CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 18 & Codon = ctG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b18L18LsynctActG39969760.24424427807-27809

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b18L18LctActG9763996All0.000187
ORF7b18L18LctActG1909AY.40.000002
ORF7b18L18LctActG888890B.1.3510.026397
ORF7b18L18LctActG14515B.1.1.70.000013
ORF7b18L18LctActG3307B.1.10.000054
ORF7b18L18LctActG1138AY.430.000004
ORF7b18L18LctActG795B.10.000064
ORF7b18L18LctActG257B.1.20.000018
ORF7b18L18LctActG247B.1.617.20.000008
ORF7b18L18LctActG129B.1.1770.000013
ORF7b18L18LctActG2021AY.490.063898
ORF7b18L18LctActG317AY.390.000074
ORF7b18L18LctActG415AY.440.000024
ORF7b18L18LctActG212AY.1170.000169
ORF7b18L18LctActG110AY.50.000021
ORF7b18L18LctActG29AY.30.00002
ORF7b18L18LctActG66B.1.5240.008439
ORF7b18L18LctActG13B.1.4290.000024
ORF7b18L18LctActG33C.160.003181
ORF7b18L18LctActG12A0.000387
ORF7b18L18LctActG12AY.750.000056
ORF7b18L18LctActG12B0.000128
ORF7b18L18LctActG22B.1.177.730.001133
ORF7b18L18LctActG22B.1.3690.00057
ORF7b18L18LctActG11AY.880.000884
ORF7b18L18LctActG11AY.99.20.000092
ORF7b18L18LctActG11B.1.1.630.000386
ORF7b18L18LctActG11B.1.351.20.000303
ORF7b18L18LctActG11B.1.6200.000946
ORF7b18L18LctActG11B.1.6360.006711
ORF7b18L18LctActG11D.20.000075
ORF7b18L18LctActG11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.