CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 15 & Codon = ---
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF7b | 15 | A15del | del | GCC | --- | 796 | 796 | 1 | 27798-27800 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF7b | 15 | A15del | GCC | --- | 796 | 796 | All | 0.000152 |
| ORF7b | 15 | A15del | GCC | --- | 124 | 124 | AY.4 | 0.000193 |
| ORF7b | 15 | A15del | GCC | --- | 112 | 112 | B.1.1.7 | 0.0001 |
| ORF7b | 15 | A15del | GCC | --- | 94 | 94 | B.1.36 | 0.013715 |
| ORF7b | 15 | A15del | GCC | --- | 42 | 42 | AY.47 | 0.001306 |
| ORF7b | 15 | A15del | GCC | --- | 35 | 35 | B.1.221 | 0.002486 |
| ORF7b | 15 | A15del | GCC | --- | 34 | 34 | B.1.526 | 0.000799 |
| ORF7b | 15 | A15del | GCC | --- | 28 | 28 | AY.9.1 | 0.002344 |
| ORF7b | 15 | A15del | GCC | --- | 27 | 27 | B.1.1 | 0.00049 |
| ORF7b | 15 | A15del | GCC | --- | 23 | 23 | AY.25 | 0.000138 |
| ORF7b | 15 | A15del | GCC | --- | 18 | 18 | B.1.617.2 | 0.000068 |
| ORF7b | 15 | A15del | GCC | --- | 15 | 15 | AY.9 | 0.001014 |
| ORF7b | 15 | A15del | GCC | --- | 14 | 14 | P.1 | 0.000221 |
| ORF7b | 15 | A15del | GCC | --- | 13 | 13 | AY.44 | 0.000079 |
| ORF7b | 15 | A15del | GCC | --- | 12 | 12 | B.1.2 | 0.000106 |
| ORF7b | 15 | A15del | GCC | --- | 11 | 11 | B.1 | 0.000101 |
| ORF7b | 15 | A15del | GCC | --- | 10 | 10 | AY.103 | 0.000062 |
| ORF7b | 15 | A15del | GCC | --- | 10 | 10 | AY.20 | 0.000389 |
| ORF7b | 15 | A15del | GCC | --- | 8 | 8 | AY.29 | 0.000126 |
| ORF7b | 15 | A15del | GCC | --- | 8 | 8 | AY.43 | 0.000035 |
| ORF7b | 15 | A15del | GCC | --- | 8 | 8 | B.1.1.519 | 0.000318 |
| ORF7b | 15 | A15del | GCC | --- | 7 | 7 | B.1.177 | 0.000092 |
| ORF7b | 15 | A15del | GCC | --- | 7 | 7 | B.1.424 | 0.056452 |
| ORF7b | 15 | A15del | GCC | --- | 6 | 6 | B.1.429 | 0.000141 |
| ORF7b | 15 | A15del | GCC | --- | 5 | 5 | AY.26 | 0.000142 |
| ORF7b | 15 | A15del | GCC | --- | 5 | 5 | B.1.621.1 | 0.002529 |
| ORF7b | 15 | A15del | GCC | --- | 4 | 4 | AY.120 | 0.000149 |
| ORF7b | 15 | A15del | GCC | --- | 4 | 4 | AY.3 | 0.00004 |
| ORF7b | 15 | A15del | GCC | --- | 4 | 4 | AY.66 | 0.004278 |
| ORF7b | 15 | A15del | GCC | --- | 4 | 4 | B.1.1.214 | 0.000222 |
| ORF7b | 15 | A15del | GCC | --- | 4 | 4 | B.1.177.86 | 0.000734 |
| ORF7b | 15 | A15del | GCC | --- | 4 | 4 | Q.8 | 0.00066 |
| ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.118 | 0.000188 |
| ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.121 | 0.000406 |
| ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.39 | 0.000074 |
| ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.98 | 0.000237 |
| ORF7b | 15 | A15del | GCC | --- | 3 | 3 | B.1.1.159 | 0.014019 |
| ORF7b | 15 | A15del | GCC | --- | 3 | 3 | B.1.351 | 0.000089 |
| ORF7b | 15 | A15del | GCC | --- | 3 | 3 | B.1.568 | 0.003333 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | A | 0.000774 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.100 | 0.000092 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.102 | 0.000053 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.119 | 0.000071 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.120.2 | 0.002571 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.39.1 | 0.000079 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.4.2 | 0.000043 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.46.6 | 0.000144 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.75 | 0.000112 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.98.1 | 0.000097 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.1.25 | 0.001137 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.177.2 | 0.009091 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.36.33 | 0.015152 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.367 | 0.001585 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.416 | 0.002538 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.6 | 0.00182 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | P.1.14 | 0.000096 |
| ORF7b | 15 | A15del | GCC | --- | 2 | 2 | P.1.15 | 0.000465 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | A.1 | 0.000282 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | A.2.2 | 0.001689 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.108 | 0.001103 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.111 | 0.000183 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.117 | 0.000085 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.16 | 0.00038 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.2 | 0.000356 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.29.1 | 0.000221 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.34 | 0.000097 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.46.3 | 0.000934 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.5 | 0.000021 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.53 | 0.000288 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.70 | 0.000209 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.74 | 0.000116 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.9.2 | 0.000037 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AZ.2 | 0.000821 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B | 0.000128 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.1.253 | 0.002506 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.1.265 | 0.003155 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.110.3 | 0.000718 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.160 | 0.000031 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.234 | 0.000132 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.243 | 0.00007 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.36.10 | 0.004785 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.36.22 | 0.001208 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.36.25 | 0.002208 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.370 | 0.008 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.427 | 0.00005 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.466.2 | 0.000391 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.468 | 0.005714 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.525 | 0.000113 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.556 | 0.007519 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.582 | 0.000491 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.596 | 0.000087 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.630 | 0.005236 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | N.5 | 0.001767 |
| ORF7b | 15 | A15del | GCC | --- | 1 | 1 | P.1.16 | 0.000374 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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