CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 19

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b19F19LnonsynTtcCtc190718530.97168327810-27812
ORF7b19F19LnonsynttCttA1907500.026219227810-27812
ORF7b19F19LnonsynttCttG190730.0015731527810-27812
ORF7b19F19LnonsynTtCCtT190710.00052438427810-27812
ORF7b19F19FsynttCttT763763127810-27812
ORF7b19F19deldelTTC---169169127810-27812
ORF7b19F19SnonsyntTctCc1591540.96855327810-27812
ORF7b19F19SnonsyntTCtCT15940.025157227810-27812
ORF7b19F19SnonsyntTCtCA15910.0062893127810-27812
ORF7b19F19VnonsynTtcGtc72680.94444427810-27812
ORF7b19F19VnonsynTtCGtA7240.055555627810-27812
ORF7b19F19CnonsyntTctGc65640.98461527810-27812
ORF7b19F19CnonsyntTCtGT6510.015384627810-27812
ORF7b19F19InonsynTtcAtc26240.92307727810-27812
ORF7b19F19InonsynTtCAtT2620.076923127810-27812
ORF7b19F19del1delttCtt-88127810-27812
ORF7b19F19YnonsyntTctAc77127810-27812
ORF7b19F19del2deltTCt--44127810-27812
ORF7b19F19DnonsynTTcGAc33127810-27812
ORF7b19F19EnonsynTTCGAA22127810-27812
ORF7b19F19XnonsyntTCtAA22127810-27812
ORF7b19F19WnonsyntTCtGG11127810-27812

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b19F19LTtcCtc18531907All0.000354
ORF7b19F19LttCttA501907All0.00001
ORF7b19F19LttCttG31907All0.000001
ORF7b19F19LTtCCtT11907All0
ORF7b19F19LTtcCtc14951495AY.1030.009283
ORF7b19F19FttCttT763763All0.000146
ORF7b19F19FttCttT392392B.1.1.70.000351
ORF7b19F19delTTC---169169All0.000032
ORF7b19F19StTctCc154159All0.000029
ORF7b19F19StTCtCT4159All0.000001
ORF7b19F19StTCtCA1159All0
ORF7b19F19VTtcGtc6872All0.000013
ORF7b19F19VTtCGtA472All0.000001
ORF7b19F19CtTctGc6465All0.000012
ORF7b19F19CtTCtGT165All0
ORF7b19F19LTtcCtc6262B.1.1.70.000056
ORF7b19F19delTTC---5858B.1.1.70.000052
ORF7b19F19delTTC---5656AY.40.000087
ORF7b19F19CtTctGc5252B.1.1.70.000047
ORF7b19F19FttCttT4040AY.40.000062
ORF7b19F19StTctCc3636B.1.1770.000474
ORF7b19F19LTtcCtc2034AY.40.000031
ORF7b19F19LttCttA1434AY.40.000022
ORF7b19F19LTtcCtc3333B.1.621.10.016692
ORF7b19F19FttCttT3030B.1.2430.002088
ORF7b19F19FttCttT2929B.1.617.20.000109
ORF7b19F19ITtcAtc2426All0.000005
ORF7b19F19ITtCAtT226All0
ORF7b19F19StTctCc2626B.1.1.860.928571
ORF7b19F19LTtcCtc2526B.1.617.20.000094
ORF7b19F19LttCttA126B.1.617.20.000004
ORF7b19F19LTtcCtc2626C.36.3.10.070652
ORF7b19F19FttCttT2525B.1.10.000454
ORF7b19F19VTtcGtc2121B.1.1.5190.000834
ORF7b19F19LTtcCtc1719B.1.20.00015
ORF7b19F19LttCttG119B.1.20.000009
ORF7b19F19LttCttA119B.1.20.000009
ORF7b19F19LTtcCtc1818B.1.177.600.003932
ORF7b19F19LTtcCtc1818B.1.177.820.008592
ORF7b19F19FttCttT1717P.10.000268
ORF7b19F19FttCttT1616A.180.8
ORF7b19F19FttCttT1616AY.250.000096
ORF7b19F19LTtcCtc1616B.1.10.00029
ORF7b19F19FttCttT1616B.1.1.5190.000635
ORF7b19F19LTtcCtc1515B.1.1.3330.016146
ORF7b19F19FttCttT1313B.1.20.000114
ORF7b19F19StTctCc1012B.1.1.70.000009
ORF7b19F19StTCtCT212B.1.1.70.000002
ORF7b19F19FttCttT1212B.1.177.600.002621
ORF7b19F19FttCttT1111B.10.000101
ORF7b19F19LTtcCtc510AY.430.000022
ORF7b19F19LttCttA510AY.430.000022
ORF7b19F19FttCttT1010AY.440.000061
ORF7b19F19LTtcCtc610B.10.000055
ORF7b19F19LttCttA310B.10.000027
ORF7b19F19LttCttG110B.10.000009
ORF7b19F19StTctCc1010B.1.617.20.000038
ORF7b19F19VTtcGtc99AY.1030.000056
ORF7b19F19VTtcGtc99B.1.1.70.000008
ORF7b19F19FttCttT99B.1.5260.000212
ORF7b19F19del1ttCtt-88All0.000002
ORF7b19F19delTTC---88AY.290.000126
ORF7b19F19ITtcAtc88AY.40.000012
ORF7b19F19FttCttT88B.1.2210.000568
ORF7b19F19YtTctAc77All0.000001
ORF7b19F19LTtcCtc77AY.60.000288
ORF7b19F19FttCttT77AY.640.004167
ORF7b19F19LTtcCtc77B.1.258.180.7
ORF7b19F19LTtcCtc77B.1.5260.000165
ORF7b19F19FttCttT77B.1.5760.006346
ORF7b19F19FttCttT77Q.80.001154
ORF7b19F19VTtCGtA460.222222
ORF7b19F19VTtcGtc260.111111
ORF7b19F19LttCttA56AY.1020.000133
ORF7b19F19LTtcCtc16AY.1020.000027
ORF7b19F19StTctCc66AY.40.000009
ORF7b19F19FttCttT66AY.430.000027
ORF7b19F19LTtcCtc66AY.440.000037
ORF7b19F19FttCttT66B.1.1600.000187
ORF7b19F19FttCttT66B.1.5250.000679
ORF7b19F19LttCttA56B.1.6370.000365
ORF7b19F19LTtcCtc16B.1.6370.000073
ORF7b19F19FttCttT550.277778
ORF7b19F19LttCttA350.166667
ORF7b19F19LTtCCtT150.055556
ORF7b19F19LTtcCtc150.055556
ORF7b19F19LTtcCtc55AY.160.001898
ORF7b19F19LTtcCtc45AY.250.000024
ORF7b19F19LttCttA15AY.250.000006
ORF7b19F19StTctCc55AY.290.000079
ORF7b19F19StTctCc55AY.440.00003
ORF7b19F19delTTC---55B.1.10.000091
ORF7b19F19LTtcCtc55B.1.2430.000348
ORF7b19F19ITtcAtc240.111111
ORF7b19F19ITtCAtT240.111111
ORF7b19F19del2tTCt--44All0.000001
ORF7b19F19FttCttT44AY.1110.000733
ORF7b19F19StTctCc44AY.1170.000338
ORF7b19F19StTctCc44B.10.000037
ORF7b19F19delTTC---44B.1.1.2140.000222
ORF7b19F19del2tTCt--44B.1.1.70.000004
ORF7b19F19VTtcGtc44B.1.1770.000053
ORF7b19F19VTtcGtc44B.1.20.000035
ORF7b19F19ITtcAtc44B.1.4700.005618
ORF7b19F19StTCtCA130.055556
ORF7b19F19StTctCc130.055556
ORF7b19F19StTCtCT130.055556
ORF7b19F19DTTcGAc33All0.000001
ORF7b19F19delTTC---33AY.1180.000188
ORF7b19F19del1ttCtt-33AY.250.000018
ORF7b19F19StTctCc33AY.250.000018
ORF7b19F19ITtcAtc33AY.390.000074
ORF7b19F19FttCttT33AY.750.000168
ORF7b19F19delTTC---33B.10.000027
ORF7b19F19VTtcGtc33B.1.10.000054
ORF7b19F19FttCttT33B.1.1.330.001263
ORF7b19F19YtTctAc33B.1.1.70.000003
ORF7b19F19LTtcCtc33B.1.130.007126
ORF7b19F19CtTctGc33B.1.20.000026
ORF7b19F19VTtcGtc33B.1.2400.000647
ORF7b19F19LTtcCtc33B.1.2580.0002
ORF7b19F19StTctCc33B.1.5960.000261
ORF7b19F19LTtcCtc33B.60.00273
ORF7b19F19StTctCc33P.10.000047
ORF7b19F19VTtcGtc33P.1.70.000958
ORF7b19F19XtTCtAA220.111111
ORF7b19F19DTTcGAc220.111111
ORF7b19F19YtTctAc220.111111
ORF7b19F19ETTCGAA220.111111
ORF7b19F19VTtcGtc22A.2.40.006734
ORF7b19F19ETTCGAA22All0
ORF7b19F19XtTCtAA22All0
ORF7b19F19FttCttT22AY.1020.000053
ORF7b19F19FttCttT22AY.1030.000012
ORF7b19F19LTtcCtc22AY.1170.000169
ORF7b19F19FttCttT22AY.1200.000074
ORF7b19F19FttCttT22AY.1210.000271
ORF7b19F19StTctCc22AY.30.00002
ORF7b19F19StTctCc22AY.420.00008
ORF7b19F19delTTC---22AY.430.000009
ORF7b19F19CtTctGc22AY.430.000009
ORF7b19F19CtTctGc22AY.440.000012
ORF7b19F19FttCttT22AY.5.40.000553
ORF7b19F19LTtcCtc22AY.730.001331
ORF7b19F19LttCttA22AY.790.002421
ORF7b19F19LttCttA12B0.000128
ORF7b19F19LTtcCtc12B0.000128
ORF7b19F19StTctCc22B.1.10.000036
ORF7b19F19StTctCc22B.1.1.2840.000215
ORF7b19F19StTctCc22B.1.1.5180.012658
ORF7b19F19delTTC---22B.1.1.5190.000079
ORF7b19F19ITtcAtc22B.1.1.70.000002
ORF7b19F19LTtcCtc22B.1.1110.00235
ORF7b19F19FttCttT22B.1.1770.000026
ORF7b19F19LTtcCtc12B.1.1770.000013
ORF7b19F19LttCttA12B.1.1770.000013
ORF7b19F19FttCttT22B.1.177.650.001331
ORF7b19F19StTctCc22B.1.20.000018
ORF7b19F19delTTC---22B.1.20.000018
ORF7b19F19LTtcCtc22B.1.2400.000431
ORF7b19F19ITtcAtc22B.1.2430.000139
ORF7b19F19CtTctGc22B.1.3510.000059
ORF7b19F19delTTC---22B.1.360.000292
ORF7b19F19FttCttT22B.1.36.170.000988
ORF7b19F19FttCttT22B.1.4270.000101
ORF7b19F19StTctCc22B.1.4290.000047
ORF7b19F19FttCttT22C.140.008658
ORF7b19F19LTtcCtc22D.20.00015
ORF7b19F19LTtcCtc22P.10.000032
ORF7b19F19del1ttCtt-22P.1.140.000096
ORF7b19F19LTtcCtc22P.20.000373
ORF7b19F19LttCttA11A0.000387
ORF7b19F19delTTC---11A.10.000282
ORF7b19F19FttCttT11A.210.00277
ORF7b19F19StTctCc11A.23.10.000704
ORF7b19F19LttCttA11AD.20.000219
ORF7b19F19WtTCtGG11All0
ORF7b19F19VTtcGtc11AT.10.005128
ORF7b19F19StTctCc11AY.1000.000046
ORF7b19F19FttCttT11AY.1000.000046
ORF7b19F19delTTC---11AY.1010.00049
ORF7b19F19StTctCc11AY.1020.000027
ORF7b19F19FttCttT11AY.1060.000335
ORF7b19F19delTTC---11AY.1080.001103
ORF7b19F19LTtcCtc11AY.1090.00074
ORF7b19F19StTctCc11AY.1140.000231
ORF7b19F19del1ttCtt-11AY.1190.000035
ORF7b19F19VTtcGtc11AY.1190.000035
ORF7b19F19LTtcCtc11AY.1190.000035
ORF7b19F19YtTctAc11AY.1200.000037
ORF7b19F19FttCttT11AY.130.000161
ORF7b19F19FttCttT11AY.140.000088
ORF7b19F19VTtcGtc11AY.140.000088
ORF7b19F19StTctCc11AY.16.10.00047
ORF7b19F19StTctCc11AY.23.10.000417
ORF7b19F19FttCttT11AY.240.000431
ORF7b19F19VTtcGtc11AY.250.000006
ORF7b19F19delTTC---11AY.250.000006
ORF7b19F19delTTC---11AY.260.000028
ORF7b19F19LTtcCtc11AY.270.000065
ORF7b19F19FttCttT11AY.290.000016
ORF7b19F19delTTC---11AY.29.10.000221
ORF7b19F19FttCttT11AY.30.00001
ORF7b19F19LTtcCtc11AY.30.00001
ORF7b19F19FttCttT11AY.3.10.000085
ORF7b19F19CtTctGc11AY.330.000067
ORF7b19F19FttCttT11AY.360.000148
ORF7b19F19StTctCc11AY.390.000025
ORF7b19F19StTCtCT11AY.39.10.00004
ORF7b19F19LTtcCtc11AY.39.10.00004
ORF7b19F19FttCttT11AY.39.10.00004
ORF7b19F19delTTC---11AY.39.10.00004
ORF7b19F19CtTctGc11AY.40.000002
ORF7b19F19VTtcGtc11AY.40.000002
ORF7b19F19delTTC---11AY.4.20.000022
ORF7b19F19StTctCc11AY.430.000004
ORF7b19F19del1ttCtt-11AY.440.000006
ORF7b19F19FttCttT11AY.460.000104
ORF7b19F19FttCttT11AY.46.60.000072
ORF7b19F19FttCttT11AY.470.000031
ORF7b19F19StTctCc11AY.470.000031
ORF7b19F19LTtcCtc11AY.470.000031
ORF7b19F19StTctCc11AY.50.000021
ORF7b19F19FttCttT11AY.50.000021
ORF7b19F19LTtcCtc11AY.50.000021
ORF7b19F19LttCttA11AY.520.000814
ORF7b19F19delTTC---11AY.530.000288
ORF7b19F19StTctCc11AY.540.000095
ORF7b19F19LTtcCtc11AY.640.000595
ORF7b19F19LTtcCtc11AY.690.000187
ORF7b19F19FttCttT11AY.7.10.000113
ORF7b19F19DTTcGAc11AY.740.000116
ORF7b19F19VTtcGtc11AY.740.000116
ORF7b19F19YtTctAc11AY.740.000116
ORF7b19F19LTtcCtc11AY.750.000056
ORF7b19F19ITtcAtc11AY.980.000079
ORF7b19F19FttCttT11AY.980.000079
ORF7b19F19LTtcCtc11AY.98.10.000048
ORF7b19F19delTTC---11AY.98.10.000048
ORF7b19F19delTTC---11AZ.20.000821
ORF7b19F19FttCttT11B0.000128
ORF7b19F19WtTCtGG11B.10.000009
ORF7b19F19LTtcCtc11B.1.1.1410.002012
ORF7b19F19FttCttT11B.1.1.1610.003534
ORF7b19F19delTTC---11B.1.1.2650.003155
ORF7b19F19StTctCc11B.1.1.280.000311
ORF7b19F19LTtcCtc11B.1.1.3110.000358
ORF7b19F19StTctCc11B.1.1.3480.000796
ORF7b19F19FttCttT11B.1.1.4200.001006
ORF7b19F19LTtcCtc11B.1.1.4320.001266
ORF7b19F19LTtcCtc11B.1.1.5250.005464
ORF7b19F19del1ttCtt-11B.1.1.70.000001
ORF7b19F19LTtcCtc11B.1.1.700.000341
ORF7b19F19LTtcCtc11B.1.1600.000031
ORF7b19F19LTtcCtc11B.1.160.220.006757
ORF7b19F19LTtcCtc11B.1.1640.014925
ORF7b19F19delTTC---11B.1.1770.000013
ORF7b19F19FttCttT11B.1.177.440.000519
ORF7b19F19LttCttG11B.1.177.460.000918
ORF7b19F19CtTCtGT11B.1.177.630.002703
ORF7b19F19VTtcGtc11B.1.177.730.000566
ORF7b19F19StTctCc11B.1.177.810.000189
ORF7b19F19LTtcCtc11B.1.2010.005682
ORF7b19F19FttCttT11B.1.2060.000816
ORF7b19F19FttCttT11B.1.230.006061
ORF7b19F19delTTC---11B.1.2340.000132
ORF7b19F19FttCttT11B.1.2340.000132
ORF7b19F19FttCttT11B.1.2580.000067
ORF7b19F19FttCttT11B.1.258.170.000104
ORF7b19F19LTtcCtc11B.1.2650.001271
ORF7b19F19FttCttT11B.1.3260.007576
ORF7b19F19StTctCc11B.1.3360.002439
ORF7b19F19LTtcCtc11B.1.3380.008621
ORF7b19F19StTctCc11B.1.3430.020833
ORF7b19F19delTTC---11B.1.3490.000715
ORF7b19F19LttCttA11B.1.3490.000715
ORF7b19F19LTtcCtc11B.1.3510.00003
ORF7b19F19StTctCc11B.1.360.000146
ORF7b19F19FttCttT11B.1.360.000146
ORF7b19F19FttCttT11B.1.36.180.00042
ORF7b19F19LTtcCtc11B.1.36.280.005747
ORF7b19F19CtTctGc11B.1.36.290.000517
ORF7b19F19FttCttT11B.1.36.290.000517
ORF7b19F19ITtcAtc11B.1.36.290.000517
ORF7b19F19StTctCc11B.1.3960.000706
ORF7b19F19FttCttT11B.1.4000.000429
ORF7b19F19LttCttA11B.1.4270.00005
ORF7b19F19FttCttT11B.1.4290.000024
ORF7b19F19LttCttA11B.1.4290.000024
ORF7b19F19delTTC---11B.1.4290.000024
ORF7b19F19FttCttT11B.1.4560.003268
ORF7b19F19StTctCc11B.1.4590.004082
ORF7b19F19delTTC---11B.1.4680.005714
ORF7b19F19FttCttT11B.1.4680.005714
ORF7b19F19FttCttT11B.1.4740.001901
ORF7b19F19delTTC---11B.1.5820.000491
ORF7b19F19delTTC---11B.1.5950.000261
ORF7b19F19delTTC---11B.1.617.20.000004
ORF7b19F19VTtcGtc11B.1.617.20.000004
ORF7b19F19LTtcCtc11B.1.6210.000089
ORF7b19F19LttCttA11B.1.6230.000536
ORF7b19F19delTTC---11B.1.6300.005236
ORF7b19F19FttCttT11B.1.6360.006711
ORF7b19F19LTtcCtc11B.230.002924
ORF7b19F19ITtcAtc11B.30.000831
ORF7b19F19FttCttT11C.10.002392
ORF7b19F19FttCttT11C.370.000116
ORF7b19F19LTtcCtc11C.370.000116
ORF7b19F19LttCttA11C.390.018868
ORF7b19F19StTctCc11D.20.000075
ORF7b19F19FttCttT11D.20.000075
ORF7b19F19StTctCc11L.30.003546
ORF7b19F19delTTC---11P.10.000016
ORF7b19F19FttCttT11P.1.120.000484
ORF7b19F19delTTC---11P.1.140.000048
ORF7b19F19StTctCc11P.1.140.000048
ORF7b19F19FttCttT11P.1.140.000048
ORF7b19F19delTTC---11P.1.150.000232
ORF7b19F19StTctCc11P.50.013699
ORF7b19F19FttCttT11Q.10.000126
ORF7b19F19FttCttT11Q.30.000145
ORF7b19F19StTctCc11Q.40.000455
ORF7b19F19FttCttT11Q.40.000455
ORF7b19F19LTtcCtc11Q.40.000455
ORF7b19F19FttCttT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.