CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 15 | A15A | syn | gcC | gcA | 26763 | 25596 | 0.956395 | 27798-27800 | |
ORF7b | 15 | A15A | syn | gcC | gcT | 26763 | 1026 | 0.0383365 | 27798-27800 | |
ORF7b | 15 | A15A | syn | gcC | gcG | 26763 | 141 | 0.00526847 | 27798-27800 | |
ORF7b | 15 | A15S | nonsyn | Gcc | Tcc | 5143 | 4818 | 0.936807 | 27798-27800 | |
ORF7b | 15 | A15S | nonsyn | GcC | TcA | 5143 | 318 | 0.0618316 | 27798-27800 | |
ORF7b | 15 | A15S | nonsyn | GcC | TcT | 5143 | 6 | 0.00116663 | 27798-27800 | |
ORF7b | 15 | A15S | nonsyn | GCc | AGc | 5143 | 1 | 0.000194439 | 27798-27800 | |
ORF7b | 15 | A15del | del | GCC | --- | 796 | 796 | 1 | 27798-27800 | |
ORF7b | 15 | A15V | nonsyn | gCc | gTc | 223 | 212 | 0.950673 | 27798-27800 | |
ORF7b | 15 | A15V | nonsyn | gCC | gTT | 223 | 8 | 0.0358744 | 27798-27800 | |
ORF7b | 15 | A15V | nonsyn | gCC | gTA | 223 | 3 | 0.0134529 | 27798-27800 | |
ORF7b | 15 | A15T | nonsyn | Gcc | Acc | 186 | 178 | 0.956989 | 27798-27800 | |
ORF7b | 15 | A15T | nonsyn | GcC | AcA | 186 | 5 | 0.0268817 | 27798-27800 | |
ORF7b | 15 | A15T | nonsyn | GcC | AcT | 186 | 3 | 0.016129 | 27798-27800 | |
ORF7b | 15 | A15D | nonsyn | gCc | gAc | 33 | 33 | 1 | 27798-27800 | |
ORF7b | 15 | A15P | nonsyn | Gcc | Ccc | 31 | 30 | 0.967742 | 27798-27800 | |
ORF7b | 15 | A15P | nonsyn | GcC | CcT | 31 | 1 | 0.0322581 | 27798-27800 | |
ORF7b | 15 | A15del1 | del | Gcc | -cc | 20 | 18 | 0.9 | 27798-27800 | |
ORF7b | 15 | A15del1 | del | GCC | -NN | 20 | 2 | 0.1 | 27798-27800 | |
ORF7b | 15 | A15G | nonsyn | gCc | gGc | 15 | 11 | 0.733333 | 27798-27800 | |
ORF7b | 15 | A15G | nonsyn | gCC | gGA | 15 | 3 | 0.2 | 27798-27800 | |
ORF7b | 15 | A15G | nonsyn | gCC | gGT | 15 | 1 | 0.0666667 | 27798-27800 | |
ORF7b | 15 | A15F | nonsyn | GCc | TTc | 10 | 7 | 0.7 | 27798-27800 | |
ORF7b | 15 | A15I | nonsyn | GCc | ATc | 10 | 5 | 0.5 | 27798-27800 | |
ORF7b | 15 | A15I | nonsyn | GCC | ATT | 10 | 4 | 0.4 | 27798-27800 | |
ORF7b | 15 | A15F | nonsyn | GCC | TTT | 10 | 3 | 0.3 | 27798-27800 | |
ORF7b | 15 | A15I | nonsyn | GCC | ATA | 10 | 1 | 0.1 | 27798-27800 | |
ORF7b | 15 | A15del2 | del | GCc | --c | 8 | 8 | 1 | 27798-27800 | |
ORF7b | 15 | A15C | nonsyn | GCc | TGc | 8 | 7 | 0.875 | 27798-27800 | |
ORF7b | 15 | A15C | nonsyn | GCC | TGT | 8 | 1 | 0.125 | 27798-27800 | |
ORF7b | 15 | A15N | nonsyn | GCc | AAc | 3 | 3 | 1 | 27798-27800 | |
ORF7b | 15 | A15L | nonsyn | GCC | TTA | 3 | 2 | 0.666667 | 27798-27800 | |
ORF7b | 15 | A15L | nonsyn | GCc | CTc | 3 | 1 | 0.333333 | 27798-27800 | |
ORF7b | 15 | A15X | nonsyn | GCC | TGA | 2 | 2 | 1 | 27798-27800 | |
ORF7b | 15 | A15Y | nonsyn | GCc | TAc | 2 | 2 | 1 | 27798-27800 | |
ORF7b | 15 | A15E | nonsyn | gCC | gAA | 1 | 1 | 1 | 27798-27800 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 15 | A15A | gcC | gcA | 25596 | 26763 | All | 0.004896 |
ORF7b | 15 | A15A | gcC | gcT | 1026 | 26763 | All | 0.000196 |
ORF7b | 15 | A15A | gcC | gcG | 141 | 26763 | All | 0.000027 |
ORF7b | 15 | A15A | gcC | gcA | 10832 | 10833 | B.1.258 | 0.720836 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 10833 | B.1.258 | 0.000067 |
ORF7b | 15 | A15A | gcC | gcA | 8563 | 8563 | B.1.258.17 | 0.89031 |
ORF7b | 15 | A15S | Gcc | Tcc | 4818 | 5143 | All | 0.000921 |
ORF7b | 15 | A15S | GcC | TcA | 318 | 5143 | All | 0.000061 |
ORF7b | 15 | A15S | GcC | TcT | 6 | 5143 | All | 0.000001 |
ORF7b | 15 | A15S | GCc | AGc | 1 | 5143 | All | 0 |
ORF7b | 15 | A15A | gcC | gcA | 2351 | 2351 | B.1.258.11 | 0.931827 |
ORF7b | 15 | A15del | GCC | --- | 796 | 796 | All | 0.000152 |
ORF7b | 15 | A15A | gcC | gcA | 784 | 784 | B.1.258.14 | 0.768627 |
ORF7b | 15 | A15S | Gcc | Tcc | 724 | 725 | B.1.1 | 0.013134 |
ORF7b | 15 | A15S | GcC | TcA | 1 | 725 | B.1.1 | 0.000018 |
ORF7b | 15 | A15S | Gcc | Tcc | 698 | 698 | B.1.1.7 | 0.000625 |
ORF7b | 15 | A15A | gcC | gcA | 603 | 604 | B.1.258.16 | 0.986907 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 604 | B.1.258.16 | 0.001637 |
ORF7b | 15 | A15A | gcC | gcA | 483 | 483 | B.1.258.7 | 0.923518 |
ORF7b | 15 | A15A | gcC | gcT | 419 | 419 | AY.3 | 0.004168 |
ORF7b | 15 | A15A | gcC | gcA | 359 | 359 | B.1.258.22 | 0.957333 |
ORF7b | 15 | A15S | Gcc | Tcc | 327 | 340 | B.1 | 0.002995 |
ORF7b | 15 | A15S | GcC | TcA | 12 | 340 | B.1 | 0.00011 |
ORF7b | 15 | A15S | GcC | TcT | 1 | 340 | B.1 | 0.000009 |
ORF7b | 15 | A15S | Gcc | Tcc | 313 | 313 | AY.4 | 0.000487 |
ORF7b | 15 | A15S | Gcc | Tcc | 279 | 279 | B.1.1.368 | 0.861111 |
ORF7b | 15 | A15A | gcC | gcA | 270 | 270 | B.1.258.4 | 0.931034 |
ORF7b | 15 | A15A | gcC | gcA | 249 | 255 | B.1 | 0.002281 |
ORF7b | 15 | A15A | gcC | gcT | 6 | 255 | B.1 | 0.000055 |
ORF7b | 15 | A15S | Gcc | Tcc | 253 | 253 | B.1.36.31 | 0.443082 |
ORF7b | 15 | A15V | gCc | gTc | 212 | 223 | All | 0.000041 |
ORF7b | 15 | A15V | gCC | gTT | 8 | 223 | All | 0.000002 |
ORF7b | 15 | A15V | gCC | gTA | 3 | 223 | All | 0.000001 |
ORF7b | 15 | A15S | GcC | TcA | 200 | 200 | B.1.258.9 | 1 |
ORF7b | 15 | A15T | Gcc | Acc | 178 | 186 | All | 0.000034 |
ORF7b | 15 | A15T | GcC | AcA | 5 | 186 | All | 0.000001 |
ORF7b | 15 | A15T | GcC | AcT | 3 | 186 | All | 0.000001 |
ORF7b | 15 | A15S | Gcc | Tcc | 173 | 173 | B.1.617.2 | 0.000651 |
ORF7b | 15 | A15A | gcC | gcG | 107 | 148 | AY.4 | 0.000167 |
ORF7b | 15 | A15A | gcC | gcT | 39 | 148 | AY.4 | 0.000061 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 148 | AY.4 | 0.000003 |
ORF7b | 15 | A15S | Gcc | Tcc | 143 | 143 | B.1.427 | 0.007221 |
ORF7b | 15 | A15A | gcC | gcA | 139 | 139 | B.1.258.19 | 0.985816 |
ORF7b | 15 | A15S | Gcc | Tcc | 129 | 129 | B.1.429 | 0.003035 |
ORF7b | 15 | A15A | gcC | gcA | 128 | 128 | B.1.258.21 | 0.992248 |
ORF7b | 15 | A15del | GCC | --- | 124 | 124 | AY.4 | 0.000193 |
ORF7b | 15 | A15S | Gcc | Tcc | 120 | 121 | B.1.9.4 | 0.736196 |
ORF7b | 15 | A15S | GcC | TcT | 1 | 121 | B.1.9.4 | 0.006135 |
ORF7b | 15 | A15S | Gcc | Tcc | 114 | 114 | AY.25 | 0.000686 |
ORF7b | 15 | A15del | GCC | --- | 112 | 112 | B.1.1.7 | 0.0001 |
ORF7b | 15 | A15A | gcC | gcA | 104 | 104 | B.1.258.12 | 0.818898 |
ORF7b | 15 | A15S | GcC | TcA | 98 | 101 | B.1.258.11 | 0.038843 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 101 | B.1.258.11 | 0.001189 |
ORF7b | 15 | A15A | gcC | gcA | 100 | 100 | B.1.258.5 | 0.877193 |
ORF7b | 15 | A15S | Gcc | Tcc | 99 | 99 | AY.43 | 0.000439 |
ORF7b | 15 | A15del | GCC | --- | 94 | 94 | B.1.36 | 0.013715 |
ORF7b | 15 | A15S | Gcc | Tcc | 93 | 93 | B.1.2 | 0.000819 |
ORF7b | 15 | A15S | Gcc | Tcc | 87 | 87 | AY.102 | 0.002307 |
ORF7b | 15 | A15A | gcC | gcA | 87 | 87 | B.1.258.10 | 0.988636 |
ORF7b | 15 | A15A | gcC | gcT | 77 | 83 | B.1.617.2 | 0.00029 |
ORF7b | 15 | A15A | gcC | gcA | 5 | 83 | B.1.617.2 | 0.000019 |
ORF7b | 15 | A15A | gcC | gcG | 1 | 83 | B.1.617.2 | 0.000004 |
ORF7b | 15 | A15A | gcC | gcT | 63 | 74 | B.1.1.7 | 0.000056 |
ORF7b | 15 | A15A | gcC | gcA | 10 | 74 | B.1.1.7 | 0.000009 |
ORF7b | 15 | A15A | gcC | gcG | 1 | 74 | B.1.1.7 | 0.000001 |
ORF7b | 15 | A15A | gcC | gcT | 70 | 70 | B.1.526 | 0.001645 |
ORF7b | 15 | A15S | Gcc | Tcc | 59 | 59 | AY.26 | 0.00167 |
ORF7b | 15 | A15A | gcC | gcA | 59 | 59 | B.1.258.20 | 0.936508 |
ORF7b | 15 | A15A | gcC | gcA | 29 | 56 | B.1.177 | 0.000382 |
ORF7b | 15 | A15A | gcC | gcT | 27 | 56 | B.1.177 | 0.000356 |
ORF7b | 15 | A15S | Gcc | Tcc | 55 | 55 | B.1.36 | 0.008025 |
ORF7b | 15 | A15S | Gcc | Tcc | 52 | 53 | B.1.177 | 0.000685 |
ORF7b | 15 | A15S | GcC | TcT | 1 | 53 | B.1.177 | 0.000013 |
ORF7b | 15 | A15A | gcC | gcA | 51 | 51 | B.1.258.15 | 0.962264 |
ORF7b | 15 | A15S | Gcc | Tcc | 51 | 51 | B.1.526 | 0.001199 |
ORF7b | 15 | A15A | gcC | gcA | 49 | 49 | B.1.258.6 | 0.960784 |
ORF7b | 15 | A15A | gcC | gcG | 22 | 45 | AY.103 | 0.000137 |
ORF7b | 15 | A15A | gcC | gcT | 21 | 45 | AY.103 | 0.00013 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 45 | AY.103 | 0.000012 |
ORF7b | 15 | A15S | Gcc | Tcc | 45 | 45 | C.37 | 0.005223 |
ORF7b | 15 | A15del | GCC | --- | 42 | 42 | AY.47 | 0.001306 |
ORF7b | 15 | A15S | Gcc | Tcc | 41 | 41 | AY.44 | 0.00025 |
ORF7b | 15 | A15T | Gcc | Acc | 38 | 38 | B.1.1.7 | 0.000034 |
ORF7b | 15 | A15A | gcC | gcA | 33 | 38 | B.1.160 | 0.001029 |
ORF7b | 15 | A15A | gcC | gcT | 5 | 38 | B.1.160 | 0.000156 |
ORF7b | 15 | A15A | gcC | gcT | 37 | 38 | B.1.391 | 0.041714 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 38 | B.1.391 | 0.001127 |
ORF7b | 15 | A15S | Gcc | Tcc | 36 | 36 | B.1.1.317 | 0.014821 |
ORF7b | 15 | A15del | GCC | --- | 35 | 35 | B.1.221 | 0.002486 |
ORF7b | 15 | A15S | Gcc | Tcc | 34 | 34 | AY.103 | 0.000211 |
ORF7b | 15 | A15V | gCc | gTc | 34 | 34 | B.1.2 | 0.000299 |
ORF7b | 15 | A15del | GCC | --- | 34 | 34 | B.1.526 | 0.000799 |
ORF7b | 15 | A15D | gCc | gAc | 33 | 33 | All | 0.000006 |
ORF7b | 15 | A15T | Gcc | Acc | 33 | 33 | AY.4 | 0.000051 |
ORF7b | 15 | A15S | Gcc | Tcc | 32 | 32 | B.1.1.194 | 0.158416 |
ORF7b | 15 | A15S | Gcc | Tcc | 32 | 32 | P.1 | 0.000504 |
ORF7b | 15 | A15P | Gcc | Ccc | 30 | 31 | All | 0.000006 |
ORF7b | 15 | A15P | GcC | CcT | 1 | 31 | All | 0 |
ORF7b | 15 | A15S | Gcc | Tcc | 31 | 31 | B.1.243 | 0.002157 |
ORF7b | 15 | A15A | gcC | gcA | 31 | 31 | B.1.258.24 | 0.333333 |
ORF7b | 15 | A15V | gCc | gTc | 30 | 30 | AY.4 | 0.000047 |
ORF7b | 15 | A15A | gcC | gcA | 30 | 30 | B.1.258.23 | 0.714286 |
ORF7b | 15 | A15del | GCC | --- | 28 | 28 | AY.9.1 | 0.002344 |
ORF7b | 15 | A15V | gCc | gTc | 28 | 28 | B.1.1.7 | 0.000025 |
ORF7b | 15 | A15del | GCC | --- | 27 | 27 | B.1.1 | 0.00049 |
ORF7b | 15 | A15A | gcC | gcA | 21 | 25 | B.1.1 | 0.000381 |
ORF7b | 15 | A15A | gcC | gcT | 4 | 25 | B.1.1 | 0.000073 |
ORF7b | 15 | A15S | Gcc | Tcc | 24 | 24 | AY.9 | 0.001622 |
ORF7b | 15 | A15S | Gcc | Tcc | 23 | 24 | B.1.221 | 0.001634 |
ORF7b | 15 | A15S | GcC | TcT | 1 | 24 | B.1.221 | 0.000071 |
ORF7b | 15 | A15del | GCC | --- | 23 | 23 | AY.25 | 0.000138 |
ORF7b | 15 | A15S | Gcc | Tcc | 22 | 22 | AY.100 | 0.001012 |
ORF7b | 15 | A15S | Gcc | Tcc | 22 | 22 | B.1.177.73 | 0.012458 |
ORF7b | 15 | A15A | gcC | gcA | 17 | 22 | B.1.221 | 0.001208 |
ORF7b | 15 | A15A | gcC | gcT | 5 | 22 | B.1.221 | 0.000355 |
ORF7b | 15 | A15A | gcC | gcT | 21 | 21 | AY.44 | 0.000128 |
ORF7b | 15 | A15A | gcC | gcT | 21 | 21 | AY.46 | 0.002186 |
ORF7b | 15 | A15S | Gcc | Tcc | 21 | 21 | B.1.1.216 | 0.0187 |
ORF7b | 15 | A15V | gCc | gTc | 21 | 21 | B.1.351 | 0.000624 |
ORF7b | 15 | A15S | Gcc | Tcc | 21 | 21 | P.1.14 | 0.001004 |
ORF7b | 15 | A15del1 | Gcc | -cc | 18 | 20 | All | 0.000003 |
ORF7b | 15 | A15del1 | GCC | -NN | 2 | 20 | All | 0 |
ORF7b | 15 | A15A | gcC | gcA | 20 | 20 | AY.24 | 0.008621 |
ORF7b | 15 | A15S | Gcc | Tcc | 20 | 20 | AY.3 | 0.000199 |
ORF7b | 15 | A15A | gcC | gcA | 19 | 20 | B.1.609 | 0.009108 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 20 | B.1.609 | 0.000479 |
ORF7b | 15 | A15del | GCC | --- | 18 | 18 | B.1.617.2 | 0.000068 |
ORF7b | 15 | A15A | gcC | gcT | 16 | 16 | AY.34 | 0.001551 |
ORF7b | 15 | A15S | Gcc | Tcc | 16 | 16 | B.1.1.519 | 0.000635 |
ORF7b | 15 | A15G | gCc | gGc | 11 | 15 | All | 0.000002 |
ORF7b | 15 | A15G | gCC | gGA | 3 | 15 | All | 0.000001 |
ORF7b | 15 | A15G | gCC | gGT | 1 | 15 | All | 0 |
ORF7b | 15 | A15P | Gcc | Ccc | 15 | 15 | AY.103 | 0.000093 |
ORF7b | 15 | A15S | Gcc | Tcc | 15 | 15 | AY.39 | 0.000371 |
ORF7b | 15 | A15A | gcC | gcT | 12 | 15 | AY.43 | 0.000053 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 15 | AY.43 | 0.000013 |
ORF7b | 15 | A15del | GCC | --- | 15 | 15 | AY.9 | 0.001014 |
ORF7b | 15 | A15S | Gcc | Tcc | 14 | 14 | AY.119 | 0.000494 |
ORF7b | 15 | A15A | gcC | gcT | 10 | 14 | AY.25 | 0.00006 |
ORF7b | 15 | A15A | gcC | gcA | 4 | 14 | AY.25 | 0.000024 |
ORF7b | 15 | A15A | gcC | gcT | 12 | 14 | AY.98 | 0.000948 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 14 | AY.98 | 0.000158 |
ORF7b | 15 | A15S | Gcc | Tcc | 14 | 14 | B.1.1.44 | 0.033735 |
ORF7b | 15 | A15del | GCC | --- | 14 | 14 | P.1 | 0.000221 |
ORF7b | 15 | A15S | Gcc | Tcc | 13 | 13 | AY.41 | 0.003821 |
ORF7b | 15 | A15del | GCC | --- | 13 | 13 | AY.44 | 0.000079 |
ORF7b | 15 | A15S | Gcc | Tcc | 13 | 13 | AY.5 | 0.000268 |
ORF7b | 15 | A15S | Gcc | Tcc | 13 | 13 | AY.98.1 | 0.00063 |
ORF7b | 15 | A15A | gcC | gcT | 12 | 12 | AY.23.1 | 0.005008 |
ORF7b | 15 | A15T | Gcc | Acc | 12 | 12 | AY.47 | 0.000373 |
ORF7b | 15 | A15S | Gcc | Tcc | 12 | 12 | B.1.1.1 | 0.00392 |
ORF7b | 15 | A15del | GCC | --- | 12 | 12 | B.1.2 | 0.000106 |
ORF7b | 15 | A15S | Gcc | Tcc | 11 | 11 | AY.58 | 0.009982 |
ORF7b | 15 | A15del | GCC | --- | 11 | 11 | B.1 | 0.000101 |
ORF7b | 15 | A15S | Gcc | Tcc | 11 | 11 | B.1.214.3 | 0.078571 |
ORF7b | 15 | A15A | gcC | gcA | 11 | 11 | B.1.222 | 0.018613 |
ORF7b | 15 | A15A | gcC | gcT | 10 | 11 | P.1 | 0.000158 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 11 | P.1 | 0.000016 |
ORF7b | 15 | A15V | gCC | gTT | 4 | 10 | 0.222222 | |
ORF7b | 15 | A15V | gCc | gTc | 4 | 10 | 0.222222 | |
ORF7b | 15 | A15V | gCC | gTA | 2 | 10 | 0.111111 | |
ORF7b | 15 | A15F | GCc | TTc | 7 | 10 | All | 0.000001 |
ORF7b | 15 | A15I | GCc | ATc | 5 | 10 | All | 0.000001 |
ORF7b | 15 | A15I | GCC | ATT | 4 | 10 | All | 0.000001 |
ORF7b | 15 | A15F | GCC | TTT | 3 | 10 | All | 0.000001 |
ORF7b | 15 | A15I | GCC | ATA | 1 | 10 | All | 0 |
ORF7b | 15 | A15A | gcC | gcT | 10 | 10 | AY.102 | 0.000265 |
ORF7b | 15 | A15del | GCC | --- | 10 | 10 | AY.103 | 0.000062 |
ORF7b | 15 | A15del | GCC | --- | 10 | 10 | AY.20 | 0.000389 |
ORF7b | 15 | A15S | Gcc | Tcc | 10 | 10 | AY.9.2 | 0.000367 |
ORF7b | 15 | A15S | Gcc | Tcc | 10 | 10 | AY.98 | 0.00079 |
ORF7b | 15 | A15S | Gcc | Tcc | 10 | 10 | B.1.1.168 | 0.263158 |
ORF7b | 15 | A15T | Gcc | Acc | 10 | 10 | B.1.1.186 | 0.034364 |
ORF7b | 15 | A15A | gcC | gcT | 7 | 10 | B.1.2 | 0.000062 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 10 | B.1.2 | 0.000026 |
ORF7b | 15 | A15A | gcC | gcA | 10 | 10 | B.1.258.18 | 1 |
ORF7b | 15 | A15S | Gcc | Tcc | 10 | 10 | B.1.351 | 0.000297 |
ORF7b | 15 | A15A | gcC | gcA | 10 | 10 | B.1.367 | 0.007924 |
ORF7b | 15 | A15S | Gcc | Tcc | 10 | 10 | B.6.6 | 0.008889 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 9 | 0.277778 | |
ORF7b | 15 | A15S | GcC | TcA | 2 | 9 | 0.111111 | |
ORF7b | 15 | A15S | GcC | TcT | 2 | 9 | 0.111111 | |
ORF7b | 15 | A15A | gcC | gcA | 9 | 9 | A | 0.003483 |
ORF7b | 15 | A15A | gcC | gcT | 9 | 9 | AY.23 | 0.000628 |
ORF7b | 15 | A15P | Gcc | Ccc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF7b | 15 | A15S | Gcc | Tcc | 9 | 9 | B.1.111 | 0.010576 |
ORF7b | 15 | A15A | gcC | gcG | 7 | 9 | B.1.429 | 0.000165 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 9 | B.1.429 | 0.000047 |
ORF7b | 15 | A15S | Gcc | Tcc | 9 | 9 | B.1.561 | 0.003573 |
ORF7b | 15 | A15del2 | GCc | --c | 8 | 8 | All | 0.000002 |
ORF7b | 15 | A15C | GCc | TGc | 7 | 8 | All | 0.000001 |
ORF7b | 15 | A15C | GCC | TGT | 1 | 8 | All | 0 |
ORF7b | 15 | A15del | GCC | --- | 8 | 8 | AY.29 | 0.000126 |
ORF7b | 15 | A15S | Gcc | Tcc | 8 | 8 | AY.33 | 0.000534 |
ORF7b | 15 | A15del | GCC | --- | 8 | 8 | AY.43 | 0.000035 |
ORF7b | 15 | A15A | gcC | gcA | 8 | 8 | B | 0.001022 |
ORF7b | 15 | A15S | Gcc | Tcc | 8 | 8 | B.1.1.17 | 0.133333 |
ORF7b | 15 | A15del | GCC | --- | 8 | 8 | B.1.1.519 | 0.000318 |
ORF7b | 15 | A15S | Gcc | Tcc | 8 | 8 | B.1.177.81 | 0.001515 |
ORF7b | 15 | A15A | gcC | gcT | 7 | 8 | B.1.351 | 0.000208 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 8 | B.1.351 | 0.00003 |
ORF7b | 15 | A15S | Gcc | Tcc | 8 | 8 | B.1.617.1 | 0.001032 |
ORF7b | 15 | A15A | gcC | gcT | 4 | 7 | 0.222222 | |
ORF7b | 15 | A15I | GCC | ATT | 4 | 7 | 0.222222 | |
ORF7b | 15 | A15A | gcC | gcA | 3 | 7 | 0.166667 | |
ORF7b | 15 | A15I | GCc | ATc | 2 | 7 | 0.111111 | |
ORF7b | 15 | A15I | GCC | ATA | 1 | 7 | 0.055556 | |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | AY.118 | 0.000439 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | AY.20 | 0.000272 |
ORF7b | 15 | A15T | Gcc | Acc | 7 | 7 | AY.25 | 0.000042 |
ORF7b | 15 | A15V | gCc | gTc | 6 | 7 | AY.3 | 0.00006 |
ORF7b | 15 | A15V | gCC | gTT | 1 | 7 | AY.3 | 0.00001 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | AY.35 | 0.001631 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | AY.4.5 | 0.000752 |
ORF7b | 15 | A15V | gCc | gTc | 7 | 7 | AY.5.3 | 0.002362 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | AY.7.2 | 0.003915 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | B.1.1.220 | 0.013011 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | B.1.1.222 | 0.001428 |
ORF7b | 15 | A15del | GCC | --- | 7 | 7 | B.1.177 | 0.000092 |
ORF7b | 15 | A15A | gcC | gcT | 7 | 7 | B.1.177.60 | 0.001529 |
ORF7b | 15 | A15T | Gcc | Acc | 7 | 7 | B.1.2 | 0.000062 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | B.1.36.19 | 0.064815 |
ORF7b | 15 | A15del | GCC | --- | 7 | 7 | B.1.424 | 0.056452 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | B.1.632 | 0.04698 |
ORF7b | 15 | A15A | gcC | gcA | 7 | 7 | B.4.1 | 0.132075 |
ORF7b | 15 | A15del1 | Gcc | -cc | 7 | 7 | P.1 | 0.00011 |
ORF7b | 15 | A15S | Gcc | Tcc | 7 | 7 | P.2 | 0.001306 |
ORF7b | 15 | A15S | Gcc | Tcc | 6 | 6 | AY.117 | 0.000507 |
ORF7b | 15 | A15S | Gcc | Tcc | 6 | 6 | AY.120 | 0.000223 |
ORF7b | 15 | A15A | gcC | gcT | 6 | 6 | AY.46.6 | 0.000433 |
ORF7b | 15 | A15V | gCc | gTc | 6 | 6 | AY.75 | 0.000336 |
ORF7b | 15 | A15V | gCc | gTc | 6 | 6 | B.1 | 0.000055 |
ORF7b | 15 | A15del2 | GCc | --c | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7b | 15 | A15T | Gcc | Acc | 6 | 6 | B.1.160 | 0.000187 |
ORF7b | 15 | A15del | GCC | --- | 6 | 6 | B.1.429 | 0.000141 |
ORF7b | 15 | A15S | Gcc | Tcc | 6 | 6 | B.1.596 | 0.000523 |
ORF7b | 15 | A15S | Gcc | Tcc | 6 | 6 | B.1.9 | 0.037037 |
ORF7b | 15 | A15T | GcC | AcT | 2 | 5 | 0.111111 | |
ORF7b | 15 | A15G | gCc | gGc | 2 | 5 | 0.111111 | |
ORF7b | 15 | A15G | gCC | gGA | 2 | 5 | 0.111111 | |
ORF7b | 15 | A15T | Gcc | Acc | 2 | 5 | 0.111111 | |
ORF7b | 15 | A15T | GcC | AcA | 1 | 5 | 0.055556 | |
ORF7b | 15 | A15G | gCC | gGT | 1 | 5 | 0.055556 | |
ORF7b | 15 | A15D | gCc | gAc | 5 | 5 | AY.25 | 0.00003 |
ORF7b | 15 | A15del | GCC | --- | 5 | 5 | AY.26 | 0.000142 |
ORF7b | 15 | A15A | gcC | gcA | 5 | 5 | AY.29 | 0.000079 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | AY.3.1 | 0.000426 |
ORF7b | 15 | A15D | gCc | gAc | 5 | 5 | AY.4 | 0.000008 |
ORF7b | 15 | A15G | gCc | gGc | 5 | 5 | AY.5 | 0.000103 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | AY.69 | 0.000933 |
ORF7b | 15 | A15A | gcC | gcT | 5 | 5 | AY.95 | 0.003805 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | B.1.1.174 | 0.016892 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | B.1.1.28 | 0.001556 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | B.1.1.306 | 0.002192 |
ORF7b | 15 | A15C | GCc | TGc | 5 | 5 | B.1.1.70 | 0.001705 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | B.1.146 | 0.021186 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | B.1.232 | 0.002687 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 5 | B.1.258 | 0.000266 |
ORF7b | 15 | A15S | GcC | TcA | 1 | 5 | B.1.258 | 0.000067 |
ORF7b | 15 | A15T | Gcc | Acc | 5 | 5 | B.1.351 | 0.000149 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | B.1.36.17 | 0.00247 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | B.1.609 | 0.002397 |
ORF7b | 15 | A15A | gcC | gcT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF7b | 15 | A15T | Gcc | Acc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF7b | 15 | A15del | GCC | --- | 5 | 5 | B.1.621.1 | 0.002529 |
ORF7b | 15 | A15S | Gcc | Tcc | 5 | 5 | P.3 | 0.007974 |
ORF7b | 15 | A15F | GCc | TTc | 2 | 4 | 0.111111 | |
ORF7b | 15 | A15F | GCC | TTT | 2 | 4 | 0.111111 | |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | A | 0.001548 |
ORF7b | 15 | A15T | Gcc | Acc | 4 | 4 | AY.103 | 0.000025 |
ORF7b | 15 | A15A | gcC | gcT | 4 | 4 | AY.117 | 0.000338 |
ORF7b | 15 | A15del | GCC | --- | 4 | 4 | AY.120 | 0.000149 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.121 | 0.000541 |
ORF7b | 15 | A15A | gcC | gcT | 4 | 4 | AY.121 | 0.000541 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.13 | 0.000644 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 4 | AY.20 | 0.000078 |
ORF7b | 15 | A15A | gcC | gcG | 1 | 4 | AY.20 | 0.000039 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 4 | AY.20 | 0.000039 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.23 | 0.000279 |
ORF7b | 15 | A15del | GCC | --- | 4 | 4 | AY.3 | 0.00004 |
ORF7b | 15 | A15T | Gcc | Acc | 4 | 4 | AY.3 | 0.00004 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 4 | AY.39.1 | 0.000079 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 4 | AY.39.1 | 0.000079 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.4.2 | 0.000087 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.42 | 0.000161 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.46 | 0.000416 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.47 | 0.000124 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.6 | 0.000165 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AY.61 | 0.000419 |
ORF7b | 15 | A15del | GCC | --- | 4 | 4 | AY.66 | 0.004278 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | AZ.4 | 0.013423 |
ORF7b | 15 | A15del | GCC | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7b | 15 | A15V | gCc | gTc | 4 | 4 | B.1.1.216 | 0.003562 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | B.1.1.63 | 0.001543 |
ORF7b | 15 | A15V | gCc | gTc | 4 | 4 | B.1.1.70 | 0.001364 |
ORF7b | 15 | A15V | gCc | gTc | 4 | 4 | B.1.160 | 0.000125 |
ORF7b | 15 | A15A | gcC | gcA | 4 | 4 | B.1.177.21 | 0.000306 |
ORF7b | 15 | A15A | gcC | gcA | 4 | 4 | B.1.177.73 | 0.002265 |
ORF7b | 15 | A15A | gcC | gcA | 4 | 4 | B.1.177.86 | 0.000734 |
ORF7b | 15 | A15del | GCC | --- | 4 | 4 | B.1.177.86 | 0.000734 |
ORF7b | 15 | A15A | gcC | gcA | 4 | 4 | B.1.237 | 0.0199 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | B.1.36.16 | 0.005698 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | B.1.425 | 0.011976 |
ORF7b | 15 | A15V | gCc | gTc | 4 | 4 | B.1.525 | 0.000453 |
ORF7b | 15 | A15A | gcC | gcA | 4 | 4 | B.1.576 | 0.003626 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | C.35 | 0.003096 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | P.1.17 | 0.000647 |
ORF7b | 15 | A15S | Gcc | Tcc | 4 | 4 | P.7 | 0.017467 |
ORF7b | 15 | A15del | GCC | --- | 4 | 4 | Q.8 | 0.00066 |
ORF7b | 15 | A15A | gcC | gcT | 4 | 4 | R.1 | 0.00036 |
ORF7b | 15 | A15C | GCc | TGc | 2 | 3 | 0.111111 | |
ORF7b | 15 | A15C | GCC | TGT | 1 | 3 | 0.055556 | |
ORF7b | 15 | A15N | GCc | AAc | 3 | 3 | All | 0.000001 |
ORF7b | 15 | A15L | GCC | TTA | 2 | 3 | All | 0 |
ORF7b | 15 | A15L | GCc | CTc | 1 | 3 | All | 0 |
ORF7b | 15 | A15D | gCc | gAc | 3 | 3 | AY.103 | 0.000019 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | AY.104 | 0.005952 |
ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.118 | 0.000188 |
ORF7b | 15 | A15A | gcC | gcT | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.121 | 0.000406 |
ORF7b | 15 | A15T | Gcc | Acc | 3 | 3 | AY.20 | 0.000117 |
ORF7b | 15 | A15A | gcC | gcT | 3 | 3 | AY.27 | 0.000194 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 3 | AY.33 | 0.000134 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 3 | AY.33 | 0.000067 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | AY.34 | 0.000291 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 3 | AY.36 | 0.000296 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 3 | AY.36 | 0.000148 |
ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.39 | 0.000074 |
ORF7b | 15 | A15T | Gcc | Acc | 3 | 3 | AY.43 | 0.000013 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | AY.45 | 0.000365 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | AY.46.4 | 0.000494 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 3 | AY.6 | 0.000123 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | AY.71 | 0.001425 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | AY.80 | 0.003386 |
ORF7b | 15 | A15V | gCc | gTc | 3 | 3 | AY.90 | 0.002053 |
ORF7b | 15 | A15del | GCC | --- | 3 | 3 | AY.98 | 0.000237 |
ORF7b | 15 | A15D | gCc | gAc | 3 | 3 | B.1 | 0.000027 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 3 | B.1.1 | 0.000036 |
ORF7b | 15 | A15V | gCC | gTA | 1 | 3 | B.1.1 | 0.000018 |
ORF7b | 15 | A15del | GCC | --- | 3 | 3 | B.1.1.159 | 0.014019 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.1.521 | 0.016043 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 3 | B.1.1.70 | 0.001023 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.160 | 0.000094 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 3 | B.1.177.7 | 0.00033 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 3 | B.1.177.7 | 0.000165 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.177.75 | 0.003122 |
ORF7b | 15 | A15del1 | Gcc | -cc | 3 | 3 | B.1.2 | 0.000026 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 3 | B.1.221 | 0.000142 |
ORF7b | 15 | A15V | gCC | gTT | 1 | 3 | B.1.221 | 0.000071 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.234 | 0.000396 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.240 | 0.000647 |
ORF7b | 15 | A15V | gCC | gTT | 2 | 3 | B.1.243 | 0.000139 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 3 | B.1.243 | 0.00007 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.311 | 0.000824 |
ORF7b | 15 | A15del | GCC | --- | 3 | 3 | B.1.351 | 0.000089 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.36.8 | 0.003 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 3 | B.1.411 | 0.011111 |
ORF7b | 15 | A15T | Gcc | Acc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF7b | 15 | A15del | GCC | --- | 3 | 3 | B.1.568 | 0.003333 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 3 | B.1.590 | 0.013636 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.595 | 0.000783 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 3 | B.1.597 | 0.013889 |
ORF7b | 15 | A15A | gcC | gcA | 3 | 3 | B.1.600 | 0.017544 |
ORF7b | 15 | A15V | gCc | gTc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.621 | 0.000266 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | B.1.91 | 0.006224 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | L.3 | 0.010638 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | P.1.11 | 0.030612 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 3 | P.1.14 | 0.000096 |
ORF7b | 15 | A15A | gcC | gcG | 1 | 3 | P.1.14 | 0.000048 |
ORF7b | 15 | A15N | GCc | AAc | 3 | 3 | P.2 | 0.00056 |
ORF7b | 15 | A15S | Gcc | Tcc | 3 | 3 | Q.1 | 0.000379 |
ORF7b | 15 | A15V | gCc | gTc | 3 | 3 | Q.1 | 0.000379 |
ORF7b | 15 | A15D | gCc | gAc | 2 | 2 | 0.111111 | |
ORF7b | 15 | A15Y | GCc | TAc | 2 | 2 | 0.111111 | |
ORF7b | 15 | A15X | GCC | TGA | 2 | 2 | 0.111111 | |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | A | 0.000774 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | A.2.5 | 0.000998 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | A.25 | 0.036364 |
ORF7b | 15 | A15X | GCC | TGA | 2 | 2 | All | 0 |
ORF7b | 15 | A15Y | GCc | TAc | 2 | 2 | All | 0 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | AY.1 | 0.000791 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.102 | 0.000053 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.116 | 0.000574 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | AY.116 | 0.000574 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | AY.120 | 0.000074 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF7b | 15 | A15T | Gcc | Acc | 2 | 2 | AY.121 | 0.000271 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.14 | 0.000176 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | AY.25 | 0.000012 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | AY.26 | 0.000057 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | AY.29 | 0.000032 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF7b | 15 | A15P | Gcc | Ccc | 2 | 2 | AY.4 | 0.000003 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.4.3 | 0.001684 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.4.4 | 0.000818 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | AY.43 | 0.000009 |
ORF7b | 15 | A15D | gCc | gAc | 2 | 2 | AY.43 | 0.000009 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 2 | AY.44 | 0.000006 |
ORF7b | 15 | A15T | GcC | AcT | 1 | 2 | AY.44 | 0.000006 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 2 | AY.5 | 0.000021 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 2 | AY.5 | 0.000021 |
ORF7b | 15 | A15T | Gcc | Acc | 2 | 2 | AY.5.3 | 0.000675 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.59 | 0.001059 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.60 | 0.001876 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.64 | 0.00119 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.75 | 0.000112 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7b | 15 | A15T | Gcc | Acc | 2 | 2 | AY.75.1 | 0.000361 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.86 | 0.00166 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | AY.9.2 | 0.000073 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.90 | 0.001369 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | AY.92 | 0.000575 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | AY.98.1 | 0.000097 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 2 | AY.99.2 | 0.000184 |
ORF7b | 15 | A15G | gCc | gGc | 1 | 2 | B.1 | 0.000009 |
ORF7b | 15 | A15G | gCC | gGA | 1 | 2 | B.1 | 0.000009 |
ORF7b | 15 | A15T | Gcc | Acc | 2 | 2 | B.1.1 | 0.000036 |
ORF7b | 15 | A15L | GCc | CTc | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 15 | A15L | GCC | TTA | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 2 | B.1.1.153 | 0.002191 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.1.158 | 0.02439 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.1.171 | 0.007353 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.1.219 | 0.01 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.1.369 | 0.000892 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.1.372 | 0.001377 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 2 | B.1.1.409 | 0.005666 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF7b | 15 | A15del1 | GCC | -NN | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.177.2 | 0.009091 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | B.1.177.55 | 0.004662 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 2 | B.1.177.6 | 0.001953 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.214.1 | 0.04 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.214.2 | 0.001199 |
ORF7b | 15 | A15F | GCc | TTc | 1 | 2 | B.1.221 | 0.000071 |
ORF7b | 15 | A15F | GCC | TTT | 1 | 2 | B.1.221 | 0.000071 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 2 | B.1.221 | 0.000071 |
ORF7b | 15 | A15T | GcC | AcA | 1 | 2 | B.1.221 | 0.000071 |
ORF7b | 15 | A15S | GcC | TcA | 2 | 2 | B.1.258.17 | 0.000208 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.279 | 0.001027 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.36.33 | 0.015152 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.367 | 0.001585 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.367 | 0.001585 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | B.1.39 | 0.007812 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.398 | 0.005952 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.400 | 0.000858 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.1.416 | 0.002538 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | B.1.427 | 0.000101 |
ORF7b | 15 | A15V | gCc | gTc | 2 | 2 | B.1.429 | 0.000047 |
ORF7b | 15 | A15del1 | Gcc | -cc | 2 | 2 | B.1.429 | 0.000047 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.499 | 0.002101 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.564 | 0.000852 |
ORF7b | 15 | A15A | gcC | gcA | 2 | 2 | B.1.627 | 0.00404 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 2 | B.1.627 | 0.00202 |
ORF7b | 15 | A15S | GcC | TcA | 1 | 2 | B.1.627 | 0.00202 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | B.1.9.5 | 0.011364 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | B.6 | 0.00182 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | C.16 | 0.002121 |
ORF7b | 15 | A15A | gcC | gcT | 2 | 2 | C.37 | 0.000232 |
ORF7b | 15 | A15T | Gcc | Acc | 2 | 2 | P.1 | 0.000032 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF7b | 15 | A15del | GCC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | P.6 | 0.006289 |
ORF7b | 15 | A15S | Gcc | Tcc | 2 | 2 | Q.8 | 0.00033 |
ORF7b | 15 | A15L | GCC | TTA | 1 | 1 | 0.055556 | |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | A.2.4 | 0.003367 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | A.2.5 | 0.000499 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | A.23.1 | 0.000704 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AA.1 | 0.007246 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AD.2 | 0.000219 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AE.8 | 0.000489 |
ORF7b | 15 | A15E | gCC | gAA | 1 | 1 | All | 0 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.105 | 0.000643 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.106 | 0.000335 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.109 | 0.00074 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.110 | 0.000113 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.111 | 0.000183 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.113 | 0.000142 |
ORF7b | 15 | A15del1 | Gcc | -cc | 1 | 1 | AY.113 | 0.000142 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.114 | 0.000231 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.118 | 0.000063 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.119 | 0.000035 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.120.1 | 0.000321 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.23.1 | 0.000417 |
ORF7b | 15 | A15del1 | Gcc | -cc | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.29 | 0.000016 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.30 | 0.000396 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.35 | 0.000233 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.39.1 | 0.00004 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.40 | 0.000964 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 15 | A15P | GcC | CcT | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.46.5 | 0.000198 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.46.6 | 0.000072 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.5.3 | 0.000337 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | AY.52 | 0.000814 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.54 | 0.000095 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | AY.7.1 | 0.000113 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | AY.7.2 | 0.000559 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.70 | 0.000209 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.75 | 0.000056 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | AY.80 | 0.001129 |
ORF7b | 15 | A15F | GCc | TTc | 1 | 1 | AY.82 | 0.001357 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.85 | 0.000427 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | AY.9 | 0.000068 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | AY.9 | 0.000068 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | AY.9.1 | 0.000084 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 15 | A15P | Gcc | Ccc | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.92 | 0.000287 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.95 | 0.000761 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.95 | 0.000761 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | AY.98 | 0.000079 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | AY.98 | 0.000079 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.99 | 0.001049 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | AY.99.2 | 0.000092 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B | 0.000128 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B | 0.000128 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B | 0.000128 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B | 0.000128 |
ORF7b | 15 | A15E | gCC | gAA | 1 | 1 | B.1 | 0.000009 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 15 | A15del2 | GCc | --c | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 15 | A15F | GCc | TTc | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.117 | 0.009709 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.121 | 0.002427 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.231 | 0.003096 |
ORF7b | 15 | A15T | GcC | AcA | 1 | 1 | B.1.1.237 | 0.005405 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.1.253 | 0.002506 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.254 | 0.011236 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.269 | 0.001353 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.1.297 | 0.002237 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.334 | 0.016393 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.363 | 0.005988 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.387 | 0.058824 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B.1.1.442 | 0.018519 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.46 | 0.004367 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7b | 15 | A15F | GCc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B.1.112 | 0.005181 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.120 | 0.007692 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.142 | 0.002899 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.146 | 0.004237 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.149 | 0.003425 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.157 | 0.002985 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 15 | A15I | GCc | ATc | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 15 | A15P | Gcc | Ccc | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.177.28 | 0.007407 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7b | 15 | A15G | gCc | gGc | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.179 | 0.003759 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 15 | A15P | Gcc | Ccc | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 15 | A15I | GCc | ATc | 1 | 1 | B.1.221 | 0.000071 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.221.1 | 0.002907 |
ORF7b | 15 | A15T | GcC | AcA | 1 | 1 | B.1.221.4 | 0.004167 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B.1.232 | 0.000537 |
ORF7b | 15 | A15A | gcC | gcG | 1 | 1 | B.1.232 | 0.000537 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.235 | 0.002519 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.240 | 0.000216 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.242 | 0.018868 |
ORF7b | 15 | A15del1 | Gcc | -cc | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 15 | A15del1 | Gcc | -cc | 1 | 1 | B.1.247 | 0.014925 |
ORF7b | 15 | A15T | GcC | AcA | 1 | 1 | B.1.258 | 0.000067 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.293 | 0.0125 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.3 | 0.002618 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.301 | 0.005917 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.305 | 0.002151 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.311 | 0.000275 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.319 | 0.003049 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.324 | 0.001605 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.348 | 0.018182 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.349 | 0.000715 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7b | 15 | A15G | gCc | gGc | 1 | 1 | B.1.36.19 | 0.009259 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.36.25 | 0.002208 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7b | 15 | A15I | GCc | ATc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.36.7 | 0.004 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.362 | 0.001541 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.370 | 0.008 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.375 | 0.00082 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.380 | 0.006623 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.389 | 0.001002 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.399 | 0.001934 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.404 | 0.001302 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.406 | 0.006061 |
ORF7b | 15 | A15S | GcC | TcA | 1 | 1 | B.1.411 | 0.003704 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.416 | 0.001269 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7b | 15 | A15S | GCc | AGc | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 15 | A15G | gCc | gGc | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 15 | A15F | GCc | TTc | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.428 | 0.00102 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.432 | 0.011236 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.456 | 0.003268 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.511 | 0.034483 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.525 | 0.000113 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B.1.525 | 0.000113 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.556 | 0.007519 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.560 | 0.00463 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | B.1.568 | 0.001111 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.575 | 0.000303 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.576 | 0.000907 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 15 | A15P | Gcc | Ccc | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.599 | 0.00365 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.601 | 0.030303 |
ORF7b | 15 | A15del1 | Gcc | -cc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.1.621 | 0.000089 |
ORF7b | 15 | A15A | gcC | gcA | 1 | 1 | B.1.623 | 0.000536 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.625 | 0.002353 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.636 | 0.006711 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.1.93 | 0.000934 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | B.23 | 0.002924 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | B.3 | 0.000831 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | B.4 | 0.002208 |
ORF7b | 15 | A15T | Gcc | Acc | 1 | 1 | B.40 | 0.000364 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | C.18 | 0.002591 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | C.23 | 0.005814 |
ORF7b | 15 | A15D | gCc | gAc | 1 | 1 | C.39 | 0.018868 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | D.2 | 0.000075 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | D.2 | 0.000075 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | N.5 | 0.001767 |
ORF7b | 15 | A15V | gCc | gTc | 1 | 1 | P.1 | 0.000016 |
ORF7b | 15 | A15del1 | Gcc | -cc | 1 | 1 | P.1.13 | 0.000898 |
ORF7b | 15 | A15A | gcC | gcT | 1 | 1 | P.1.15 | 0.000232 |
ORF7b | 15 | A15del | GCC | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7b | 15 | A15del2 | GCc | --c | 1 | 1 | Q.1 | 0.000126 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | Q.4 | 0.000455 |
ORF7b | 15 | A15S | Gcc | Tcc | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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