CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 14 | L14del | del | TTA | --- | 2878 | 2878 | 1 | 27795-27797 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 14 | L14del | TTA | --- | 2878 | 2878 | All | 0.00055 |
ORF7b | 14 | L14del | TTA | --- | 948 | 948 | B.1.620 | 0.896878 |
ORF7b | 14 | L14del | TTA | --- | 414 | 414 | AY.4 | 0.000644 |
ORF7b | 14 | L14del | TTA | --- | 226 | 226 | B.1.1.7 | 0.000202 |
ORF7b | 14 | L14del | TTA | --- | 113 | 113 | B.1.632 | 0.758389 |
ORF7b | 14 | L14del | TTA | --- | 95 | 95 | B.1.36 | 0.013861 |
ORF7b | 14 | L14del | TTA | --- | 85 | 85 | AY.3 | 0.000845 |
ORF7b | 14 | L14del | TTA | --- | 46 | 46 | P.1 | 0.000725 |
ORF7b | 14 | L14del | TTA | --- | 45 | 45 | B.1 | 0.000412 |
ORF7b | 14 | L14del | TTA | --- | 44 | 44 | AY.47 | 0.001369 |
ORF7b | 14 | L14del | TTA | --- | 44 | 44 | B.1.2 | 0.000387 |
ORF7b | 14 | L14del | TTA | --- | 42 | 42 | AY.43 | 0.000186 |
ORF7b | 14 | L14del | TTA | --- | 41 | 41 | AY.25 | 0.000247 |
ORF7b | 14 | L14del | TTA | --- | 41 | 41 | B.1.617.2 | 0.000154 |
ORF7b | 14 | L14del | TTA | --- | 40 | 40 | B.1.526 | 0.00094 |
ORF7b | 14 | L14del | TTA | --- | 38 | 38 | AY.44 | 0.000231 |
ORF7b | 14 | L14del | TTA | --- | 36 | 36 | B.1.221 | 0.002557 |
ORF7b | 14 | L14del | TTA | --- | 33 | 33 | AY.98.1 | 0.001598 |
ORF7b | 14 | L14del | TTA | --- | 32 | 32 | B.1.177 | 0.000421 |
ORF7b | 14 | L14del | TTA | --- | 29 | 29 | AY.9.1 | 0.002428 |
ORF7b | 14 | L14del | TTA | --- | 27 | 27 | B.1.1 | 0.00049 |
ORF7b | 14 | L14del | TTA | --- | 26 | 26 | N.10 | 0.764706 |
ORF7b | 14 | L14del | TTA | --- | 22 | 22 | AY.103 | 0.000137 |
ORF7b | 14 | L14del | TTA | --- | 21 | 21 | B.1.1.316 | 0.019426 |
ORF7b | 14 | L14del | TTA | --- | 15 | 15 | AY.20 | 0.000583 |
ORF7b | 14 | L14del | TTA | --- | 14 | 14 | AY.113 | 0.001993 |
ORF7b | 14 | L14del | TTA | --- | 12 | 12 | B.1.1.121 | 0.029126 |
ORF7b | 14 | L14del | TTA | --- | 12 | 12 | B.1.1.519 | 0.000477 |
ORF7b | 14 | L14del | TTA | --- | 10 | 10 | B.1.243 | 0.000696 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.102 | 0.000239 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.118 | 0.000564 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.29 | 0.000142 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.98 | 0.000711 |
ORF7b | 14 | L14del | TTA | --- | 8 | 8 | B.1.258 | 0.000532 |
ORF7b | 14 | L14del | TTA | --- | 7 | 7 | AY.39 | 0.000173 |
ORF7b | 14 | L14del | TTA | --- | 7 | 7 | B.1.424 | 0.056452 |
ORF7b | 14 | L14del | TTA | --- | 6 | 6 | AY.26 | 0.00017 |
ORF7b | 14 | L14del | TTA | --- | 6 | 6 | B.1.1.176 | 0.002636 |
ORF7b | 14 | L14del | TTA | --- | 6 | 6 | B.1.429 | 0.000141 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.1.506 | 0.185185 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.351 | 0.000149 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.351.2 | 0.001513 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.621.1 | 0.002529 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | C.16 | 0.005302 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.120 | 0.000149 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.66 | 0.004278 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.9 | 0.00027 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.177.86 | 0.000734 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.438.1 | 0.000429 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.456 | 0.013072 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | Q.1 | 0.000505 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | Q.8 | 0.00066 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | A | 0.001161 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | AY.121 | 0.000406 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | AY.5 | 0.000062 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | AY.78 | 0.004622 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.1.159 | 0.014019 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.177.57 | 0.000843 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.279 | 0.001541 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.416 | 0.003807 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.568 | 0.003333 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.117 | 0.000169 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.42 | 0.00008 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.53 | 0.000575 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.58 | 0.001815 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AZ.2 | 0.001642 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.119 | 0.068966 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.216 | 0.001781 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.243 | 0.008163 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.284 | 0.000215 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.387 | 0.117647 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.111 | 0.00235 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.177.15 | 0.001262 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.177.2 | 0.009091 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.36.33 | 0.015152 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.36.8 | 0.002 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.369 | 0.00057 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.470 | 0.002809 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.509 | 0.001732 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.577 | 0.001375 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.623 | 0.001073 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.628 | 0.000705 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.6 | 0.00182 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | C.37 | 0.000232 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.106 | 0.000335 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.35 | 0.000233 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.41 | 0.000294 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.70 | 0.000209 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.83 | 0.001724 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B | 0.000128 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.117 | 0.009709 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.141 | 0.002012 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.253 | 0.002506 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.389 | 0.006061 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.398 | 0.003226 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.169 | 0.014925 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.333 | 0.010526 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.346 | 0.001311 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.25 | 0.002208 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.370 | 0.008 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.556 | 0.007519 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.619.1 | 0.000641 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.91 | 0.002075 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | C.36 | 0.000911 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | D.2 | 0.000075 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | N.5 | 0.001767 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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