55AY.1180.000313
ORF7b25L25FCttTtt55AY.1190.000177
ORF7b25L25PcTtcCt55AY.170.040984
ORF7b25L25CCTtTGt35B.10.000027
ORF7b25L25NCTtAAt35B.10.000027
ORF7b25L25NCTTAAC25B.10.000018
ORF7b25L25CCTTTGC25B.10.000018
ORF7b25L25ICttAtt45B.1.10.000073
ORF7b25L25LCtTTtG25B.1.10.000036
ORF7b25L25ICtTAtA15B.1.10.000018
ORF7b25L25LctTctC15B.1.10.000018
ORF7b25L25LctTctG15B.1.10.000018
ORF7b25L25LCtTTtA15B.1.10.000018
ORF7b25L25FCttTtt55B.1.1.2070.00591
ORF7b25L25FCttTtt55B.1.1.5190.000199
ORF7b25L25FCttTtt55B.1.36.220.006039
ORF7b25L25ICttAtt55B.1.6370.000365
ORF7b25L25FCttTtt34AY.850.001282
ORF7b25L25FCtTTtC14AY.850.000427
ORF7b25L25XCTTTGA24B.10.000018
ORF7b25L25XCTTTAA14B.10.000009
ORF7b25L25XCTTTAG14B.10.000009
ORF7b25L25delCTT---44B.1.10.000073
ORF7b25L25TCTtACt24B.1.10.000036
ORF7b25L25TCTTACA14B.1.10.000018
ORF7b25L25TCTTACG14B.1.10.000018
ORF7b25L25delCTT---44B.1.1.2140.000222
ORF7b25L25FCttTtt44B.1.1.2260.023256
ORF7b25L25RcTTcGC14B.1.177.730.000566
ORF7b25L25RcTTcGG14B.1.177.730.000566
ORF7b25L25RcTtcGt14B.1.177.730.000566
ORF7b25L25RCTTAGG14B.1.177.730.000566
ORF7b25L25LctTctC44B.1.177.80.00301
ORF7b25L25delCTT---44B.1.20.000035
ORF7b25L25FCttTtt44B.1.2210.000284
ORF7b25L25FCttTtt44B.1.2430.000278
ORF7b25L25ICttAtt44B.1.2430.000278
ORF7b25L25del1CtT-tC24B.1.2430.000139
ORF7b25L25del1ctTct-24B.1.2430.000139
ORF7b25L25FCttTtt44B.1.4690.01444
ORF7b25L25MCtTAtG33All0.000001
ORF7b25L25WCTTTGG33All0.000001
ORF7b25L25delCTT---33AY.1180.000188
ORF7b25L25FCttTtt33AY.250.000018
ORF7b25L25delCTT---33AY.250.000018
ORF7b25L25ICtTAtA23AY.30.00002
ORF7b25L25ICttAtt13AY.30.00001
ORF7b25L25FCttTtt33AY.4.20.000065
ORF7b25L25delCTT---33AY.430.000013
ORF7b25L25FCttTtt33AY.590.001589
ORF7b25L25FCttTtt33AY.60.000123
ORF7b25L25TCTTACG13B.10.000009
ORF7b25L25TCTtACt13B.10.000009
ORF7b25L25TCTTACC13B.10.000009
ORF7b25L25VCtTGtA13B.1.10.000018
ORF7b25L25VCtTGtG13B.1.10.000018
ORF7b25L25VCttGtt13B.1.10.000018
ORF7b25L25ACTTGCG13B.1.10.000018
ORF7b25L25ACTTGCA13B.1.10.000018
ORF7b25L25ACTtGCt13B.1.10.000018
ORF7b25L25DCTtGAt33B.1.1.2650.009464
ORF7b25L25FCttTtt33B.1.1.330.001263
ORF7b25L25FCttTtt23B.1.1.4090.005666
ORF7b25L25FCtTTtC13B.1.1.4090.002833
ORF7b25L25LCtTTtA13B.1.1.4090.002833
ORF7b25L25LctTctA13B.1.1.4090.002833
ORF7b25L25ICtTAtC13B.1.1.4090.002833
ORF7b25L25ICtTAtA13B.1.1.4090.002833
ORF7b25L25ICttAtt13B.1.1.4090.002833
ORF7b25L25LctTctC13B.1.1.4090.002833
ORF7b25L25FCttTtt33B.1.1700.012931
ORF7b25L25PcTtcCt33B.1.1770.00004
ORF7b25L25FCttTtt23B.1.177.730.001133
ORF7b25L25LCtTTtG13B.1.177.730.000566
ORF7b25L25LctTctG13B.1.177.730.000566
ORF7b25L25LctTctC13B.1.177.730.000566
ORF7b25L25FCtTTtC13B.1.177.730.000566
ORF7b25L25ICttAtt33B.1.20.000026
ORF7b25L25VCttGtt33B.1.2430.000209
ORF7b25L25FCttTtt33B.1.2910.057692
ORF7b25L25FCttTtt33B.1.360.000438
ORF7b25L25delCTT---33B.1.360.000438
ORF7b25L25ICttAtt33B.1.617.20.000011
ORF7b25L25LctTctC33B.1.617.20.000011
ORF7b25L25RcTtcGt13B.1.6270.00202
ORF7b25L25LCtTTtA13B.1.6270.00202
ORF7b25L25RcTTcGA13B.1.6270.00202
ORF7b25L25RcTTcGC13B.1.6270.00202
ORF7b25L25LctTctA13B.1.6270.00202
ORF7b25L25LctTctC13B.1.6270.00202
ORF7b25L25PcTtcCt33P.10.000047
ORF7b25L25LctTctG13P.1.10.000318
ORF7b25L25LctTctC13P.1.10.000318
ORF7b25L25LCtTTtG13P.1.10.000318
ORF7b25L25FCttTtt220.111111
ORF7b25L25delCTT---220.111111
ORF7b25L25VCttGtt220.111111
ORF7b25L25HcTtcAt220.111111
ORF7b25L25DCTtGAt220.111111
ORF7b25L25SCTtTCt120.055556
ORF7b25L25SCTTTCG120.055556
ORF7b25L25LCtTTtG120.055556
ORF7b25L25LctTctG120.055556
ORF7b25L25PcTTcCG120.055556
ORF7b25L25PcTtcCt120.055556
ORF7b25L25ECTTGAG12All0
ORF7b25L25ECTTGAA12All0
ORF7b25L25LCtTTtA22AY.1020.000053
ORF7b25L25FCttTtt22AY.1050.001286
ORF7b25L25VCttGtt22AY.1070.000932
ORF7b25L25FCttTtt22AY.140.000176
ORF7b25L25delCTT---22AY.200.000078
ORF7b25L25FCttTtt22AY.230.000139
ORF7b25L25LctTctC22AY.250.000012
ORF7b25L25ICttAtt22AY.250.000012
ORF7b25L25LCtTTtA22AY.30.00002
ORF7b25L25XCTTTAA22AY.30.00002
ORF7b25L25KCTTAAA22AY.30.00002
ORF7b25L25delCTT---22AY.300.000791
ORF7b25L25FCttTtt22AY.350.000466
ORF7b25L25FCttTtt22AY.39.10.000079
ORF7b25L25FCttTtt22AY.4.2.10.000298
ORF7b25L25ICttAtt22AY.430.000009
ORF7b25L25VCttGtt22AY.430.000009
ORF7b25L25delCTT---22AY.480.00093
ORF7b25L25PcTtcCt22AY.50.000041
ORF7b25L25LctTctC22AY.610.00021
ORF7b25L25FCttTtt22AY.9.20.000073
ORF7b25L25delCTT---22AZ.20.001642
ORF7b25L25delCTT---22B.10.000018
ORF7b25L25WCTTTGG22B.10.000018
ORF7b25L25QcTTcAA12B.10.000009
ORF7b25L25DCTtGAt12B.10.000009
ORF7b25L25QcTTcAG12B.10.000009
ORF7b25L25DCTTGAC12B.10.000009
ORF7b25L25KCTTAAG12B.10.000009
ORF7b25L25KCTTAAA12B.10.000009
ORF7b25L25KCTTAAA12B.1.10.000018
ORF7b25L25KCTTAAG12B.1.10.000018
ORF7b25L25XCTTTAA12B.1.10.000018
ORF7b25L25XCTTTAG12B.1.10.000018
ORF7b25L25ECTTGAG12B.1.10.000018
ORF7b25L25ECTTGAA12B.1.10.000018
ORF7b25L25FCttTtt22B.1.1.10.000653
ORF7b25L25FCttTtt22B.1.1.2220.000408
ORF7b25L25FCttTtt22B.1.1.2910.001485
ORF7b25L25VCttGtt22B.1.1.70.000002
ORF7b25L25SCTTTCC12B.1.1390.000733
ORF7b25L25FCttTtt12B.1.1390.000733
ORF7b25L25PcTTcCC12B.1.1390.000733
ORF7b25L25ICttAtt12B.1.1390.000733
ORF7b25L25PcTtcCt12B.1.1390.000733
ORF7b25L25HcTTcAC12B.1.1390.000733
ORF7b25L25ICtTAtC12B.1.1390.000733
ORF7b25L25YCTTTAC12B.1.1390.000733
ORF7b25L25NCTTAAC12B.1.1390.000733
ORF7b25L25YCTtTAt12B.1.1390.000733
ORF7b25L25FCtTTtC12B.1.1390.000733
ORF7b25L25TCTtACt12B.1.1390.000733
ORF7b25L25SCTtTCt12B.1.1390.000733
ORF7b25L25TCTTACC12B.1.1390.000733
ORF7b25L25NCTtAAt12B.1.1390.000733
ORF7b25L25HcTtcAt12B.1.1390.000733
ORF7b25L25delCTT---22B.1.177.120.000303
ORF7b25L25FCttTtt22B.1.177.320.002699
ORF7b25L25FCttTtt22B.1.177.650.001331
ORF7b25L25NCTtAAt12B.1.177.730.000566
ORF7b25L25SCTTAGC12B.1.177.730.000566
ORF7b25L25ICttAtt12B.1.177.730.000566
ORF7b25L25CCTTTGC12B.1.177.730.000566
ORF7b25L25SCTtAGt12B.1.177.730.000566
ORF7b25L25ICtTAtC12B.1.177.730.000566
ORF7b25L25NCTTAAC12B.1.177.730.000566
ORF7b25L25YCTTTAC12B.1.177.730.000566
ORF7b25L25HcTTcAC12B.1.177.730.000566
ORF7b25L25YCTtTAt12B.1.177.730.000566
ORF7b25L25HcTtcAt12B.1.177.730.000566
ORF7b25L25CCTtTGt12B.1.177.730.000566
ORF7b25L25VCttGtt22B.1.20.000018
ORF7b25L25del1ctTct-22B.1.20.000018
ORF7b25L25FCttTtt22B.1.2400.000431
ORF7b25L25FCttTtt22B.1.2580.000133
ORF7b25L25ICttAtt22B.1.2580.000133
ORF7b25L25ICttAtt22B.1.3510.000059
ORF7b25L25FCttTtt22B.1.438.10.000215
ORF7b25L25FCttTtt22B.1.5260.000047
ORF7b25L25FCttTtt22B.1.5960.000174
ORF7b25L25PcTtcCt22B.1.5960.000174
ORF7b25L25HcTtcAt12B.1.6270.00202
ORF7b25L25FCtTTtC12B.1.6270.00202
ORF7b25L25HcTTcAC12B.1.6270.00202
ORF7b25L25XCTTTAA12B.1.6270.00202
ORF7b25L25YCTTTAC12B.1.6270.00202
ORF7b25L25YCTtTAt12B.1.6270.00202
ORF7b25L25XCTTTGA12B.1.6270.00202
ORF7b25L25CCTtTGt12B.1.6270.00202
ORF7b25L25FCttTtt12B.1.6270.00202
ORF7b25L25CCTTTGC12B.1.6270.00202
ORF7b25L25delCTT---22P.1.10.000635
ORF7b25L25YCTTTAC12P.1.10.000318
ORF7b25L25YCTtTAt12P.1.10.000318
ORF7b25L25HcTTcAC12P.1.10.000318
ORF7b25L25HcTtcAt12P.1.10.000318
ORF7b25L25delCTT---22P.1.140.000096
ORF7b25L25RcTtcGt22P.1.140.000096
ORF7b25L25delCTT---11A.10.000282
ORF7b25L25delCTT---11A.23.10.000704
ORF7b25L25delCTT---11AY.1020.000027
ORF7b25L25VCttGtt11AY.1030.000006
ORF7b25L25ICttAtt11AY.1030.000006
ORF7b25L25FCtTTtC11AY.1080.001103
ORF7b25L25LctTctC11AY.1110.000183
ORF7b25L25FCttTtt11AY.1130.000142
ORF7b25L25LctTctC11AY.1170.000085
ORF7b25L25ICttAtt11AY.1170.000085
ORF7b25L25VCttGtt11AY.1190.000035
ORF7b25L25FCttTtt11AY.130.000161
ORF7b25L25LctTctC11AY.160.00038
ORF7b25L25PcTtcCt11AY.160.00038
ORF7b25L25ICttAtt11AY.16.10.00047
ORF7b25L25FCttTtt11AY.16.10.00047
ORF7b25L25LctTctC11AY.16.10.00047
ORF7b25L25PcTtcCt11AY.200.000039
ORF7b25L25ICttAtt11AY.200.000039
ORF7b25L25PcTtcCt11AY.250.000006
ORF7b25L25RcTtcGt11AY.250.000006
ORF7b25L25delCTT---11AY.260.000028
ORF7b25L25FCttTtt11AY.290.000016
ORF7b25L25del1ctTct-11AY.290.000016
ORF7b25L25delCTT---11AY.29.10.000221
ORF7b25L25YCTtTAt11AY.30.00001
ORF7b25L25NCTtAAt11AY.30.00001
ORF7b25L25FCttTtt11AY.300.000396
ORF7b25L25ICttAtt11AY.330.000067
ORF7b25L25PcTtcCt11AY.330.000067
ORF7b25L25FCttTtt11AY.360.000148
ORF7b25L25delCTT---11AY.39.10.00004
ORF7b25L25LctTctC11AY.40.000002
ORF7b25L25VCttGtt11AY.40.000002
ORF7b25L25delCTT---11AY.4.20.000022
ORF7b25L25RcTtcGt11AY.430.000004
ORF7b25L25delCTT---11AY.440.000006
ORF7b25L25ICttAtt11AY.440.000006
ORF7b25L25FCttTtt11AY.460.000104
ORF7b25L25FCttTtt11AY.46.50.000198
ORF7b25L25VCttGtt11AY.46.60.000072
ORF7b25L25FCttTtt11AY.470.000031
ORF7b25L25FCttTtt11AY.50.000021
ORF7b25L25FCttTtt11AY.5.40.000277
ORF7b25L25LctTctC11AY.520.000814
ORF7b25L25RcTtcGt11AY.530.000288
ORF7b25L25delCTT---11AY.580.000907
ORF7b25L25PcTtcCt11AY.610.000105
ORF7b25L25FCttTtt11AY.770.001127
ORF7b25L25del1CtT-tC11AY.850.000427
ORF7b25L25delCTT---11AY.9.10.000084
ORF7b25L25LctTctC11AY.920.000287
ORF7b25L25FCttTtt11AY.950.000761
ORF7b25L25FCttTtt11AY.980.000079
ORF7b25L25delCTT---11AY.98.10.000048
ORF7b25L25ICttAtt11AY.99.20.000092
ORF7b25L25FCttTtt11B0.000128
ORF7b25L25MCtTAtG11B.10.000009
ORF7b25L25del1cTtc-t11B.10.000009
ORF7b25L25YCTtTAt11B.1.10.000018
ORF7b25L25RcTtcGt11B.1.10.000018
ORF7b25L25MCtTAtG11B.1.10.000018
ORF7b25L25DCTtGAt11B.1.10.000018
ORF7b25L25NCTtAAt11B.1.10.000018
ORF7b25L25LctTctC11B.1.1.100.001115
ORF7b25L25FCttTtt11B.1.1.1590.004673
ORF7b25L25FCttTtt11B.1.1.1630.007634
ORF7b25L25FCttTtt11B.1.1.2160.00089
ORF7b25L25FCttTtt11B.1.1.2320.001815
ORF7b25L25VCttGtt11B.1.1.2650.003155
ORF7b25L25FCttTtt11B.1.1.280.000311
ORF7b25L25FCttTtt11B.1.1.2820.011628
ORF7b25L25FCttTtt11B.1.1.2840.000107
ORF7b25L25FCttTtt11B.1.1.3060.000438
ORF7b25L25FCttTtt11B.1.1.3070.002532
ORF7b25L25FCttTtt11B.1.1.3110.000358
ORF7b25L25FCttTtt11B.1.1.3170.000412
ORF7b25L25delCTT---11B.1.1.3180.000302
ORF7b25L25LctTctC11B.1.1.3180.000302
ORF7b25L25FCttTtt11B.1.1.3260.001761
ORF7b25L25FCttTtt11B.1.1.3720.000689
ORF7b25L25FCttTtt11B.1.1.3970.002252
ORF7b25L25LctTctC11B.1.1.4320.001266
ORF7b25L25delCTT---11B.1.1.440.00241
ORF7b25L25FCttTtt11B.1.1.4400.011765
ORF7b25L25FCttTtt11B.1.1.4870.005587
ORF7b25L25VCttGtt11B.1.1.5190.00004
ORF7b25L25RcTtcGt11B.1.1.70.000001
ORF7b25L25HcTtcAt11B.1.1.70.000001
ORF7b25L25LctTctC11B.1.1.70.000001
ORF7b25L25FCttTtt11B.1.1.700.000341
ORF7b25L25LctTctC11B.1.1390.000733
ORF7b25L25FCttTtt11B.1.160.310.008065
ORF7b25L25ICttAtt11B.1.1770.000013
ORF7b25L25delCTT---11B.1.1770.000013
ORF7b25L25RcTtcGt11B.1.177.120.000152
ORF7b25L25FCttTtt11B.1.177.170.000821
ORF7b25L25FCttTtt11B.1.177.330.001645
ORF7b25L25FCttTtt11B.1.177.480.003125
ORF7b25L25WCTTTGG11B.1.177.730.000566
ORF7b25L25KCTTAAG11B.1.177.730.000566
ORF7b25L25QcTTcAG11B.1.177.730.000566
ORF7b25L25MCtTAtG11B.1.177.730.000566
ORF7b25L25XCTTTAG11B.1.177.730.000566
ORF7b25L25FCttTtt11B.1.177.860.000183
ORF7b25L25FCttTtt11B.1.177.870.000728
ORF7b25L25LctTctC11B.1.2210.000071
ORF7b25L25ICttAtt11B.1.2210.000071
ORF7b25L25FCttTtt11B.1.2220.001692
ORF7b25L25FCttTtt11B.1.2320.000537
ORF7b25L25delCTT---11B.1.2340.000132
ORF7b25L25RcTtcGt11B.1.2430.00007
ORF7b25L25LctTctC11B.1.2580.000067
ORF7b25L25delCTT---11B.1.258.140.00098
ORF7b25L25FCttTtt11B.1.3490.000715
ORF7b25L25FCttTtt11B.1.351.10.038462
ORF7b25L25del1cTtc-t11B.1.360.000146
ORF7b25L25FCttTtt11B.1.36.10.00114
ORF7b25L25FCttTtt11B.1.3610.001289
ORF7b25L25delCTT---11B.1.3670.000792
ORF7b25L25FCttTtt11B.1.3690.000285
ORF7b25L25RcTtcGt11B.1.3980.002976
ORF7b25L25FCttTtt11B.1.4270.00005
ORF7b25L25delCTT---11B.1.4290.000024
ORF7b25L25PcTtcCt11B.1.4290.000024
ORF7b25L25FCttTtt11B.1.4450.011765
ORF7b25L25FCttTtt11B.1.4530.003236
ORF7b25L25FCttTtt11B.1.4620.007246
ORF7b25L25delCTT---11B.1.4680.005714
ORF7b25L25LctTctC11B.1.5260.000024
ORF7b25L25PcTtcCt11B.1.5770.000687
ORF7b25L25delCTT---11B.1.5820.000491
ORF7b25L25ICttAtt11B.1.5950.000261
ORF7b25L25delCTT---11B.1.617.20.000004
ORF7b25L25TCTTACG11B.1.617.20.000004
ORF7b25L25RcTtcGt11B.1.617.20.000004
ORF7b25L25VCttGtt11B.1.617.20.000004
ORF7b25L25FCttTtt11B.1.619.10.000641
ORF7b25L25QcTTcAA11B.1.6270.00202
ORF7b25L25delCTT---11B.1.6300.005236
ORF7b25L25FCttTtt11B.60.00091
ORF7b25L25FCttTtt11C.360.000911
ORF7b25L25delCTT---11C.370.000116
ORF7b25L25ICttAtt11C.390.018868
ORF7b25L25PcTtcCt11D.20.000075
ORF7b25L25delCTT---11P.10.000016
ORF7b25L25ICttAtt11P.10.000016
ORF7b25L25QcTTcAG11P.1.10.000318
ORF7b25L25del1cTtc-t11P.1.10.000318
ORF7b25L25XCTTTAG11P.1.10.000318
ORF7b25L25delCTT---11P.1.100.000269
ORF7b25L25FCttTtt11P.1.120.000484
ORF7b25L25delCTT---11P.1.150.000232
ORF7b25L25FCttTtt11P.1.170.000162
ORF7b25L25FCttTtt11P.30.001595
ORF7b25L25FCttTtt11P.60.003145
ORF7b25L25FCttTtt11Q.10.000126
ORF7b25L25FCttTtt11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.