CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 15

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7b	15	A15A		syn	gcC	gcA	26763	25596	0.956395	27798-27800
ORF7b	15	A15A		syn	gcC	gcT	26763	1026	0.0383365	27798-27800
ORF7b	15	A15A		syn	gcC	gcG	26763	141	0.00526847	27798-27800
ORF7b	15	A15S		nonsyn	Gcc	Tcc	5143	4818	0.936807	27798-27800
ORF7b	15	A15S		nonsyn	GcC	TcA	5143	318	0.0618316	27798-27800
ORF7b	15	A15S		nonsyn	GcC	TcT	5143	6	0.00116663	27798-27800
ORF7b	15	A15S		nonsyn	GCc	AGc	5143	1	0.000194439	27798-27800
ORF7b	15	A15del		del	GCC	---	796	796	1	27798-27800
ORF7b	15	A15V		nonsyn	gCc	gTc	223	212	0.950673	27798-27800
ORF7b	15	A15V		nonsyn	gCC	gTT	223	8	0.0358744	27798-27800
ORF7b	15	A15V		nonsyn	gCC	gTA	223	3	0.0134529	27798-27800
ORF7b	15	A15T		nonsyn	Gcc	Acc	186	178	0.956989	27798-27800
ORF7b	15	A15T		nonsyn	GcC	AcA	186	5	0.0268817	27798-27800
ORF7b	15	A15T		nonsyn	GcC	AcT	186	3	0.016129	27798-27800
ORF7b	15	A15D		nonsyn	gCc	gAc	33	33	1	27798-27800
ORF7b	15	A15P		nonsyn	Gcc	Ccc	31	30	0.967742	27798-27800
ORF7b	15	A15P		nonsyn	GcC	CcT	31	1	0.0322581	27798-27800
ORF7b	15	A15del1		del	Gcc	-cc	20	18	0.9	27798-27800
ORF7b	15	A15del1		del	GCC	-NN	20	2	0.1	27798-27800
ORF7b	15	A15G		nonsyn	gCc	gGc	15	11	0.733333	27798-27800
ORF7b	15	A15G		nonsyn	gCC	gGA	15	3	0.2	27798-27800
ORF7b	15	A15G		nonsyn	gCC	gGT	15	1	0.0666667	27798-27800
ORF7b	15	A15F		nonsyn	GCc	TTc	10	7	0.7	27798-27800
ORF7b	15	A15I		nonsyn	GCc	ATc	10	5	0.5	27798-27800
ORF7b	15	A15I		nonsyn	GCC	ATT	10	4	0.4	27798-27800
ORF7b	15	A15F		nonsyn	GCC	TTT	10	3	0.3	27798-27800
ORF7b	15	A15I		nonsyn	GCC	ATA	10	1	0.1	27798-27800
ORF7b	15	A15del2		del	GCc	--c	8	8	1	27798-27800
ORF7b	15	A15C		nonsyn	GCc	TGc	8	7	0.875	27798-27800
ORF7b	15	A15C		nonsyn	GCC	TGT	8	1	0.125	27798-27800
ORF7b	15	A15N		nonsyn	GCc	AAc	3	3	1	27798-27800
ORF7b	15	A15L		nonsyn	GCC	TTA	3	2	0.666667	27798-27800
ORF7b	15	A15L		nonsyn	GCc	CTc	3	1	0.333333	27798-27800
ORF7b	15	A15X		nonsyn	GCC	TGA	2	2	1	27798-27800
ORF7b	15	A15Y		nonsyn	GCc	TAc	2	2	1	27798-27800
ORF7b	15	A15E		nonsyn	gCC	gAA	1	1	1	27798-27800

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7b	15	A15A	gcC	gcA	25596	26763	All	0.004896
ORF7b	15	A15A	gcC	gcT	1026	26763	All	0.000196
ORF7b	15	A15A	gcC	gcG	141	26763	All	0.000027
ORF7b	15	A15A	gcC	gcA	10832	10833	B.1.258	0.720836
ORF7b	15	A15A	gcC	gcT	1	10833	B.1.258	0.000067
ORF7b	15	A15A	gcC	gcA	8563	8563	B.1.258.17	0.89031
ORF7b	15	A15S	Gcc	Tcc	4818	5143	All	0.000921
ORF7b	15	A15S	GcC	TcA	318	5143	All	0.000061
ORF7b	15	A15S	GcC	TcT	6	5143	All	0.000001
ORF7b	15	A15S	GCc	AGc	1	5143	All	0
ORF7b	15	A15A	gcC	gcA	2351	2351	B.1.258.11	0.931827
ORF7b	15	A15del	GCC	---	796	796	All	0.000152
ORF7b	15	A15A	gcC	gcA	784	784	B.1.258.14	0.768627
ORF7b	15	A15S	Gcc	Tcc	724	725	B.1.1	0.013134
ORF7b	15	A15S	GcC	TcA	1	725	B.1.1	0.000018
ORF7b	15	A15S	Gcc	Tcc	698	698	B.1.1.7	0.000625
ORF7b	15	A15A	gcC	gcA	603	604	B.1.258.16	0.986907
ORF7b	15	A15A	gcC	gcT	1	604	B.1.258.16	0.001637
ORF7b	15	A15A	gcC	gcA	483	483	B.1.258.7	0.923518
ORF7b	15	A15A	gcC	gcT	419	419	AY.3	0.004168
ORF7b	15	A15A	gcC	gcA	359	359	B.1.258.22	0.957333
ORF7b	15	A15S	Gcc	Tcc	327	340	B.1	0.002995
ORF7b	15	A15S	GcC	TcA	12	340	B.1	0.00011
ORF7b	15	A15S	GcC	TcT	1	340	B.1	0.000009
ORF7b	15	A15S	Gcc	Tcc	313	313	AY.4	0.000487
ORF7b	15	A15S	Gcc	Tcc	279	279	B.1.1.368	0.861111
ORF7b	15	A15A	gcC	gcA	270	270	B.1.258.4	0.931034
ORF7b	15	A15A	gcC	gcA	249	255	B.1	0.002281
ORF7b	15	A15A	gcC	gcT	6	255	B.1	0.000055
ORF7b	15	A15S	Gcc	Tcc	253	253	B.1.36.31	0.443082
ORF7b	15	A15V	gCc	gTc	212	223	All	0.000041
ORF7b	15	A15V	gCC	gTT	8	223	All	0.000002
ORF7b	15	A15V	gCC	gTA	3	223	All	0.000001
ORF7b	15	A15S	GcC	TcA	200	200	B.1.258.9	1
ORF7b	15	A15T	Gcc	Acc	178	186	All	0.000034
ORF7b	15	A15T	GcC	AcA	5	186	All	0.000001
ORF7b	15	A15T	GcC	AcT	3	186	All	0.000001
ORF7b	15	A15S	Gcc	Tcc	173	173	B.1.617.2	0.000651
ORF7b	15	A15A	gcC	gcG	107	148	AY.4	0.000167
ORF7b	15	A15A	gcC	gcT	39	148	AY.4	0.000061
ORF7b	15	A15A	gcC	gcA	2	148	AY.4	0.000003
ORF7b	15	A15S	Gcc	Tcc	143	143	B.1.427	0.007221
ORF7b	15	A15A	gcC	gcA	139	139	B.1.258.19	0.985816
ORF7b	15	A15S	Gcc	Tcc	129	129	B.1.429	0.003035
ORF7b	15	A15A	gcC	gcA	128	128	B.1.258.21	0.992248
ORF7b	15	A15del	GCC	---	124	124	AY.4	0.000193
ORF7b	15	A15S	Gcc	Tcc	120	121	B.1.9.4	0.736196
ORF7b	15	A15S	GcC	TcT	1	121	B.1.9.4	0.006135
ORF7b	15	A15S	Gcc	Tcc	114	114	AY.25	0.000686
ORF7b	15	A15del	GCC	---	112	112	B.1.1.7	0.0001
ORF7b	15	A15A	gcC	gcA	104	104	B.1.258.12	0.818898
ORF7b	15	A15S	GcC	TcA	98	101	B.1.258.11	0.038843
ORF7b	15	A15S	Gcc	Tcc	3	101	B.1.258.11	0.001189
ORF7b	15	A15A	gcC	gcA	100	100	B.1.258.5	0.877193
ORF7b	15	A15S	Gcc	Tcc	99	99	AY.43	0.000439
ORF7b	15	A15del	GCC	---	94	94	B.1.36	0.013715
ORF7b	15	A15S	Gcc	Tcc	93	93	B.1.2	0.000819
ORF7b	15	A15S	Gcc	Tcc	87	87	AY.102	0.002307
ORF7b	15	A15A	gcC	gcA	87	87	B.1.258.10	0.988636
ORF7b	15	A15A	gcC	gcT	77	83	B.1.617.2	0.00029
ORF7b	15	A15A	gcC	gcA	5	83	B.1.617.2	0.000019
ORF7b	15	A15A	gcC	gcG	1	83	B.1.617.2	0.000004
ORF7b	15	A15A	gcC	gcT	63	74	B.1.1.7	0.000056
ORF7b	15	A15A	gcC	gcA	10	74	B.1.1.7	0.000009
ORF7b	15	A15A	gcC	gcG	1	74	B.1.1.7	0.000001
ORF7b	15	A15A	gcC	gcT	70	70	B.1.526	0.001645
ORF7b	15	A15S	Gcc	Tcc	59	59	AY.26	0.00167
ORF7b	15	A15A	gcC	gcA	59	59	B.1.258.20	0.936508
ORF7b	15	A15A	gcC	gcA	29	56	B.1.177	0.000382
ORF7b	15	A15A	gcC	gcT	27	56	B.1.177	0.000356
ORF7b	15	A15S	Gcc	Tcc	55	55	B.1.36	0.008025
ORF7b	15	A15S	Gcc	Tcc	52	53	B.1.177	0.000685
ORF7b	15	A15S	GcC	TcT	1	53	B.1.177	0.000013
ORF7b	15	A15A	gcC	gcA	51	51	B.1.258.15	0.962264
ORF7b	15	A15S	Gcc	Tcc	51	51	B.1.526	0.001199
ORF7b	15	A15A	gcC	gcA	49	49	B.1.258.6	0.960784
ORF7b	15	A15A	gcC	gcG	22	45	AY.103	0.000137
ORF7b	15	A15A	gcC	gcT	21	45	AY.103	0.00013
ORF7b	15	A15A	gcC	gcA	2	45	AY.103	0.000012
ORF7b	15	A15S	Gcc	Tcc	45	45	C.37	0.005223
ORF7b	15	A15del	GCC	---	42	42	AY.47	0.001306
ORF7b	15	A15S	Gcc	Tcc	41	41	AY.44	0.00025
ORF7b	15	A15T	Gcc	Acc	38	38	B.1.1.7	0.000034
ORF7b	15	A15A	gcC	gcA	33	38	B.1.160	0.001029
ORF7b	15	A15A	gcC	gcT	5	38	B.1.160	0.000156
ORF7b	15	A15A	gcC	gcT	37	38	B.1.391	0.041714
ORF7b	15	A15A	gcC	gcA	1	38	B.1.391	0.001127
ORF7b	15	A15S	Gcc	Tcc	36	36	B.1.1.317	0.014821
ORF7b	15	A15del	GCC	---	35	35	B.1.221	0.002486
ORF7b	15	A15S	Gcc	Tcc	34	34	AY.103	0.000211
ORF7b	15	A15V	gCc	gTc	34	34	B.1.2	0.000299
ORF7b	15	A15del	GCC	---	34	34	B.1.526	0.000799
ORF7b	15	A15D	gCc	gAc	33	33	All	0.000006
ORF7b	15	A15T	Gcc	Acc	33	33	AY.4	0.000051
ORF7b	15	A15S	Gcc	Tcc	32	32	B.1.1.194	0.158416
ORF7b	15	A15S	Gcc	Tcc	32	32	P.1	0.000504
ORF7b	15	A15P	Gcc	Ccc	30	31	All	0.000006
ORF7b	15	A15P	GcC	CcT	1	31	All	0
ORF7b	15	A15S	Gcc	Tcc	31	31	B.1.243	0.002157
ORF7b	15	A15A	gcC	gcA	31	31	B.1.258.24	0.333333
ORF7b	15	A15V	gCc	gTc	30	30	AY.4	0.000047
ORF7b	15	A15A	gcC	gcA	30	30	B.1.258.23	0.714286
ORF7b	15	A15del	GCC	---	28	28	AY.9.1	0.002344
ORF7b	15	A15V	gCc	gTc	28	28	B.1.1.7	0.000025
ORF7b	15	A15del	GCC	---	27	27	B.1.1	0.00049
ORF7b	15	A15A	gcC	gcA	21	25	B.1.1	0.000381
ORF7b	15	A15A	gcC	gcT	4	25	B.1.1	0.000073
ORF7b	15	A15S	Gcc	Tcc	24	24	AY.9	0.001622
ORF7b	15	A15S	Gcc	Tcc	23	24	B.1.221	0.001634
ORF7b	15	A15S	GcC	TcT	1	24	B.1.221	0.000071
ORF7b	15	A15del	GCC	---	23	23	AY.25	0.000138
ORF7b	15	A15S	Gcc	Tcc	22	22	AY.100	0.001012
ORF7b	15	A15S	Gcc	Tcc	22	22	B.1.177.73	0.012458
ORF7b	15	A15A	gcC	gcA	17	22	B.1.221	0.001208
ORF7b	15	A15A	gcC	gcT	5	22	B.1.221	0.000355
ORF7b	15	A15A	gcC	gcT	21	21	AY.44	0.000128
ORF7b	15	A15A	gcC	gcT	21	21	AY.46	0.002186
ORF7b	15	A15S	Gcc	Tcc	21	21	B.1.1.216	0.0187
ORF7b	15	A15V	gCc	gTc	21	21	B.1.351	0.000624
ORF7b	15	A15S	Gcc	Tcc	21	21	P.1.14	0.001004
ORF7b	15	A15del1	Gcc	-cc	18	20	All	0.000003
ORF7b	15	A15del1	GCC	-NN	2	20	All	0
ORF7b	15	A15A	gcC	gcA	20	20	AY.24	0.008621
ORF7b	15	A15S	Gcc	Tcc	20	20	AY.3	0.000199
ORF7b	15	A15A	gcC	gcA	19	20	B.1.609	0.009108
ORF7b	15	A15A	gcC	gcT	1	20	B.1.609	0.000479
ORF7b	15	A15del	GCC	---	18	18	B.1.617.2	0.000068
ORF7b	15	A15A	gcC	gcT	16	16	AY.34	0.001551
ORF7b	15	A15S	Gcc	Tcc	16	16	B.1.1.519	0.000635
ORF7b	15	A15G	gCc	gGc	11	15	All	0.000002
ORF7b	15	A15G	gCC	gGA	3	15	All	0.000001
ORF7b	15	A15G	gCC	gGT	1	15	All	0
ORF7b	15	A15P	Gcc	Ccc	15	15	AY.103	0.000093
ORF7b	15	A15S	Gcc	Tcc	15	15	AY.39	0.000371
ORF7b	15	A15A	gcC	gcT	12	15	AY.43	0.000053
ORF7b	15	A15A	gcC	gcA	3	15	AY.43	0.000013
ORF7b	15	A15del	GCC	---	15	15	AY.9	0.001014
ORF7b	15	A15S	Gcc	Tcc	14	14	AY.119	0.000494
ORF7b	15	A15A	gcC	gcT	10	14	AY.25	0.00006
ORF7b	15	A15A	gcC	gcA	4	14	AY.25	0.000024
ORF7b	15	A15A	gcC	gcT	12	14	AY.98	0.000948
ORF7b	15	A15A	gcC	gcA	2	14	AY.98	0.000158
ORF7b	15	A15S	Gcc	Tcc	14	14	B.1.1.44	0.033735
ORF7b	15	A15del	GCC	---	14	14	P.1	0.000221
ORF7b	15	A15S	Gcc	Tcc	13	13	AY.41	0.003821
ORF7b	15	A15del	GCC	---	13	13	AY.44	0.000079
ORF7b	15	A15S	Gcc	Tcc	13	13	AY.5	0.000268
ORF7b	15	A15S	Gcc	Tcc	13	13	AY.98.1	0.00063
ORF7b	15	A15A	gcC	gcT	12	12	AY.23.1	0.005008
ORF7b	15	A15T	Gcc	Acc	12	12	AY.47	0.000373
ORF7b	15	A15S	Gcc	Tcc	12	12	B.1.1.1	0.00392
ORF7b	15	A15del	GCC	---	12	12	B.1.2	0.000106
ORF7b	15	A15S	Gcc	Tcc	11	11	AY.58	0.009982
ORF7b	15	A15del	GCC	---	11	11	B.1	0.000101
ORF7b	15	A15S	Gcc	Tcc	11	11	B.1.214.3	0.078571
ORF7b	15	A15A	gcC	gcA	11	11	B.1.222	0.018613
ORF7b	15	A15A	gcC	gcT	10	11	P.1	0.000158
ORF7b	15	A15A	gcC	gcA	1	11	P.1	0.000016
ORF7b	15	A15V	gCC	gTT	4	10		0.222222
ORF7b	15	A15V	gCc	gTc	4	10		0.222222
ORF7b	15	A15V	gCC	gTA	2	10		0.111111
ORF7b	15	A15F	GCc	TTc	7	10	All	0.000001
ORF7b	15	A15I	GCc	ATc	5	10	All	0.000001
ORF7b	15	A15I	GCC	ATT	4	10	All	0.000001
ORF7b	15	A15F	GCC	TTT	3	10	All	0.000001
ORF7b	15	A15I	GCC	ATA	1	10	All	0
ORF7b	15	A15A	gcC	gcT	10	10	AY.102	0.000265
ORF7b	15	A15del	GCC	---	10	10	AY.103	0.000062
ORF7b	15	A15del	GCC	---	10	10	AY.20	0.000389
ORF7b	15	A15S	Gcc	Tcc	10	10	AY.9.2	0.000367
ORF7b	15	A15S	Gcc	Tcc	10	10	AY.98	0.00079
ORF7b	15	A15S	Gcc	Tcc	10	10	B.1.1.168	0.263158
ORF7b	15	A15T	Gcc	Acc	10	10	B.1.1.186	0.034364
ORF7b	15	A15A	gcC	gcT	7	10	B.1.2	0.000062
ORF7b	15	A15A	gcC	gcA	3	10	B.1.2	0.000026
ORF7b	15	A15A	gcC	gcA	10	10	B.1.258.18	1
ORF7b	15	A15S	Gcc	Tcc	10	10	B.1.351	0.000297
ORF7b	15	A15A	gcC	gcA	10	10	B.1.367	0.007924
ORF7b	15	A15S	Gcc	Tcc	10	10	B.6.6	0.008889
ORF7b	15	A15S	Gcc	Tcc	5	9		0.277778
ORF7b	15	A15S	GcC	TcA	2	9		0.111111
ORF7b	15	A15S	GcC	TcT	2	9		0.111111
ORF7b	15	A15A	gcC	gcA	9	9	A	0.003483
ORF7b	15	A15A	gcC	gcT	9	9	AY.23	0.000628
ORF7b	15	A15P	Gcc	Ccc	9	9	B.1.1.7	0.000008
ORF7b	15	A15S	Gcc	Tcc	9	9	B.1.111	0.010576
ORF7b	15	A15A	gcC	gcG	7	9	B.1.429	0.000165
ORF7b	15	A15A	gcC	gcT	2	9	B.1.429	0.000047
ORF7b	15	A15S	Gcc	Tcc	9	9	B.1.561	0.003573
ORF7b	15	A15del2	GCc	--c	8	8	All	0.000002
ORF7b	15	A15C	GCc	TGc	7	8	All	0.000001
ORF7b	15	A15C	GCC	TGT	1	8	All	0
ORF7b	15	A15del	GCC	---	8	8	AY.29	0.000126
ORF7b	15	A15S	Gcc	Tcc	8	8	AY.33	0.000534
ORF7b	15	A15del	GCC	---	8	8	AY.43	0.000035
ORF7b	15	A15A	gcC	gcA	8	8	B	0.001022
ORF7b	15	A15S	Gcc	Tcc	8	8	B.1.1.17	0.133333
ORF7b	15	A15del	GCC	---	8	8	B.1.1.519	0.000318
ORF7b	15	A15S	Gcc	Tcc	8	8	B.1.177.81	0.001515
ORF7b	15	A15A	gcC	gcT	7	8	B.1.351	0.000208
ORF7b	15	A15A	gcC	gcA	1	8	B.1.351	0.00003
ORF7b	15	A15S	Gcc	Tcc	8	8	B.1.617.1	0.001032
ORF7b	15	A15A	gcC	gcT	4	7		0.222222
ORF7b	15	A15I	GCC	ATT	4	7		0.222222
ORF7b	15	A15A	gcC	gcA	3	7		0.166667
ORF7b	15	A15I	GCc	ATc	2	7		0.111111
ORF7b	15	A15I	GCC	ATA	1	7		0.055556
ORF7b	15	A15S	Gcc	Tcc	7	7	AY.118	0.000439
ORF7b	15	A15S	Gcc	Tcc	7	7	AY.20	0.000272
ORF7b	15	A15T	Gcc	Acc	7	7	AY.25	0.000042
ORF7b	15	A15V	gCc	gTc	6	7	AY.3	0.00006
ORF7b	15	A15V	gCC	gTT	1	7	AY.3	0.00001
ORF7b	15	A15S	Gcc	Tcc	7	7	AY.35	0.001631
ORF7b	15	A15S	Gcc	Tcc	7	7	AY.4.5	0.000752
ORF7b	15	A15V	gCc	gTc	7	7	AY.5.3	0.002362
ORF7b	15	A15S	Gcc	Tcc	7	7	AY.7.2	0.003915
ORF7b	15	A15S	Gcc	Tcc	7	7	B.1.1.220	0.013011
ORF7b	15	A15S	Gcc	Tcc	7	7	B.1.1.222	0.001428
ORF7b	15	A15del	GCC	---	7	7	B.1.177	0.000092
ORF7b	15	A15A	gcC	gcT	7	7	B.1.177.60	0.001529
ORF7b	15	A15T	Gcc	Acc	7	7	B.1.2	0.000062
ORF7b	15	A15S	Gcc	Tcc	7	7	B.1.36.19	0.064815
ORF7b	15	A15del	GCC	---	7	7	B.1.424	0.056452
ORF7b	15	A15S	Gcc	Tcc	7	7	B.1.632	0.04698
ORF7b	15	A15A	gcC	gcA	7	7	B.4.1	0.132075
ORF7b	15	A15del1	Gcc	-cc	7	7	P.1	0.00011
ORF7b	15	A15S	Gcc	Tcc	7	7	P.2	0.001306
ORF7b	15	A15S	Gcc	Tcc	6	6	AY.117	0.000507
ORF7b	15	A15S	Gcc	Tcc	6	6	AY.120	0.000223
ORF7b	15	A15A	gcC	gcT	6	6	AY.46.6	0.000433
ORF7b	15	A15V	gCc	gTc	6	6	AY.75	0.000336
ORF7b	15	A15V	gCc	gTc	6	6	B.1	0.000055
ORF7b	15	A15del2	GCc	--c	6	6	B.1.1.7	0.000005
ORF7b	15	A15T	Gcc	Acc	6	6	B.1.160	0.000187
ORF7b	15	A15del	GCC	---	6	6	B.1.429	0.000141
ORF7b	15	A15S	Gcc	Tcc	6	6	B.1.596	0.000523
ORF7b	15	A15S	Gcc	Tcc	6	6	B.1.9	0.037037
ORF7b	15	A15T	GcC	AcT	2	5		0.111111
ORF7b	15	A15G	gCc	gGc	2	5		0.111111
ORF7b	15	A15G	gCC	gGA	2	5		0.111111
ORF7b	15	A15T	Gcc	Acc	2	5		0.111111
ORF7b	15	A15T	GcC	AcA	1	5		0.055556
ORF7b	15	A15G	gCC	gGT	1	5		0.055556
ORF7b	15	A15D	gCc	gAc	5	5	AY.25	0.00003
ORF7b	15	A15del	GCC	---	5	5	AY.26	0.000142
ORF7b	15	A15A	gcC	gcA	5	5	AY.29	0.000079
ORF7b	15	A15S	Gcc	Tcc	5	5	AY.3.1	0.000426
ORF7b	15	A15D	gCc	gAc	5	5	AY.4	0.000008
ORF7b	15	A15G	gCc	gGc	5	5	AY.5	0.000103
ORF7b	15	A15S	Gcc	Tcc	5	5	AY.69	0.000933
ORF7b	15	A15A	gcC	gcT	5	5	AY.95	0.003805
ORF7b	15	A15S	Gcc	Tcc	5	5	B.1.1.174	0.016892
ORF7b	15	A15S	Gcc	Tcc	5	5	B.1.1.28	0.001556
ORF7b	15	A15S	Gcc	Tcc	5	5	B.1.1.306	0.002192
ORF7b	15	A15C	GCc	TGc	5	5	B.1.1.70	0.001705
ORF7b	15	A15S	Gcc	Tcc	5	5	B.1.146	0.021186
ORF7b	15	A15S	Gcc	Tcc	5	5	B.1.232	0.002687
ORF7b	15	A15S	Gcc	Tcc	4	5	B.1.258	0.000266
ORF7b	15	A15S	GcC	TcA	1	5	B.1.258	0.000067
ORF7b	15	A15T	Gcc	Acc	5	5	B.1.351	0.000149
ORF7b	15	A15S	Gcc	Tcc	5	5	B.1.36.17	0.00247
ORF7b	15	A15S	Gcc	Tcc	5	5	B.1.609	0.002397
ORF7b	15	A15A	gcC	gcT	5	5	B.1.617.1	0.000645
ORF7b	15	A15T	Gcc	Acc	5	5	B.1.617.2	0.000019
ORF7b	15	A15del	GCC	---	5	5	B.1.621.1	0.002529
ORF7b	15	A15S	Gcc	Tcc	5	5	P.3	0.007974
ORF7b	15	A15F	GCc	TTc	2	4		0.111111
ORF7b	15	A15F	GCC	TTT	2	4		0.111111
ORF7b	15	A15S	Gcc	Tcc	4	4	A	0.001548
ORF7b	15	A15T	Gcc	Acc	4	4	AY.103	0.000025
ORF7b	15	A15A	gcC	gcT	4	4	AY.117	0.000338
ORF7b	15	A15del	GCC	---	4	4	AY.120	0.000149
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.121	0.000541
ORF7b	15	A15A	gcC	gcT	4	4	AY.121	0.000541
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.13	0.000644
ORF7b	15	A15A	gcC	gcT	2	4	AY.20	0.000078
ORF7b	15	A15A	gcC	gcG	1	4	AY.20	0.000039
ORF7b	15	A15A	gcC	gcA	1	4	AY.20	0.000039
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.23	0.000279
ORF7b	15	A15del	GCC	---	4	4	AY.3	0.00004
ORF7b	15	A15T	Gcc	Acc	4	4	AY.3	0.00004
ORF7b	15	A15A	gcC	gcA	2	4	AY.39.1	0.000079
ORF7b	15	A15A	gcC	gcT	2	4	AY.39.1	0.000079
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.4.2	0.000087
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.42	0.000161
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.46	0.000416
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.47	0.000124
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.6	0.000165
ORF7b	15	A15S	Gcc	Tcc	4	4	AY.61	0.000419
ORF7b	15	A15del	GCC	---	4	4	AY.66	0.004278
ORF7b	15	A15S	Gcc	Tcc	4	4	AZ.4	0.013423
ORF7b	15	A15del	GCC	---	4	4	B.1.1.214	0.000222
ORF7b	15	A15V	gCc	gTc	4	4	B.1.1.216	0.003562
ORF7b	15	A15S	Gcc	Tcc	4	4	B.1.1.63	0.001543
ORF7b	15	A15V	gCc	gTc	4	4	B.1.1.70	0.001364
ORF7b	15	A15V	gCc	gTc	4	4	B.1.160	0.000125
ORF7b	15	A15A	gcC	gcA	4	4	B.1.177.21	0.000306
ORF7b	15	A15A	gcC	gcA	4	4	B.1.177.73	0.002265
ORF7b	15	A15A	gcC	gcA	4	4	B.1.177.86	0.000734
ORF7b	15	A15del	GCC	---	4	4	B.1.177.86	0.000734
ORF7b	15	A15A	gcC	gcA	4	4	B.1.237	0.0199
ORF7b	15	A15S	Gcc	Tcc	4	4	B.1.36.16	0.005698
ORF7b	15	A15S	Gcc	Tcc	4	4	B.1.425	0.011976
ORF7b	15	A15V	gCc	gTc	4	4	B.1.525	0.000453
ORF7b	15	A15A	gcC	gcA	4	4	B.1.576	0.003626
ORF7b	15	A15S	Gcc	Tcc	4	4	C.35	0.003096
ORF7b	15	A15S	Gcc	Tcc	4	4	P.1.17	0.000647
ORF7b	15	A15S	Gcc	Tcc	4	4	P.7	0.017467
ORF7b	15	A15del	GCC	---	4	4	Q.8	0.00066
ORF7b	15	A15A	gcC	gcT	4	4	R.1	0.00036
ORF7b	15	A15C	GCc	TGc	2	3		0.111111
ORF7b	15	A15C	GCC	TGT	1	3		0.055556
ORF7b	15	A15N	GCc	AAc	3	3	All	0.000001
ORF7b	15	A15L	GCC	TTA	2	3	All	0
ORF7b	15	A15L	GCc	CTc	1	3	All	0
ORF7b	15	A15D	gCc	gAc	3	3	AY.103	0.000019
ORF7b	15	A15S	Gcc	Tcc	3	3	AY.104	0.005952
ORF7b	15	A15del	GCC	---	3	3	AY.118	0.000188
ORF7b	15	A15A	gcC	gcT	3	3	AY.120.2.1	0.001495
ORF7b	15	A15del	GCC	---	3	3	AY.121	0.000406
ORF7b	15	A15T	Gcc	Acc	3	3	AY.20	0.000117
ORF7b	15	A15A	gcC	gcT	3	3	AY.27	0.000194
ORF7b	15	A15A	gcC	gcT	2	3	AY.33	0.000134
ORF7b	15	A15A	gcC	gcA	1	3	AY.33	0.000067
ORF7b	15	A15S	Gcc	Tcc	3	3	AY.34	0.000291
ORF7b	15	A15A	gcC	gcA	2	3	AY.36	0.000296
ORF7b	15	A15A	gcC	gcT	1	3	AY.36	0.000148
ORF7b	15	A15del	GCC	---	3	3	AY.39	0.000074
ORF7b	15	A15T	Gcc	Acc	3	3	AY.43	0.000013
ORF7b	15	A15S	Gcc	Tcc	3	3	AY.45	0.000365
ORF7b	15	A15S	Gcc	Tcc	3	3	AY.46.4	0.000494
ORF7b	15	A15A	gcC	gcA	3	3	AY.6	0.000123
ORF7b	15	A15S	Gcc	Tcc	3	3	AY.71	0.001425
ORF7b	15	A15S	Gcc	Tcc	3	3	AY.80	0.003386
ORF7b	15	A15V	gCc	gTc	3	3	AY.90	0.002053
ORF7b	15	A15del	GCC	---	3	3	AY.98	0.000237
ORF7b	15	A15D	gCc	gAc	3	3	B.1	0.000027
ORF7b	15	A15V	gCc	gTc	2	3	B.1.1	0.000036
ORF7b	15	A15V	gCC	gTA	1	3	B.1.1	0.000018
ORF7b	15	A15del	GCC	---	3	3	B.1.1.159	0.014019
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.1.521	0.016043
ORF7b	15	A15A	gcC	gcA	3	3	B.1.1.70	0.001023
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.160	0.000094
ORF7b	15	A15A	gcC	gcA	2	3	B.1.177.7	0.00033
ORF7b	15	A15A	gcC	gcT	1	3	B.1.177.7	0.000165
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.177.75	0.003122
ORF7b	15	A15del1	Gcc	-cc	3	3	B.1.2	0.000026
ORF7b	15	A15V	gCc	gTc	2	3	B.1.221	0.000142
ORF7b	15	A15V	gCC	gTT	1	3	B.1.221	0.000071
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.234	0.000396
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.240	0.000647
ORF7b	15	A15V	gCC	gTT	2	3	B.1.243	0.000139
ORF7b	15	A15V	gCc	gTc	1	3	B.1.243	0.00007
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.311	0.000824
ORF7b	15	A15del	GCC	---	3	3	B.1.351	0.000089
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.36.8	0.003
ORF7b	15	A15A	gcC	gcA	3	3	B.1.411	0.011111
ORF7b	15	A15T	Gcc	Acc	3	3	B.1.466.2	0.001174
ORF7b	15	A15del	GCC	---	3	3	B.1.568	0.003333
ORF7b	15	A15A	gcC	gcA	3	3	B.1.590	0.013636
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.595	0.000783
ORF7b	15	A15A	gcC	gcA	3	3	B.1.597	0.013889
ORF7b	15	A15A	gcC	gcA	3	3	B.1.600	0.017544
ORF7b	15	A15V	gCc	gTc	3	3	B.1.617.2	0.000011
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.621	0.000266
ORF7b	15	A15S	Gcc	Tcc	3	3	B.1.91	0.006224
ORF7b	15	A15S	Gcc	Tcc	3	3	L.3	0.010638
ORF7b	15	A15S	Gcc	Tcc	3	3	P.1.11	0.030612
ORF7b	15	A15A	gcC	gcT	2	3	P.1.14	0.000096
ORF7b	15	A15A	gcC	gcG	1	3	P.1.14	0.000048
ORF7b	15	A15N	GCc	AAc	3	3	P.2	0.00056
ORF7b	15	A15S	Gcc	Tcc	3	3	Q.1	0.000379
ORF7b	15	A15V	gCc	gTc	3	3	Q.1	0.000379
ORF7b	15	A15D	gCc	gAc	2	2		0.111111
ORF7b	15	A15Y	GCc	TAc	2	2		0.111111
ORF7b	15	A15X	GCC	TGA	2	2		0.111111
ORF7b	15	A15del	GCC	---	2	2	A	0.000774
ORF7b	15	A15S	Gcc	Tcc	2	2	A.2.5	0.000998
ORF7b	15	A15V	gCc	gTc	2	2	A.25	0.036364
ORF7b	15	A15X	GCC	TGA	2	2	All	0
ORF7b	15	A15Y	GCc	TAc	2	2	All	0
ORF7b	15	A15A	gcC	gcT	2	2	AY.1	0.000791
ORF7b	15	A15del	GCC	---	2	2	AY.100	0.000092
ORF7b	15	A15del	GCC	---	2	2	AY.102	0.000053
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.116	0.000574
ORF7b	15	A15A	gcC	gcT	2	2	AY.116	0.000574
ORF7b	15	A15del	GCC	---	2	2	AY.119	0.000071
ORF7b	15	A15A	gcC	gcT	2	2	AY.120	0.000074
ORF7b	15	A15del	GCC	---	2	2	AY.120.2	0.002571
ORF7b	15	A15T	Gcc	Acc	2	2	AY.121	0.000271
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.14	0.000176
ORF7b	15	A15V	gCc	gTc	2	2	AY.25	0.000012
ORF7b	15	A15A	gcC	gcT	2	2	AY.26	0.000057
ORF7b	15	A15V	gCc	gTc	2	2	AY.29	0.000032
ORF7b	15	A15del	GCC	---	2	2	AY.39.1	0.000079
ORF7b	15	A15P	Gcc	Ccc	2	2	AY.4	0.000003
ORF7b	15	A15del	GCC	---	2	2	AY.4.2	0.000043
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.4.3	0.001684
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.4.4	0.000818
ORF7b	15	A15V	gCc	gTc	2	2	AY.43	0.000009
ORF7b	15	A15D	gCc	gAc	2	2	AY.43	0.000009
ORF7b	15	A15T	Gcc	Acc	1	2	AY.44	0.000006
ORF7b	15	A15T	GcC	AcT	1	2	AY.44	0.000006
ORF7b	15	A15del	GCC	---	2	2	AY.46.6	0.000144
ORF7b	15	A15A	gcC	gcT	1	2	AY.5	0.000021
ORF7b	15	A15A	gcC	gcA	1	2	AY.5	0.000021
ORF7b	15	A15T	Gcc	Acc	2	2	AY.5.3	0.000675
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.59	0.001059
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.60	0.001876
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.64	0.00119
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.75	0.000112
ORF7b	15	A15del	GCC	---	2	2	AY.75	0.000112
ORF7b	15	A15T	Gcc	Acc	2	2	AY.75.1	0.000361
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.86	0.00166
ORF7b	15	A15A	gcC	gcT	2	2	AY.9.2	0.000073
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.90	0.001369
ORF7b	15	A15S	Gcc	Tcc	2	2	AY.92	0.000575
ORF7b	15	A15V	gCc	gTc	2	2	AY.98.1	0.000097
ORF7b	15	A15del	GCC	---	2	2	AY.98.1	0.000097
ORF7b	15	A15A	gcC	gcA	2	2	AY.99.2	0.000184
ORF7b	15	A15G	gCc	gGc	1	2	B.1	0.000009
ORF7b	15	A15G	gCC	gGA	1	2	B.1	0.000009
ORF7b	15	A15T	Gcc	Acc	2	2	B.1.1	0.000036
ORF7b	15	A15L	GCc	CTc	1	2	B.1.1	0.000018
ORF7b	15	A15L	GCC	TTA	1	2	B.1.1	0.000018
ORF7b	15	A15A	gcC	gcA	2	2	B.1.1.153	0.002191
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.1.158	0.02439
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.1.171	0.007353
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.1.219	0.01
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.1.25	0.001137
ORF7b	15	A15del	GCC	---	2	2	B.1.1.25	0.001137
ORF7b	15	A15A	gcC	gcT	2	2	B.1.1.33	0.000842
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.1.369	0.000892
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.1.372	0.001377
ORF7b	15	A15A	gcC	gcA	2	2	B.1.1.409	0.005666
ORF7b	15	A15A	gcC	gcT	2	2	B.1.1.523	0.003125
ORF7b	15	A15del1	GCC	-NN	2	2	B.1.1.7	0.000002
ORF7b	15	A15del	GCC	---	2	2	B.1.177.2	0.009091
ORF7b	15	A15V	gCc	gTc	2	2	B.1.177.55	0.004662
ORF7b	15	A15A	gcC	gcA	2	2	B.1.177.6	0.001953
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.177.60	0.000437
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.177.86	0.000367
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.214.1	0.04
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.214.2	0.001199
ORF7b	15	A15F	GCc	TTc	1	2	B.1.221	0.000071
ORF7b	15	A15F	GCC	TTT	1	2	B.1.221	0.000071
ORF7b	15	A15T	Gcc	Acc	1	2	B.1.221	0.000071
ORF7b	15	A15T	GcC	AcA	1	2	B.1.221	0.000071
ORF7b	15	A15S	GcC	TcA	2	2	B.1.258.17	0.000208
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.279	0.001027
ORF7b	15	A15V	gCc	gTc	2	2	B.1.36.29	0.001035
ORF7b	15	A15del	GCC	---	2	2	B.1.36.33	0.015152
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.367	0.001585
ORF7b	15	A15del	GCC	---	2	2	B.1.367	0.001585
ORF7b	15	A15V	gCc	gTc	2	2	B.1.39	0.007812
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.398	0.005952
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.400	0.000858
ORF7b	15	A15del	GCC	---	2	2	B.1.416	0.002538
ORF7b	15	A15V	gCc	gTc	2	2	B.1.427	0.000101
ORF7b	15	A15V	gCc	gTc	2	2	B.1.429	0.000047
ORF7b	15	A15del1	Gcc	-cc	2	2	B.1.429	0.000047
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.499	0.002101
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.564	0.000852
ORF7b	15	A15A	gcC	gcA	2	2	B.1.627	0.00404
ORF7b	15	A15S	Gcc	Tcc	1	2	B.1.627	0.00202
ORF7b	15	A15S	GcC	TcA	1	2	B.1.627	0.00202
ORF7b	15	A15S	Gcc	Tcc	2	2	B.1.9.5	0.011364
ORF7b	15	A15del	GCC	---	2	2	B.6	0.00182
ORF7b	15	A15S	Gcc	Tcc	2	2	C.16	0.002121
ORF7b	15	A15A	gcC	gcT	2	2	C.37	0.000232
ORF7b	15	A15T	Gcc	Acc	2	2	P.1	0.000032
ORF7b	15	A15del	GCC	---	2	2	P.1.14	0.000096
ORF7b	15	A15del	GCC	---	2	2	P.1.15	0.000465
ORF7b	15	A15S	Gcc	Tcc	2	2	P.6	0.006289
ORF7b	15	A15S	Gcc	Tcc	2	2	Q.8	0.00033
ORF7b	15	A15L	GCC	TTA	1	1		0.055556
ORF7b	15	A15del	GCC	---	1	1	A.1	0.000282
ORF7b	15	A15del	GCC	---	1	1	A.2.2	0.001689
ORF7b	15	A15S	Gcc	Tcc	1	1	A.2.4	0.003367
ORF7b	15	A15A	gcC	gcT	1	1	A.2.5	0.000499
ORF7b	15	A15V	gCc	gTc	1	1	A.23.1	0.000704
ORF7b	15	A15S	Gcc	Tcc	1	1	AA.1	0.007246
ORF7b	15	A15S	Gcc	Tcc	1	1	AD.2	0.000219
ORF7b	15	A15S	Gcc	Tcc	1	1	AE.8	0.000489
ORF7b	15	A15E	gCC	gAA	1	1	All	0
ORF7b	15	A15A	gcC	gcT	1	1	AY.100	0.000046
ORF7b	15	A15A	gcC	gcT	1	1	AY.105	0.000643
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.106	0.000335
ORF7b	15	A15del	GCC	---	1	1	AY.108	0.001103
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.109	0.00074
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.110	0.000113
ORF7b	15	A15A	gcC	gcT	1	1	AY.111	0.000183
ORF7b	15	A15del	GCC	---	1	1	AY.111	0.000183
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.113	0.000142
ORF7b	15	A15del1	Gcc	-cc	1	1	AY.113	0.000142
ORF7b	15	A15T	Gcc	Acc	1	1	AY.114	0.000231
ORF7b	15	A15del	GCC	---	1	1	AY.117	0.000085
ORF7b	15	A15V	gCc	gTc	1	1	AY.118	0.000063
ORF7b	15	A15V	gCc	gTc	1	1	AY.119	0.000035
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.12	0.000316
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.120.1	0.000321
ORF7b	15	A15del	GCC	---	1	1	AY.16	0.00038
ORF7b	15	A15del	GCC	---	1	1	AY.2	0.000356
ORF7b	15	A15V	gCc	gTc	1	1	AY.20	0.000039
ORF7b	15	A15T	Gcc	Acc	1	1	AY.23	0.00007
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.23.1	0.000417
ORF7b	15	A15del1	Gcc	-cc	1	1	AY.25	0.000006
ORF7b	15	A15T	Gcc	Acc	1	1	AY.29	0.000016
ORF7b	15	A15del	GCC	---	1	1	AY.29.1	0.000221
ORF7b	15	A15D	gCc	gAc	1	1	AY.3	0.00001
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.30	0.000396
ORF7b	15	A15del	GCC	---	1	1	AY.34	0.000097
ORF7b	15	A15V	gCc	gTc	1	1	AY.35	0.000233
ORF7b	15	A15T	Gcc	Acc	1	1	AY.36	0.000148
ORF7b	15	A15A	gcC	gcT	1	1	AY.38	0.000499
ORF7b	15	A15A	gcC	gcA	1	1	AY.39	0.000025
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.39.1	0.00004
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.4.2.1	0.000149
ORF7b	15	A15T	Gcc	Acc	1	1	AY.40	0.000964
ORF7b	15	A15A	gcC	gcT	1	1	AY.42	0.00004
ORF7b	15	A15P	GcC	CcT	1	1	AY.43	0.000004
ORF7b	15	A15V	gCc	gTc	1	1	AY.44	0.000006
ORF7b	15	A15del	GCC	---	1	1	AY.46.3	0.000934
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.46.5	0.000198
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.46.6	0.000072
ORF7b	15	A15D	gCc	gAc	1	1	AY.47	0.000031
ORF7b	15	A15del	GCC	---	1	1	AY.5	0.000021
ORF7b	15	A15A	gcC	gcT	1	1	AY.5.3	0.000337
ORF7b	15	A15A	gcC	gcA	1	1	AY.52	0.000814
ORF7b	15	A15del	GCC	---	1	1	AY.53	0.000288
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.54	0.000095
ORF7b	15	A15T	Gcc	Acc	1	1	AY.61	0.000105
ORF7b	15	A15A	gcC	gcT	1	1	AY.61	0.000105
ORF7b	15	A15A	gcC	gcA	1	1	AY.7.1	0.000113
ORF7b	15	A15A	gcC	gcA	1	1	AY.7.2	0.000559
ORF7b	15	A15del	GCC	---	1	1	AY.70	0.000209
ORF7b	15	A15del	GCC	---	1	1	AY.74	0.000116
ORF7b	15	A15A	gcC	gcT	1	1	AY.75	0.000056
ORF7b	15	A15D	gCc	gAc	1	1	AY.80	0.001129
ORF7b	15	A15F	GCc	TTc	1	1	AY.82	0.001357
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.85	0.000427
ORF7b	15	A15A	gcC	gcT	1	1	AY.9	0.000068
ORF7b	15	A15D	gCc	gAc	1	1	AY.9	0.000068
ORF7b	15	A15A	gcC	gcA	1	1	AY.9.1	0.000084
ORF7b	15	A15del	GCC	---	1	1	AY.9.2	0.000037
ORF7b	15	A15P	Gcc	Ccc	1	1	AY.9.2	0.000037
ORF7b	15	A15V	gCc	gTc	1	1	AY.9.2	0.000037
ORF7b	15	A15V	gCc	gTc	1	1	AY.92	0.000287
ORF7b	15	A15T	Gcc	Acc	1	1	AY.95	0.000761
ORF7b	15	A15V	gCc	gTc	1	1	AY.95	0.000761
ORF7b	15	A15V	gCc	gTc	1	1	AY.98	0.000079
ORF7b	15	A15T	Gcc	Acc	1	1	AY.98	0.000079
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.99	0.001049
ORF7b	15	A15S	Gcc	Tcc	1	1	AY.99.2	0.000092
ORF7b	15	A15del	GCC	---	1	1	AZ.2	0.000821
ORF7b	15	A15T	Gcc	Acc	1	1	B	0.000128
ORF7b	15	A15del	GCC	---	1	1	B	0.000128
ORF7b	15	A15V	gCc	gTc	1	1	B	0.000128
ORF7b	15	A15D	gCc	gAc	1	1	B	0.000128
ORF7b	15	A15E	gCC	gAA	1	1	B.1	0.000009
ORF7b	15	A15D	gCc	gAc	1	1	B.1.1	0.000018
ORF7b	15	A15del2	GCc	--c	1	1	B.1.1	0.000018
ORF7b	15	A15F	GCc	TTc	1	1	B.1.1	0.000018
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.1.1	0.000327
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.117	0.009709
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.121	0.002427
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.161	0.003534
ORF7b	15	A15V	gCc	gTc	1	1	B.1.1.174	0.003378
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.189	0.001513
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.214	0.000055
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.231	0.003096
ORF7b	15	A15T	GcC	AcA	1	1	B.1.1.237	0.005405
ORF7b	15	A15del	GCC	---	1	1	B.1.1.253	0.002506
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.254	0.011236
ORF7b	15	A15del	GCC	---	1	1	B.1.1.265	0.003155
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.269	0.001353
ORF7b	15	A15V	gCc	gTc	1	1	B.1.1.282	0.011628
ORF7b	15	A15A	gcC	gcA	1	1	B.1.1.282	0.011628
ORF7b	15	A15del	GCC	---	1	1	B.1.1.284	0.000107
ORF7b	15	A15A	gcC	gcA	1	1	B.1.1.297	0.002237
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.1.305	0.003861
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.316	0.000925
ORF7b	15	A15V	gCc	gTc	1	1	B.1.1.316	0.000925
ORF7b	15	A15A	gcC	gcT	1	1	B.1.1.317	0.000412
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.318	0.000302
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.334	0.016393
ORF7b	15	A15A	gcC	gcT	1	1	B.1.1.348	0.000796
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.348	0.000796
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.363	0.005988
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.1.385	0.004464
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.387	0.058824
ORF7b	15	A15A	gcC	gcA	1	1	B.1.1.39	0.00051
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.398	0.003226
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.409	0.002833
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.1.413	0.006897
ORF7b	15	A15D	gCc	gAc	1	1	B.1.1.416	0.000905
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.432	0.001266
ORF7b	15	A15V	gCc	gTc	1	1	B.1.1.442	0.018519
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.46	0.004367
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.464	0.001473
ORF7b	15	A15A	gcC	gcT	1	1	B.1.1.50	0.000679
ORF7b	15	A15A	gcC	gcT	1	1	B.1.1.63	0.000386
ORF7b	15	A15F	GCc	TTc	1	1	B.1.1.7	0.000001
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.1.83	0.00271
ORF7b	15	A15del	GCC	---	1	1	B.1.110.3	0.000718
ORF7b	15	A15D	gCc	gAc	1	1	B.1.112	0.005181
ORF7b	15	A15A	gcC	gcA	1	1	B.1.120	0.007692
ORF7b	15	A15A	gcC	gcA	1	1	B.1.142	0.002899
ORF7b	15	A15A	gcC	gcA	1	1	B.1.146	0.004237
ORF7b	15	A15A	gcC	gcA	1	1	B.1.149	0.003425
ORF7b	15	A15A	gcC	gcA	1	1	B.1.157	0.002985
ORF7b	15	A15del	GCC	---	1	1	B.1.160	0.000031
ORF7b	15	A15I	GCc	ATc	1	1	B.1.160	0.000031
ORF7b	15	A15P	Gcc	Ccc	1	1	B.1.177	0.000013
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.177	0.000013
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.177.12	0.000152
ORF7b	15	A15A	gcC	gcT	1	1	B.1.177.17	0.000821
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.177.21	0.000076
ORF7b	15	A15A	gcC	gcA	1	1	B.1.177.28	0.007407
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.177.32	0.00135
ORF7b	15	A15A	gcC	gcA	1	1	B.1.177.4	0.000211
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.177.44	0.000519
ORF7b	15	A15A	gcC	gcT	1	1	B.1.177.57	0.000281
ORF7b	15	A15del	GCC	---	1	1	B.1.177.57	0.000281
ORF7b	15	A15A	gcC	gcT	1	1	B.1.177.62	0.001192
ORF7b	15	A15G	gCc	gGc	1	1	B.1.177.63	0.002703
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.177.87	0.000728
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.179	0.003759
ORF7b	15	A15D	gCc	gAc	1	1	B.1.2	0.000009
ORF7b	15	A15P	Gcc	Ccc	1	1	B.1.2	0.000009
ORF7b	15	A15I	GCc	ATc	1	1	B.1.221	0.000071
ORF7b	15	A15A	gcC	gcA	1	1	B.1.221.1	0.002907
ORF7b	15	A15T	GcC	AcA	1	1	B.1.221.4	0.004167
ORF7b	15	A15D	gCc	gAc	1	1	B.1.232	0.000537
ORF7b	15	A15A	gcC	gcG	1	1	B.1.232	0.000537
ORF7b	15	A15del	GCC	---	1	1	B.1.234	0.000132
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.235	0.002519
ORF7b	15	A15A	gcC	gcA	1	1	B.1.240	0.000216
ORF7b	15	A15A	gcC	gcA	1	1	B.1.242	0.018868
ORF7b	15	A15del1	Gcc	-cc	1	1	B.1.243	0.00007
ORF7b	15	A15del	GCC	---	1	1	B.1.243	0.00007
ORF7b	15	A15del1	Gcc	-cc	1	1	B.1.247	0.014925
ORF7b	15	A15T	GcC	AcA	1	1	B.1.258	0.000067
ORF7b	15	A15A	gcC	gcA	1	1	B.1.293	0.0125
ORF7b	15	A15A	gcC	gcA	1	1	B.1.3	0.002618
ORF7b	15	A15A	gcC	gcA	1	1	B.1.301	0.005917
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.305	0.002151
ORF7b	15	A15A	gcC	gcT	1	1	B.1.311	0.000275
ORF7b	15	A15A	gcC	gcT	1	1	B.1.319	0.003049
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.324	0.001605
ORF7b	15	A15A	gcC	gcT	1	1	B.1.348	0.018182
ORF7b	15	A15A	gcC	gcT	1	1	B.1.349	0.000715
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.351.2	0.000303
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.36.1	0.00114
ORF7b	15	A15del	GCC	---	1	1	B.1.36.10	0.004785
ORF7b	15	A15A	gcC	gcA	1	1	B.1.36.10	0.004785
ORF7b	15	A15G	gCc	gGc	1	1	B.1.36.19	0.009259
ORF7b	15	A15del	GCC	---	1	1	B.1.36.22	0.001208
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.36.22	0.001208
ORF7b	15	A15del	GCC	---	1	1	B.1.36.25	0.002208
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.36.29	0.000517
ORF7b	15	A15I	GCc	ATc	1	1	B.1.36.29	0.000517
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.36.7	0.004
ORF7b	15	A15A	gcC	gcA	1	1	B.1.362	0.001541
ORF7b	15	A15del	GCC	---	1	1	B.1.370	0.008
ORF7b	15	A15A	gcC	gcA	1	1	B.1.375	0.00082
ORF7b	15	A15A	gcC	gcA	1	1	B.1.380	0.006623
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.389	0.001002
ORF7b	15	A15A	gcC	gcT	1	1	B.1.399	0.001934
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.404	0.001302
ORF7b	15	A15A	gcC	gcA	1	1	B.1.406	0.006061
ORF7b	15	A15S	GcC	TcA	1	1	B.1.411	0.003704
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.416	0.001269
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.416.1	0.001563
ORF7b	15	A15S	GCc	AGc	1	1	B.1.417	0.028571
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.417	0.028571
ORF7b	15	A15G	gCc	gGc	1	1	B.1.417	0.028571
ORF7b	15	A15del	GCC	---	1	1	B.1.427	0.00005
ORF7b	15	A15F	GCc	TTc	1	1	B.1.427	0.00005
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.427	0.00005
ORF7b	15	A15A	gcC	gcT	1	1	B.1.427	0.00005
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.428	0.00102
ORF7b	15	A15A	gcC	gcA	1	1	B.1.432	0.011236
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.438.1	0.000107
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.456	0.003268
ORF7b	15	A15del	GCC	---	1	1	B.1.466.2	0.000391
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.466.2	0.000391
ORF7b	15	A15del	GCC	---	1	1	B.1.468	0.005714
ORF7b	15	A15A	gcC	gcT	1	1	B.1.511	0.034483
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.525	0.000113
ORF7b	15	A15del	GCC	---	1	1	B.1.525	0.000113
ORF7b	15	A15D	gCc	gAc	1	1	B.1.525	0.000113
ORF7b	15	A15V	gCc	gTc	1	1	B.1.526	0.000024
ORF7b	15	A15del	GCC	---	1	1	B.1.556	0.007519
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.560	0.00463
ORF7b	15	A15D	gCc	gAc	1	1	B.1.568	0.001111
ORF7b	15	A15A	gcC	gcT	1	1	B.1.575	0.000303
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.576	0.000907
ORF7b	15	A15V	gCc	gTc	1	1	B.1.582	0.000491
ORF7b	15	A15del	GCC	---	1	1	B.1.582	0.000491
ORF7b	15	A15P	Gcc	Ccc	1	1	B.1.596	0.000087
ORF7b	15	A15A	gcC	gcA	1	1	B.1.596	0.000087
ORF7b	15	A15T	Gcc	Acc	1	1	B.1.596	0.000087
ORF7b	15	A15del	GCC	---	1	1	B.1.596	0.000087
ORF7b	15	A15A	gcC	gcA	1	1	B.1.599	0.00365
ORF7b	15	A15A	gcC	gcA	1	1	B.1.601	0.030303
ORF7b	15	A15del1	Gcc	-cc	1	1	B.1.617.1	0.000129
ORF7b	15	A15A	gcC	gcT	1	1	B.1.621	0.000089
ORF7b	15	A15A	gcC	gcA	1	1	B.1.623	0.000536
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.625	0.002353
ORF7b	15	A15del	GCC	---	1	1	B.1.630	0.005236
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.636	0.006711
ORF7b	15	A15S	Gcc	Tcc	1	1	B.1.93	0.000934
ORF7b	15	A15V	gCc	gTc	1	1	B.23	0.002924
ORF7b	15	A15A	gcC	gcT	1	1	B.3	0.000831
ORF7b	15	A15S	Gcc	Tcc	1	1	B.4	0.002208
ORF7b	15	A15T	Gcc	Acc	1	1	B.40	0.000364
ORF7b	15	A15A	gcC	gcT	1	1	C.18	0.002591
ORF7b	15	A15S	Gcc	Tcc	1	1	C.23	0.005814
ORF7b	15	A15D	gCc	gAc	1	1	C.39	0.018868
ORF7b	15	A15S	Gcc	Tcc	1	1	D.2	0.000075
ORF7b	15	A15V	gCc	gTc	1	1	D.2	0.000075
ORF7b	15	A15del	GCC	---	1	1	N.5	0.001767
ORF7b	15	A15V	gCc	gTc	1	1	P.1	0.000016
ORF7b	15	A15del1	Gcc	-cc	1	1	P.1.13	0.000898
ORF7b	15	A15A	gcC	gcT	1	1	P.1.15	0.000232
ORF7b	15	A15del	GCC	---	1	1	P.1.16	0.000374
ORF7b	15	A15del2	GCc	--c	1	1	Q.1	0.000126
ORF7b	15	A15S	Gcc	Tcc	1	1	Q.4	0.000455
ORF7b	15	A15S	Gcc	Tcc	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.