CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 18 & Codon = Tta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b18L18LsynCtaTta399620710.51826827807-27809

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b18L18LCtaTta20713996All0.000396
ORF7b18L18LCtaTta89909AY.40.000139
ORF7b18L18LCtaTta2890B.1.3510.000059
ORF7b18L18LCtaTta488515B.1.1.70.000437
ORF7b18L18LCtaTta294307B.1.10.005333
ORF7b18L18LCtaTta136138AY.430.000603
ORF7b18L18LCtaTta120120B.1.1.2140.006655
ORF7b18L18LCtaTta7395B.10.000669
ORF7b18L18LCtaTta8888AY.180.888889
ORF7b18L18LCtaTta7272AY.160.027335
ORF7b18L18LCtaTta5557B.1.20.000484
ORF7b18L18LCtaTta5454B.1.1.1710.198529
ORF7b18L18LCtaTta4350AY.1030.000267
ORF7b18L18LCtaTta2947B.1.617.20.000109
ORF7b18L18LCtaTta3434B.1.5960.002963
ORF7b18L18LCtaTta2729B.1.1770.000356
ORF7b18L18LCtaTta2727AY.290.000426
ORF7b18L18LCtaTta2326B.1.2210.001634
ORF7b18L18LCtaTta2525AY.250.00015
ORF7b18L18LCtaTta2121B.1.5760.019039
ORF7b18L18LCtaTta2020AY.330.001336
ORF7b18L18LCtaTta1718AY.700.003545
ORF7b18L18LCtaTta1818B.1.1.2220.003672
ORF7b18L18LCtaTta1818B.1.1600.000561
ORF7b18L18LCtaTta1618P.10.000252
ORF7b18L18LCtaTta1117AY.390.000272
ORF7b18L18LCtaTta7150.388889
ORF7b18L18LCtaTta1115AY.440.000067
ORF7b18L18LCtaTta1213B.1.4270.000606
ORF7b18L18LCtaTta812AY.1170.000676
ORF7b18L18LCtaTta1212B.1.1.1890.018154
ORF7b18L18LCtaTta611AY.39.10.000238
ORF7b18L18LCtaTta1111B.1.1.5190.000437
ORF7b18L18LCtaTta1111P.1.60.021401
ORF7b18L18LCtaTta910AY.50.000186
ORF7b18L18LCtaTta49AY.30.00004
ORF7b18L18LCtaTta88B.1.2220.013536
ORF7b18L18LCtaTta77B.1.177.820.003341
ORF7b18L18LCtaTta57P.1.140.000239
ORF7b18L18LCtaTta66B.1.360.000875
ORF7b18L18LCtaTta35B.1.1.3060.001315
ORF7b18L18LCtaTta55B.1.177.210.000382
ORF7b18L18LCtaTta55B.1.2580.000333
ORF7b18L18LCtaTta44AT.10.020513
ORF7b18L18LCtaTta44AY.320.00213
ORF7b18L18LCtaTta44B.1.1.2610.034483
ORF7b18L18LCtaTta24B.1.1.280.000622
ORF7b18L18LCtaTta34B.1.2430.000209
ORF7b18L18LCtaTta44C.370.000464
ORF7b18L18LCtaTta44L.30.014184
ORF7b18L18LCtaTta44P.20.000747
ORF7b18L18LCtaTta33AY.1000.000138
ORF7b18L18LCtaTta23AY.230.000139
ORF7b18L18LCtaTta23AY.260.000057
ORF7b18L18LCtaTta33B.1.1.2200.005576
ORF7b18L18LCtaTta33B.1.2400.000647
ORF7b18L18LCtaTta23B.1.36.100.009569
ORF7b18L18LCtaTta13B.1.4290.000024
ORF7b18L18LCtaTta33B.1.6090.001438
ORF7b18L18LCtaTta33B.1.617.10.000387
ORF7b18L18LCtaTta12A0.000387
ORF7b18L18LCtaTta22A.20.001324
ORF7b18L18LCtaTta22AU.10.002532
ORF7b18L18LCtaTta22AY.100.00106
ORF7b18L18LCtaTta22AY.1160.000574
ORF7b18L18LCtaTta22AY.20.000712
ORF7b18L18LCtaTta22AY.3.10.000171
ORF7b18L18LCtaTta22AY.420.00008
ORF7b18L18LCtaTta12AY.470.000031
ORF7b18L18LCtaTta22AY.510.001818
ORF7b18L18LCtaTta22AY.60.000082
ORF7b18L18LCtaTta12AY.750.000056
ORF7b18L18LCtaTta12B0.000128
ORF7b18L18LCtaTta22B.1.1.2160.001781
ORF7b18L18LCtaTta22B.1.1.5210.010695
ORF7b18L18LCtaTta22B.1.177.860.000367
ORF7b18L18LCtaTta22B.1.4080.00738
ORF7b18L18LCtaTta22B.1.5260.000047
ORF7b18L18LCtaTta22B.1.5750.000607
ORF7b18L18LCtaTta12B.1.6210.000089
ORF7b18L18LCtaTta12C.360.000911
ORF7b18L18LCtaTta22P.50.027397
ORF7b18L18LCtaTta22Q.10.000253
ORF7b18L18LCtaTta22Q.30.00029
ORF7b18L18LCtaTta12Q.80.000165
ORF7b18L18LCtaTta11A.10.000282
ORF7b18L18LCtaTta11A.23.10.000704
ORF7b18L18LCtaTta11AY.1020.000027
ORF7b18L18LCtaTta11AY.1190.000035
ORF7b18L18LCtaTta11AY.410.000294
ORF7b18L18LCtaTta11AY.450.000122
ORF7b18L18LCtaTta11AY.670.000464
ORF7b18L18LCtaTta11AY.98.10.000048
ORF7b18L18LCtaTta11B.1.1.1530.001095
ORF7b18L18LCtaTta11B.1.1.1740.003378
ORF7b18L18LCtaTta11B.1.1.1760.000439
ORF7b18L18LCtaTta11B.1.1.1980.001468
ORF7b18L18LCtaTta11B.1.1.2310.003096
ORF7b18L18LCtaTta11B.1.1.2770.000759
ORF7b18L18LCtaTta11B.1.1.3170.000412
ORF7b18L18LCtaTta11B.1.1.330.000421
ORF7b18L18LCtaTta11B.1.1.3560.008547
ORF7b18L18LCtaTta11B.1.1.3720.000689
ORF7b18L18LCtaTta11B.1.1.3890.006061
ORF7b18L18LCtaTta11B.1.1.3970.002252
ORF7b18L18LCtaTta11B.1.1.4160.000905
ORF7b18L18LCtaTta11B.1.1.4190.007407
ORF7b18L18LCtaTta11B.1.1.500.000679
ORF7b18L18LCtaTta11B.1.1.710.006061
ORF7b18L18LCtaTta11B.1.110.30.000718
ORF7b18L18LCtaTta11B.1.177.460.000918
ORF7b18L18LCtaTta11B.1.177.480.003125
ORF7b18L18LCtaTta11B.1.177.600.000218
ORF7b18L18LCtaTta11B.1.177.810.000189
ORF7b18L18LCtaTta11B.1.2390.001221
ORF7b18L18LCtaTta11B.1.243.10.022222
ORF7b18L18LCtaTta11B.1.258.170.000104
ORF7b18L18LCtaTta11B.1.36.170.000494
ORF7b18L18LCtaTta11B.1.36.180.00042
ORF7b18L18LCtaTta11B.1.4000.000429
ORF7b18L18LCtaTta11B.1.4090.000781
ORF7b18L18LCtaTta11B.1.5050.004386
ORF7b18L18LCtaTta11B.1.5090.000866
ORF7b18L18LCtaTta11B.1.5170.000427
ORF7b18L18LCtaTta11B.1.5540.004405
ORF7b18L18LCtaTta11B.1.5600.00463
ORF7b18L18LCtaTta11B.1.621.10.000506
ORF7b18L18LCtaTta11B.1.6340.003425
ORF7b18L18LCtaTta11B.1.6370.000073
ORF7b18L18LCtaTta11B.1.780.008547
ORF7b18L18LCtaTta11B.60.00091
ORF7b18L18LCtaTta11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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