CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 17 | L17L | syn | Ctg | Ttg | 6341 | 5321 | 0.839142 | 27804-27806 | |
ORF7b | 17 | L17L | syn | ctG | ctT | 6341 | 798 | 0.125848 | 27804-27806 | |
ORF7b | 17 | L17L | syn | ctG | ctA | 6341 | 219 | 0.0345371 | 27804-27806 | |
ORF7b | 17 | L17L | syn | ctG | ctC | 6341 | 3 | 0.000473111 | 27804-27806 | |
ORF7b | 17 | L17del | del | CTG | --- | 160 | 160 | 1 | 27804-27806 | |
ORF7b | 17 | L17P | nonsyn | cTg | cCg | 125 | 118 | 0.944 | 27804-27806 | |
ORF7b | 17 | L17P | nonsyn | cTG | cCT | 125 | 5 | 0.04 | 27804-27806 | |
ORF7b | 17 | L17P | nonsyn | cTG | cCA | 125 | 2 | 0.016 | 27804-27806 | |
ORF7b | 17 | L17M | nonsyn | Ctg | Atg | 90 | 90 | 1 | 27804-27806 | |
ORF7b | 17 | L17Q | nonsyn | cTg | cAg | 40 | 38 | 0.95 | 27804-27806 | |
ORF7b | 17 | L17Q | nonsyn | cTG | cAA | 40 | 2 | 0.05 | 27804-27806 | |
ORF7b | 17 | L17del1 | del | Ctg | -tg | 26 | 24 | 0.923077 | 27804-27806 | |
ORF7b | 17 | L17del1 | del | ctG | ct- | 26 | 2 | 0.0769231 | 27804-27806 | |
ORF7b | 17 | L17V | nonsyn | Ctg | Gtg | 20 | 20 | 1 | 27804-27806 | |
ORF7b | 17 | L17F | nonsyn | CtG | TtT | 10 | 10 | 1 | 27804-27806 | |
ORF7b | 17 | L17S | nonsyn | CTg | TCg | 8 | 4 | 0.5 | 27804-27806 | |
ORF7b | 17 | L17S | nonsyn | CTG | TCT | 8 | 4 | 0.5 | 27804-27806 | |
ORF7b | 17 | L17T | nonsyn | CTg | ACg | 6 | 3 | 0.5 | 27804-27806 | |
ORF7b | 17 | L17T | nonsyn | CTG | ACT | 6 | 3 | 0.5 | 27804-27806 | |
ORF7b | 17 | L17R | nonsyn | cTg | cGg | 5 | 3 | 0.6 | 27804-27806 | |
ORF7b | 17 | L17R | nonsyn | cTG | cGA | 5 | 2 | 0.4 | 27804-27806 | |
ORF7b | 17 | L17I | nonsyn | CtG | AtT | 3 | 3 | 1 | 27804-27806 | |
ORF7b | 17 | L17H | nonsyn | cTG | cAT | 2 | 2 | 1 | 27804-27806 | |
ORF7b | 17 | L17X | nonsyn | CTg | TAg | 2 | 2 | 1 | 27804-27806 | |
ORF7b | 17 | L17Y | nonsyn | CTG | TAT | 2 | 2 | 1 | 27804-27806 | |
ORF7b | 17 | L17N | nonsyn | CTG | AAT | 1 | 1 | 1 | 27804-27806 | |
ORF7b | 17 | L17K | nonsyn | CTg | AAg | 1 | 1 | 1 | 27804-27806 | |
ORF7b | 17 | L17del2 | del | CTG | --N | 1 | 1 | 1 | 27804-27806 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 17 | L17L | Ctg | Ttg | 5321 | 6341 | All | 0.001018 |
ORF7b | 17 | L17L | ctG | ctT | 798 | 6341 | All | 0.000153 |
ORF7b | 17 | L17L | ctG | ctA | 219 | 6341 | All | 0.000042 |
ORF7b | 17 | L17L | ctG | ctC | 3 | 6341 | All | 0.000001 |
ORF7b | 17 | L17L | Ctg | Ttg | 1184 | 1340 | B.1.1.7 | 0.00106 |
ORF7b | 17 | L17L | ctG | ctT | 152 | 1340 | B.1.1.7 | 0.000136 |
ORF7b | 17 | L17L | ctG | ctA | 3 | 1340 | B.1.1.7 | 0.000003 |
ORF7b | 17 | L17L | ctG | ctC | 1 | 1340 | B.1.1.7 | 0.000001 |
ORF7b | 17 | L17L | Ctg | Ttg | 1023 | 1023 | B.1.367 | 0.810618 |
ORF7b | 17 | L17L | Ctg | Ttg | 427 | 435 | B.1.2 | 0.00376 |
ORF7b | 17 | L17L | ctG | ctT | 7 | 435 | B.1.2 | 0.000062 |
ORF7b | 17 | L17L | ctG | ctC | 1 | 435 | B.1.2 | 0.000009 |
ORF7b | 17 | L17L | Ctg | Ttg | 333 | 336 | B.1.526 | 0.007827 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 336 | B.1.526 | 0.000071 |
ORF7b | 17 | L17L | Ctg | Ttg | 164 | 305 | B.1 | 0.001502 |
ORF7b | 17 | L17L | ctG | ctA | 115 | 305 | B.1 | 0.001053 |
ORF7b | 17 | L17L | ctG | ctT | 26 | 305 | B.1 | 0.000238 |
ORF7b | 17 | L17L | Ctg | Ttg | 146 | 213 | AY.4 | 0.000227 |
ORF7b | 17 | L17L | ctG | ctT | 66 | 213 | AY.4 | 0.000103 |
ORF7b | 17 | L17L | ctG | ctA | 1 | 213 | AY.4 | 0.000002 |
ORF7b | 17 | L17L | Ctg | Ttg | 191 | 195 | AY.25 | 0.001149 |
ORF7b | 17 | L17L | ctG | ctT | 4 | 195 | AY.25 | 0.000024 |
ORF7b | 17 | L17L | Ctg | Ttg | 81 | 188 | B.1.1 | 0.001469 |
ORF7b | 17 | L17L | ctG | ctT | 60 | 188 | B.1.1 | 0.001088 |
ORF7b | 17 | L17L | ctG | ctA | 47 | 188 | B.1.1 | 0.000853 |
ORF7b | 17 | L17del | CTG | --- | 160 | 160 | All | 0.000031 |
ORF7b | 17 | L17L | Ctg | Ttg | 151 | 151 | B.1.597 | 0.699074 |
ORF7b | 17 | L17L | Ctg | Ttg | 137 | 137 | P.2 | 0.025569 |
ORF7b | 17 | L17P | cTg | cCg | 118 | 125 | All | 0.000023 |
ORF7b | 17 | L17P | cTG | cCT | 5 | 125 | All | 0.000001 |
ORF7b | 17 | L17P | cTG | cCA | 2 | 125 | All | 0 |
ORF7b | 17 | L17L | ctG | ctT | 99 | 99 | B.1.36.12 | 0.951923 |
ORF7b | 17 | L17L | Ctg | Ttg | 67 | 97 | B.1.177 | 0.000882 |
ORF7b | 17 | L17L | ctG | ctT | 30 | 97 | B.1.177 | 0.000395 |
ORF7b | 17 | L17L | Ctg | Ttg | 58 | 96 | P.1 | 0.000914 |
ORF7b | 17 | L17L | ctG | ctT | 38 | 96 | P.1 | 0.000599 |
ORF7b | 17 | L17L | Ctg | Ttg | 93 | 93 | C.11 | 0.989362 |
ORF7b | 17 | L17M | Ctg | Atg | 90 | 90 | All | 0.000017 |
ORF7b | 17 | L17L | Ctg | Ttg | 81 | 83 | B.1.258 | 0.00539 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 83 | B.1.258 | 0.000133 |
ORF7b | 17 | L17L | Ctg | Ttg | 66 | 79 | B.1.617.2 | 0.000249 |
ORF7b | 17 | L17L | ctG | ctT | 13 | 79 | B.1.617.2 | 0.000049 |
ORF7b | 17 | L17L | Ctg | Ttg | 74 | 74 | AY.24 | 0.031897 |
ORF7b | 17 | L17L | ctG | ctT | 24 | 64 | B.1.1.519 | 0.000953 |
ORF7b | 17 | L17L | ctG | ctA | 23 | 64 | B.1.1.519 | 0.000913 |
ORF7b | 17 | L17L | Ctg | Ttg | 17 | 64 | B.1.1.519 | 0.000675 |
ORF7b | 17 | L17P | cTg | cCg | 58 | 58 | B.1.1.7 | 0.000052 |
ORF7b | 17 | L17del | CTG | --- | 57 | 57 | AY.4 | 0.000089 |
ORF7b | 17 | L17L | Ctg | Ttg | 41 | 55 | AY.44 | 0.00025 |
ORF7b | 17 | L17L | ctG | ctT | 14 | 55 | AY.44 | 0.000085 |
ORF7b | 17 | L17L | Ctg | Ttg | 55 | 55 | B.1.36.9 | 0.176849 |
ORF7b | 17 | L17M | Ctg | Atg | 45 | 45 | B.1.241 | 0.036526 |
ORF7b | 17 | L17L | Ctg | Ttg | 41 | 41 | AY.13 | 0.0066 |
ORF7b | 17 | L17Q | cTg | cAg | 38 | 40 | All | 0.000007 |
ORF7b | 17 | L17Q | cTG | cAA | 2 | 40 | All | 0 |
ORF7b | 17 | L17L | Ctg | Ttg | 20 | 30 | AY.103 | 0.000124 |
ORF7b | 17 | L17L | ctG | ctT | 7 | 30 | AY.103 | 0.000043 |
ORF7b | 17 | L17L | ctG | ctA | 3 | 30 | AY.103 | 0.000019 |
ORF7b | 17 | L17L | Ctg | Ttg | 28 | 28 | AY.7.2 | 0.01566 |
ORF7b | 17 | L17Q | cTg | cAg | 28 | 28 | B.1.2 | 0.000247 |
ORF7b | 17 | L17L | Ctg | Ttg | 27 | 28 | B.1.36 | 0.003939 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 28 | B.1.36 | 0.000146 |
ORF7b | 17 | L17L | Ctg | Ttg | 27 | 28 | B.1.621 | 0.00239 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 28 | B.1.621 | 0.000089 |
ORF7b | 17 | L17L | Ctg | Ttg | 27 | 27 | AY.47 | 0.00084 |
ORF7b | 17 | L17del1 | Ctg | -tg | 24 | 26 | All | 0.000005 |
ORF7b | 17 | L17del1 | ctG | ct- | 2 | 26 | All | 0 |
ORF7b | 17 | L17L | Ctg | Ttg | 22 | 25 | AY.3 | 0.000219 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 25 | AY.3 | 0.00003 |
ORF7b | 17 | L17L | Ctg | Ttg | 24 | 25 | C.37 | 0.002786 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 25 | C.37 | 0.000116 |
ORF7b | 17 | L17del | CTG | --- | 24 | 24 | B.1.1.7 | 0.000021 |
ORF7b | 17 | L17L | Ctg | Ttg | 18 | 23 | B.1.160 | 0.000561 |
ORF7b | 17 | L17L | ctG | ctT | 5 | 23 | B.1.160 | 0.000156 |
ORF7b | 17 | L17L | Ctg | Ttg | 23 | 23 | B.1.36.18 | 0.009664 |
ORF7b | 17 | L17L | Ctg | Ttg | 11 | 23 | B.1.427 | 0.000555 |
ORF7b | 17 | L17L | ctG | ctA | 7 | 23 | B.1.427 | 0.000353 |
ORF7b | 17 | L17L | ctG | ctT | 5 | 23 | B.1.427 | 0.000252 |
ORF7b | 17 | L17L | ctG | ctT | 20 | 21 | A.2.4 | 0.06734 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 21 | A.2.4 | 0.003367 |
ORF7b | 17 | L17V | Ctg | Gtg | 20 | 20 | All | 0.000004 |
ORF7b | 17 | L17M | Ctg | Atg | 20 | 20 | AY.6 | 0.000823 |
ORF7b | 17 | L17L | Ctg | Ttg | 14 | 20 | B.1.1.28 | 0.004357 |
ORF7b | 17 | L17L | ctG | ctT | 6 | 20 | B.1.1.28 | 0.001867 |
ORF7b | 17 | L17L | Ctg | Ttg | 15 | 19 | B.1.1.222 | 0.00306 |
ORF7b | 17 | L17L | ctG | ctT | 4 | 19 | B.1.1.222 | 0.000816 |
ORF7b | 17 | L17L | Ctg | Ttg | 10 | 18 | AY.43 | 0.000044 |
ORF7b | 17 | L17L | ctG | ctT | 8 | 18 | AY.43 | 0.000035 |
ORF7b | 17 | L17L | Ctg | Ttg | 17 | 18 | B.1.1.214 | 0.000943 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 18 | B.1.1.214 | 0.000055 |
ORF7b | 17 | L17L | Ctg | Ttg | 18 | 18 | B.1.177.36 | 0.290323 |
ORF7b | 17 | L17P | cTg | cCg | 18 | 18 | B.1.221 | 0.001279 |
ORF7b | 17 | L17L | Ctg | Ttg | 17 | 18 | B.1.517 | 0.007259 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 18 | B.1.517 | 0.000427 |
ORF7b | 17 | L17L | Ctg | Ttg | 15 | 17 | B.1.221 | 0.001065 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 17 | B.1.221 | 0.000142 |
ORF7b | 17 | L17L | Ctg | Ttg | 17 | 17 | B.1.596 | 0.001481 |
ORF7b | 17 | L17L | Ctg | Ttg | 15 | 17 | B.1.617.1 | 0.001934 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 17 | B.1.617.1 | 0.000258 |
ORF7b | 17 | L17L | ctG | ctT | 16 | 16 | A.2.5.1 | 0.076923 |
ORF7b | 17 | L17del1 | Ctg | -tg | 16 | 16 | B.1.1.7 | 0.000014 |
ORF7b | 17 | L17L | Ctg | Ttg | 14 | 16 | B.1.351 | 0.000416 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 16 | B.1.351 | 0.000059 |
ORF7b | 17 | L17L | Ctg | Ttg | 15 | 15 | P.1.14 | 0.000717 |
ORF7b | 17 | L17L | ctG | ctT | 7 | 14 | 0.388889 | |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 14 | 0.277778 | |
ORF7b | 17 | L17L | ctG | ctA | 2 | 14 | 0.111111 | |
ORF7b | 17 | L17L | Ctg | Ttg | 10 | 14 | AY.29 | 0.000158 |
ORF7b | 17 | L17L | ctG | ctT | 4 | 14 | AY.29 | 0.000063 |
ORF7b | 17 | L17L | Ctg | Ttg | 12 | 14 | B.1.243 | 0.000835 |
ORF7b | 17 | L17L | ctG | ctA | 1 | 14 | B.1.243 | 0.00007 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 14 | B.1.243 | 0.00007 |
ORF7b | 17 | L17L | ctG | ctT | 13 | 13 | B.18 | 0.565217 |
ORF7b | 17 | L17P | cTg | cCg | 6 | 12 | 0.333333 | |
ORF7b | 17 | L17P | cTG | cCT | 4 | 12 | 0.222222 | |
ORF7b | 17 | L17P | cTG | cCA | 2 | 12 | 0.111111 | |
ORF7b | 17 | L17L | ctG | ctT | 12 | 12 | A.18 | 0.6 |
ORF7b | 17 | L17L | Ctg | Ttg | 12 | 12 | B.1.110.3 | 0.008621 |
ORF7b | 17 | L17L | Ctg | Ttg | 12 | 12 | B.1.638 | 0.631579 |
ORF7b | 17 | L17L | Ctg | Ttg | 8 | 11 | B.1.1.33 | 0.003367 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 11 | B.1.1.33 | 0.001263 |
ORF7b | 17 | L17L | Ctg | Ttg | 11 | 11 | B.1.36.29 | 0.005691 |
ORF7b | 17 | L17L | ctG | ctT | 10 | 11 | B.1.469 | 0.036101 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 11 | B.1.469 | 0.00361 |
ORF7b | 17 | L17F | CtG | TtT | 10 | 10 | All | 0.000002 |
ORF7b | 17 | L17L | Ctg | Ttg | 10 | 10 | AY.120 | 0.000372 |
ORF7b | 17 | L17L | ctG | ctT | 5 | 10 | AY.26 | 0.000142 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 10 | AY.26 | 0.000142 |
ORF7b | 17 | L17L | Ctg | Ttg | 10 | 10 | AY.56 | 0.016051 |
ORF7b | 17 | L17L | Ctg | Ttg | 7 | 10 | AY.61 | 0.000733 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 10 | AY.61 | 0.000314 |
ORF7b | 17 | L17L | Ctg | Ttg | 10 | 10 | B.1.1.186 | 0.034364 |
ORF7b | 17 | L17L | ctG | ctT | 9 | 9 | AY.118 | 0.000564 |
ORF7b | 17 | L17L | ctG | ctT | 9 | 9 | AY.94 | 0.003984 |
ORF7b | 17 | L17del | CTG | --- | 9 | 9 | B.1.160 | 0.000281 |
ORF7b | 17 | L17L | Ctg | Ttg | 9 | 9 | B.40 | 0.003279 |
ORF7b | 17 | L17S | CTG | TCT | 4 | 8 | All | 0.000001 |
ORF7b | 17 | L17S | CTg | TCg | 4 | 8 | All | 0.000001 |
ORF7b | 17 | L17L | Ctg | Ttg | 8 | 8 | AY.100 | 0.000368 |
ORF7b | 17 | L17del | CTG | --- | 8 | 8 | AY.29 | 0.000126 |
ORF7b | 17 | L17L | Ctg | Ttg | 8 | 8 | AY.62 | 0.003486 |
ORF7b | 17 | L17L | Ctg | Ttg | 8 | 8 | N.6 | 0.056738 |
ORF7b | 17 | L17L | Ctg | Ttg | 8 | 8 | W.4 | 0.010811 |
ORF7b | 17 | L17L | ctG | ctT | 5 | 7 | B.1.1.25 | 0.002843 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 7 | B.1.1.25 | 0.001137 |
ORF7b | 17 | L17del | CTG | --- | 7 | 7 | B.1.1.519 | 0.000278 |
ORF7b | 17 | L17L | Ctg | Ttg | 7 | 7 | B.1.232 | 0.003761 |
ORF7b | 17 | L17Q | cTg | cAg | 4 | 6 | 0.222222 | |
ORF7b | 17 | L17T | CTg | ACg | 3 | 6 | 0.166667 | |
ORF7b | 17 | L17T | CTG | ACT | 3 | 6 | 0.166667 | |
ORF7b | 17 | L17Q | cTG | cAA | 2 | 6 | 0.111111 | |
ORF7b | 17 | L17T | CTG | ACT | 3 | 6 | All | 0.000001 |
ORF7b | 17 | L17T | CTg | ACg | 3 | 6 | All | 0.000001 |
ORF7b | 17 | L17L | ctG | ctT | 4 | 6 | AY.5 | 0.000083 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 6 | AY.5 | 0.000041 |
ORF7b | 17 | L17L | Ctg | Ttg | 6 | 6 | AY.63 | 0.002321 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 6 | B | 0.000639 |
ORF7b | 17 | L17L | ctG | ctA | 1 | 6 | B | 0.000128 |
ORF7b | 17 | L17del | CTG | --- | 6 | 6 | B.1 | 0.000055 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 6 | B.1.1.218 | 0.038462 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 6 | B.1.1.218 | 0.007692 |
ORF7b | 17 | L17L | Ctg | Ttg | 6 | 6 | B.1.1.428 | 0.056604 |
ORF7b | 17 | L17V | Ctg | Gtg | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 6 | B.1.234 | 0.00066 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 6 | B.1.234 | 0.000132 |
ORF7b | 17 | L17L | Ctg | Ttg | 6 | 6 | B.1.438.1 | 0.000644 |
ORF7b | 17 | L17F | CtG | TtT | 5 | 5 | 0.277778 | |
ORF7b | 17 | L17L | ctG | ctT | 5 | 5 | A | 0.001935 |
ORF7b | 17 | L17R | cTg | cGg | 3 | 5 | All | 0.000001 |
ORF7b | 17 | L17R | cTG | cGA | 2 | 5 | All | 0 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 5 | AY.102 | 0.000106 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 5 | AY.102 | 0.000027 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 5 | AY.119 | 0.000106 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 5 | AY.119 | 0.000071 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 5 | AY.27 | 0.000259 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 5 | AY.27 | 0.000065 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 5 | AY.39.1 | 0.000198 |
ORF7b | 17 | L17P | cTg | cCg | 5 | 5 | AY.6 | 0.000206 |
ORF7b | 17 | L17V | Ctg | Gtg | 5 | 5 | B.1.1 | 0.000091 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 5 | B.1.1.216 | 0.002671 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 5 | B.1.1.216 | 0.001781 |
ORF7b | 17 | L17P | cTg | cCg | 5 | 5 | B.1.1.25 | 0.002843 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 5 | B.1.1.63 | 0.001157 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 5 | B.1.1.63 | 0.000772 |
ORF7b | 17 | L17L | ctG | ctA | 5 | 5 | B.1.1.98 | 0.092593 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 5 | B.1.177.4 | 0.000633 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 5 | B.1.177.4 | 0.000422 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 5 | B.1.258.17 | 0.00052 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 5 | B.1.429 | 0.000118 |
ORF7b | 17 | L17L | Ctg | Ttg | 5 | 5 | D.2 | 0.000375 |
ORF7b | 17 | L17P | cTg | cCg | 5 | 5 | P.1.1 | 0.001588 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 5 | P.1.10 | 0.000808 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 5 | P.1.10 | 0.000539 |
ORF7b | 17 | L17S | CTg | TCg | 2 | 4 | 0.111111 | |
ORF7b | 17 | L17S | CTG | TCT | 2 | 4 | 0.111111 | |
ORF7b | 17 | L17R | cTG | cGA | 2 | 4 | 0.111111 | |
ORF7b | 17 | L17R | cTg | cGg | 2 | 4 | 0.111111 | |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | AY.46.4 | 0.000658 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 4 | AY.6 | 0.000082 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 4 | AY.6 | 0.000082 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | AY.67 | 0.001857 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | AY.98.1 | 0.000194 |
ORF7b | 17 | L17del | CTG | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF7b | 17 | L17del | CTG | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 4 | B.1.1.294 | 0.002532 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 4 | B.1.1.294 | 0.002532 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 4 | B.1.1.306 | 0.000877 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 4 | B.1.1.306 | 0.000877 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | B.1.1.317 | 0.001647 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 4 | B.1.1.318 | 0.000604 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 4 | B.1.1.318 | 0.000604 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | B.1.1.348 | 0.003185 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 4 | B.1.1.434 | 0.000697 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 4 | B.1.1.434 | 0.000697 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | B.1.1.523 | 0.00625 |
ORF7b | 17 | L17M | Ctg | Atg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | B.1.146 | 0.016949 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | B.1.177.21 | 0.000306 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | B.1.177.52 | 0.00703 |
ORF7b | 17 | L17L | Ctg | Ttg | 4 | 4 | B.1.466.2 | 0.001565 |
ORF7b | 17 | L17I | CtG | AtT | 3 | 3 | 0.166667 | |
ORF7b | 17 | L17M | Ctg | Atg | 3 | 3 | 0.166667 | |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 3 | AE.8 | 0.000978 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 3 | AE.8 | 0.000489 |
ORF7b | 17 | L17I | CtG | AtT | 3 | 3 | All | 0.000001 |
ORF7b | 17 | L17del | CTG | --- | 3 | 3 | AY.118 | 0.000188 |
ORF7b | 17 | L17M | Ctg | Atg | 3 | 3 | AY.25 | 0.000018 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | AY.34 | 0.000291 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | AY.4.2 | 0.000065 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 3 | AY.75.1 | 0.000361 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 3 | AY.75.1 | 0.00018 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | AY.85 | 0.001282 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | AY.9.2 | 0.00011 |
ORF7b | 17 | L17L | ctG | ctT | 3 | 3 | B.1.1.27 | 0.016949 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.139 | 0.002199 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.177.58 | 0.003995 |
ORF7b | 17 | L17M | Ctg | Atg | 3 | 3 | B.1.177.73 | 0.001699 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.177.8 | 0.002257 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.177.81 | 0.000568 |
ORF7b | 17 | L17L | ctG | ctA | 3 | 3 | B.1.177.82 | 0.001432 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.177.83 | 0.004444 |
ORF7b | 17 | L17P | cTg | cCg | 3 | 3 | B.1.2 | 0.000026 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 3 | B.1.311 | 0.000549 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 3 | B.1.311 | 0.000275 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.349 | 0.002144 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.36.31 | 0.005254 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 3 | B.1.369 | 0.00057 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 3 | B.1.369 | 0.000285 |
ORF7b | 17 | L17P | cTg | cCg | 3 | 3 | B.1.466.2 | 0.001174 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.470 | 0.004213 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | B.1.509 | 0.002597 |
ORF7b | 17 | L17L | ctG | ctA | 2 | 3 | B.1.609 | 0.000959 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 3 | B.1.609 | 0.000479 |
ORF7b | 17 | L17del | CTG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7b | 17 | L17L | ctG | ctA | 3 | 3 | B.1.636 | 0.020134 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | C.16 | 0.003181 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 3 | P.1.13 | 0.001797 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 3 | P.1.13 | 0.000898 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 3 | Q.3 | 0.00029 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 3 | Q.3 | 0.000145 |
ORF7b | 17 | L17L | Ctg | Ttg | 3 | 3 | Q.7 | 0.003333 |
ORF7b | 17 | L17Y | CTG | TAT | 2 | 2 | 0.111111 | |
ORF7b | 17 | L17H | cTG | cAT | 2 | 2 | 0.111111 | |
ORF7b | 17 | L17X | CTg | TAg | 2 | 2 | 0.111111 | |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | A | 0.000774 |
ORF7b | 17 | L17L | ctG | ctA | 1 | 2 | A.1 | 0.000282 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 2 | A.1 | 0.000282 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | A.2.5 | 0.000998 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | A.29 | 0.010638 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | A.3 | 0.004193 |
ORF7b | 17 | L17X | CTg | TAg | 2 | 2 | All | 0 |
ORF7b | 17 | L17Y | CTG | TAT | 2 | 2 | All | 0 |
ORF7b | 17 | L17H | cTG | cAT | 2 | 2 | All | 0 |
ORF7b | 17 | L17M | Ctg | Atg | 2 | 2 | AY.116 | 0.000574 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 2 | AY.20 | 0.000039 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 2 | AY.20 | 0.000039 |
ORF7b | 17 | L17M | Ctg | Atg | 2 | 2 | AY.33 | 0.000134 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | AY.38 | 0.000999 |
ORF7b | 17 | L17P | cTg | cCg | 2 | 2 | AY.4 | 0.000003 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 2 | AY.4.4 | 0.000818 |
ORF7b | 17 | L17del1 | Ctg | -tg | 2 | 2 | AY.43 | 0.000009 |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | AY.99.2 | 0.000184 |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | B | 0.000256 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.1.153 | 0.002191 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.1.204 | 0.006079 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 2 | B.1.1.322 | 0.017544 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 2 | B.1.1.337 | 0.007194 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 2 | B.1.1.385 | 0.004464 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 2 | B.1.1.385 | 0.004464 |
ORF7b | 17 | L17S | CTg | TCg | 1 | 2 | B.1.1.385 | 0.004464 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 2 | B.1.1.385 | 0.004464 |
ORF7b | 17 | L17S | CTG | TCT | 1 | 2 | B.1.1.385 | 0.004464 |
ORF7b | 17 | L17P | cTG | cCT | 1 | 2 | B.1.1.385 | 0.004464 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.1.39 | 0.001019 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 2 | B.1.1.413 | 0.006897 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 2 | B.1.1.413 | 0.006897 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.1.417 | 0.005405 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 2 | B.1.128 | 0.000635 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 2 | B.1.128 | 0.000635 |
ORF7b | 17 | L17P | cTg | cCg | 2 | 2 | B.1.160 | 0.000062 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.160.26 | 0.004843 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.177.10 | 0.001756 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.177.32 | 0.002699 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 2 | B.1.177.6 | 0.000977 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 2 | B.1.177.6 | 0.000977 |
ORF7b | 17 | L17L | ctG | ctT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF7b | 17 | L17del1 | Ctg | -tg | 2 | 2 | B.1.2 | 0.000018 |
ORF7b | 17 | L17F | CtG | TtT | 2 | 2 | B.1.221 | 0.000142 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.279 | 0.001027 |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.36.1 | 0.002281 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.36.22 | 0.002415 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.36.8 | 0.002 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.366 | 0.009756 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.389 | 0.002004 |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.525 | 0.000226 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 2 | B.1.588 | 0.00091 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 2 | B.1.588 | 0.00091 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.620 | 0.001892 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | B.1.637 | 0.000146 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | C.4 | 0.02 |
ORF7b | 17 | L17del | CTG | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | P.1.7 | 0.000639 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | Q.4 | 0.00091 |
ORF7b | 17 | L17L | Ctg | Ttg | 2 | 2 | Q.8 | 0.00033 |
ORF7b | 17 | L17N | CTG | AAT | 1 | 1 | 0.055556 | |
ORF7b | 17 | L17K | CTg | AAg | 1 | 1 | 0.055556 | |
ORF7b | 17 | L17R | cTg | cGg | 1 | 1 | A | 0.000387 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | A.19 | 0.009434 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | A.21 | 0.00277 |
ORF7b | 17 | L17del2 | CTG | --N | 1 | 1 | All | 0 |
ORF7b | 17 | L17K | CTg | AAg | 1 | 1 | All | 0 |
ORF7b | 17 | L17N | CTG | AAT | 1 | 1 | All | 0 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AM.4 | 0.003571 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AU.1 | 0.001266 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | AU.2 | 0.002421 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.1 | 0.000396 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.10 | 0.00053 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.116.1 | 0.000311 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.14 | 0.000088 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.16 | 0.00038 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.16.1 | 0.00047 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 17 | L17del1 | ctG | ct- | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.3.1 | 0.000085 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.30 | 0.000396 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.33 | 0.000067 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.39.2 | 0.001541 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | AY.4 | 0.000002 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | AY.4.4 | 0.000409 |
ORF7b | 17 | L17L | ctG | ctC | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.45 | 0.000122 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.5.4 | 0.000277 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | AY.54 | 0.000095 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.64 | 0.000595 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | AY.71 | 0.000475 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.74 | 0.000116 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.75 | 0.000056 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | AY.77 | 0.001127 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.84 | 0.000437 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.9.1 | 0.000084 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.90 | 0.000684 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AY.99 | 0.001049 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | AZ.1 | 0.000867 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7b | 17 | L17del2 | CTG | --N | 1 | 1 | B.1 | 0.000009 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | B.1 | 0.000009 |
ORF7b | 17 | L17S | CTG | TCT | 1 | 1 | B.1 | 0.000009 |
ORF7b | 17 | L17del1 | Ctg | -tg | 1 | 1 | B.1 | 0.000009 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | B.1 | 0.000009 |
ORF7b | 17 | L17F | CtG | TtT | 1 | 1 | B.1 | 0.000009 |
ORF7b | 17 | L17F | CtG | TtT | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.118 | 0.010204 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.12 | 0.007463 |
ORF7b | 17 | L17L | ctG | ctA | 1 | 1 | B.1.1.161 | 0.003534 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.201 | 0.02439 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.226 | 0.005814 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.228 | 0.003049 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.272 | 0.005208 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.273 | 0.006757 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.289 | 0.002083 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.304 | 0.002809 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.354 | 0.004386 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7b | 17 | L17del1 | ctG | ct- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7b | 17 | L17F | CtG | TtT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.44 | 0.00241 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.46 | 0.004367 |
ORF7b | 17 | L17L | ctG | ctA | 1 | 1 | B.1.1.464 | 0.001473 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.517 | 0.006803 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF7b | 17 | L17Q | cTg | cAg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.111 | 0.001175 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | B.1.139 | 0.000733 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.147 | 0.000756 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.157 | 0.002985 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.160.27 | 0.015152 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.169 | 0.014925 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.16 | 0.000664 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | B.1.177.56 | 0.000668 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.56 | 0.000668 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.69 | 0.001484 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.22 | 0.001318 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.222 | 0.001692 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.225 | 0.015385 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | B.1.240 | 0.000216 |
ORF7b | 17 | L17Q | cTg | cAg | 1 | 1 | B.1.258 | 0.000067 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.298 | 0.002114 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.313 | 0.006579 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.319 | 0.003049 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.324 | 0.001605 |
ORF7b | 17 | L17Q | cTg | cAg | 1 | 1 | B.1.351 | 0.00003 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.356 | 0.001727 |
ORF7b | 17 | L17del1 | Ctg | -tg | 1 | 1 | B.1.36 | 0.000146 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.36.2 | 0.010753 |
ORF7b | 17 | L17del1 | Ctg | -tg | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.36.38 | 0.001642 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.361 | 0.001289 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.391 | 0.001127 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.397 | 0.004854 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.399 | 0.001934 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | B.1.400 | 0.000429 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.404 | 0.001302 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 17 | L17S | CTg | TCg | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.422 | 0.000812 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.433 | 0.003195 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.434 | 0.052632 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.445 | 0.011765 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.462 | 0.007246 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.503 | 0.002488 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.567 | 0.003333 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.575.1 | 0.002439 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.579 | 0.011236 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.595.4 | 0.007299 |
ORF7b | 17 | L17Q | cTg | cAg | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.603 | 0.010638 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.625 | 0.002353 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.627 | 0.00202 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 17 | L17P | cTg | cCg | 1 | 1 | B.1.637 | 0.000073 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.3 | 0.000831 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.3.1 | 0.001658 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | B.35 | 0.007812 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | B.6 | 0.00091 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | C.11 | 0.010638 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | C.35 | 0.000774 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | C.37.1 | 0.002618 |
ORF7b | 17 | L17L | ctG | ctT | 1 | 1 | C.8 | 0.004464 |
ORF7b | 17 | L17Q | cTg | cAg | 1 | 1 | D.2 | 0.000075 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | N.5 | 0.001767 |
ORF7b | 17 | L17Q | cTg | cAg | 1 | 1 | P.1 | 0.000016 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | P.1 | 0.000016 |
ORF7b | 17 | L17del1 | Ctg | -tg | 1 | 1 | P.1 | 0.000016 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | P.1 | 0.000016 |
ORF7b | 17 | L17M | Ctg | Atg | 1 | 1 | P.1 | 0.000016 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 17 | L17del | CTG | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | P.1.15 | 0.000232 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | P.1.6 | 0.001946 |
ORF7b | 17 | L17V | Ctg | Gtg | 1 | 1 | R.1 | 0.00009 |
ORF7b | 17 | L17L | Ctg | Ttg | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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