CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 14 | L14del | del | TTA | --- | 2878 | 2878 | 1 | 27795-27797 | |
ORF7b | 14 | L14S | nonsyn | tTa | tCa | 1293 | 1293 | 1 | 27795-27797 | |
ORF7b | 14 | L14L | syn | ttA | ttG | 900 | 662 | 0.735556 | 27795-27797 | |
ORF7b | 14 | L14L | syn | Tta | Cta | 900 | 228 | 0.253333 | 27795-27797 | |
ORF7b | 14 | L14L | syn | TtA | CtT | 900 | 9 | 0.01 | 27795-27797 | |
ORF7b | 14 | L14L | syn | TtA | CtG | 900 | 1 | 0.00111111 | 27795-27797 | |
ORF7b | 14 | L14F | nonsyn | ttA | ttC | 377 | 332 | 0.880637 | 27795-27797 | |
ORF7b | 14 | L14F | nonsyn | ttA | ttT | 377 | 45 | 0.119363 | 27795-27797 | |
ORF7b | 14 | L14del1 | del | Tta | -ta | 118 | 74 | 0.627119 | 27795-27797 | |
ORF7b | 14 | L14del1 | del | ttA | tt- | 118 | 38 | 0.322034 | 27795-27797 | |
ORF7b | 14 | L14del1 | del | TTA | -NN | 118 | 2 | 0.0169492 | 27795-27797 | |
ORF7b | 14 | L14del1 | del | TTa | -Na | 118 | 1 | 0.00847458 | 27795-27797 | |
ORF7b | 14 | L14del1 | del | TTa | -Aa | 118 | 1 | 0.00847458 | 27795-27797 | |
ORF7b | 14 | L14del1 | del | TtA | -tN | 118 | 1 | 0.00847458 | 27795-27797 | |
ORF7b | 14 | L14del1 | del | TTA | CC- | 118 | 1 | 0.00847458 | 27795-27797 | |
ORF7b | 14 | L14del2 | del | tTA | t-- | 88 | 76 | 0.863636 | 27795-27797 | |
ORF7b | 14 | L14del2 | del | TTa | --a | 88 | 12 | 0.136364 | 27795-27797 | |
ORF7b | 14 | L14I | nonsyn | Tta | Ata | 32 | 29 | 0.90625 | 27795-27797 | |
ORF7b | 14 | L14I | nonsyn | TtA | AtT | 32 | 3 | 0.09375 | 27795-27797 | |
ORF7b | 14 | L14X | nonsyn | tTa | tAa | 15 | 9 | 0.6 | 27795-27797 | |
ORF7b | 14 | L14X | nonsyn | tTa | tGa | 15 | 6 | 0.4 | 27795-27797 | |
ORF7b | 14 | L14V | nonsyn | Tta | Gta | 7 | 7 | 1 | 27795-27797 | |
ORF7b | 14 | L14C | nonsyn | tTA | tGT | 6 | 5 | 0.833333 | 27795-27797 | |
ORF7b | 14 | L14C | nonsyn | tTA | tGC | 6 | 1 | 0.166667 | 27795-27797 | |
ORF7b | 14 | L14E | nonsyn | TTa | GAa | 2 | 2 | 1 | 27795-27797 | |
ORF7b | 14 | L14K | nonsyn | TTa | AAa | 2 | 2 | 1 | 27795-27797 | |
ORF7b | 14 | L14Y | nonsyn | tTA | tAT | 2 | 2 | 1 | 27795-27797 | |
ORF7b | 14 | L14N | nonsyn | TTA | AAT | 2 | 2 | 1 | 27795-27797 | |
ORF7b | 14 | L14Q | nonsyn | TTa | CAa | 1 | 1 | 1 | 27795-27797 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 14 | L14del | TTA | --- | 2878 | 2878 | All | 0.00055 |
ORF7b | 14 | L14S | tTa | tCa | 1293 | 1293 | All | 0.000247 |
ORF7b | 14 | L14del | TTA | --- | 948 | 948 | B.1.620 | 0.896878 |
ORF7b | 14 | L14L | ttA | ttG | 662 | 900 | All | 0.000127 |
ORF7b | 14 | L14L | Tta | Cta | 228 | 900 | All | 0.000044 |
ORF7b | 14 | L14L | TtA | CtT | 9 | 900 | All | 0.000002 |
ORF7b | 14 | L14L | TtA | CtG | 1 | 900 | All | 0 |
ORF7b | 14 | L14S | tTa | tCa | 472 | 472 | B.1.525 | 0.053412 |
ORF7b | 14 | L14del | TTA | --- | 414 | 414 | AY.4 | 0.000644 |
ORF7b | 14 | L14F | ttA | ttC | 332 | 377 | All | 0.000063 |
ORF7b | 14 | L14F | ttA | ttT | 45 | 377 | All | 0.000009 |
ORF7b | 14 | L14F | ttA | ttC | 326 | 326 | B.1.1.7 | 0.000292 |
ORF7b | 14 | L14L | ttA | ttG | 214 | 298 | B.1.1.7 | 0.000192 |
ORF7b | 14 | L14L | Tta | Cta | 77 | 298 | B.1.1.7 | 0.000069 |
ORF7b | 14 | L14L | TtA | CtT | 7 | 298 | B.1.1.7 | 0.000006 |
ORF7b | 14 | L14del | TTA | --- | 226 | 226 | B.1.1.7 | 0.000202 |
ORF7b | 14 | L14S | tTa | tCa | 204 | 204 | B.1.617.2 | 0.000768 |
ORF7b | 14 | L14L | ttA | ttG | 171 | 184 | AY.4 | 0.000266 |
ORF7b | 14 | L14L | Tta | Cta | 13 | 184 | AY.4 | 0.00002 |
ORF7b | 14 | L14S | tTa | tCa | 170 | 170 | B.1.630 | 0.890052 |
ORF7b | 14 | L14L | ttA | ttG | 133 | 135 | AY.103 | 0.000826 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 135 | AY.103 | 0.000012 |
ORF7b | 14 | L14S | tTa | tCa | 125 | 125 | AY.4 | 0.000195 |
ORF7b | 14 | L14del1 | Tta | -ta | 74 | 118 | All | 0.000014 |
ORF7b | 14 | L14del1 | ttA | tt- | 38 | 118 | All | 0.000007 |
ORF7b | 14 | L14del1 | TTA | -NN | 2 | 118 | All | 0 |
ORF7b | 14 | L14del1 | TtA | -tN | 1 | 118 | All | 0 |
ORF7b | 14 | L14del1 | TTa | -Aa | 1 | 118 | All | 0 |
ORF7b | 14 | L14del1 | TTA | CC- | 1 | 118 | All | 0 |
ORF7b | 14 | L14del1 | TTa | -Na | 1 | 118 | All | 0 |
ORF7b | 14 | L14del | TTA | --- | 113 | 113 | B.1.632 | 0.758389 |
ORF7b | 14 | L14S | tTa | tCa | 103 | 103 | AY.102 | 0.002731 |
ORF7b | 14 | L14del | TTA | --- | 95 | 95 | B.1.36 | 0.013861 |
ORF7b | 14 | L14del2 | tTA | t-- | 76 | 88 | All | 0.000015 |
ORF7b | 14 | L14del2 | TTa | --a | 12 | 88 | All | 0.000002 |
ORF7b | 14 | L14del | TTA | --- | 85 | 85 | AY.3 | 0.000845 |
ORF7b | 14 | L14del1 | Tta | -ta | 54 | 54 | B.1.1.7 | 0.000048 |
ORF7b | 14 | L14L | Tta | Cta | 45 | 50 | B.1.2 | 0.000396 |
ORF7b | 14 | L14L | ttA | ttG | 5 | 50 | B.1.2 | 0.000044 |
ORF7b | 14 | L14del | TTA | --- | 46 | 46 | P.1 | 0.000725 |
ORF7b | 14 | L14del | TTA | --- | 45 | 45 | B.1 | 0.000412 |
ORF7b | 14 | L14del | TTA | --- | 44 | 44 | AY.47 | 0.001369 |
ORF7b | 14 | L14del | TTA | --- | 44 | 44 | B.1.2 | 0.000387 |
ORF7b | 14 | L14del | TTA | --- | 42 | 42 | AY.43 | 0.000186 |
ORF7b | 14 | L14del | TTA | --- | 41 | 41 | AY.25 | 0.000247 |
ORF7b | 14 | L14del | TTA | --- | 41 | 41 | B.1.617.2 | 0.000154 |
ORF7b | 14 | L14del | TTA | --- | 40 | 40 | B.1.526 | 0.00094 |
ORF7b | 14 | L14del | TTA | --- | 38 | 38 | AY.44 | 0.000231 |
ORF7b | 14 | L14del | TTA | --- | 36 | 36 | B.1.221 | 0.002557 |
ORF7b | 14 | L14S | tTa | tCa | 35 | 35 | B.1.1.7 | 0.000031 |
ORF7b | 14 | L14L | ttA | ttG | 28 | 35 | B.1.617.2 | 0.000105 |
ORF7b | 14 | L14L | Tta | Cta | 7 | 35 | B.1.617.2 | 0.000026 |
ORF7b | 14 | L14del | TTA | --- | 33 | 33 | AY.98.1 | 0.001598 |
ORF7b | 14 | L14I | Tta | Ata | 29 | 32 | All | 0.000006 |
ORF7b | 14 | L14I | TtA | AtT | 3 | 32 | All | 0.000001 |
ORF7b | 14 | L14del | TTA | --- | 32 | 32 | B.1.177 | 0.000421 |
ORF7b | 14 | L14del | TTA | --- | 29 | 29 | AY.9.1 | 0.002428 |
ORF7b | 14 | L14del | TTA | --- | 27 | 27 | B.1.1 | 0.00049 |
ORF7b | 14 | L14del | TTA | --- | 26 | 26 | N.10 | 0.764706 |
ORF7b | 14 | L14S | tTa | tCa | 23 | 23 | AY.44 | 0.00014 |
ORF7b | 14 | L14del | TTA | --- | 22 | 22 | AY.103 | 0.000137 |
ORF7b | 14 | L14del1 | ttA | tt- | 22 | 22 | AY.3 | 0.000219 |
ORF7b | 14 | L14L | Tta | Cta | 13 | 22 | AY.43 | 0.000058 |
ORF7b | 14 | L14L | ttA | ttG | 9 | 22 | AY.43 | 0.00004 |
ORF7b | 14 | L14del | TTA | --- | 21 | 21 | B.1.1.316 | 0.019426 |
ORF7b | 14 | L14S | tTa | tCa | 19 | 19 | B.1.526 | 0.000447 |
ORF7b | 14 | L14S | tTa | tCa | 17 | 17 | AY.43 | 0.000075 |
ORF7b | 14 | L14L | ttA | ttG | 14 | 17 | AY.44 | 0.000085 |
ORF7b | 14 | L14L | Tta | Cta | 3 | 17 | AY.44 | 0.000018 |
ORF7b | 14 | L14X | tTa | tAa | 9 | 15 | All | 0.000002 |
ORF7b | 14 | L14X | tTa | tGa | 6 | 15 | All | 0.000001 |
ORF7b | 14 | L14del | TTA | --- | 15 | 15 | AY.20 | 0.000583 |
ORF7b | 14 | L14del2 | tTA | t-- | 13 | 15 | B.1.596 | 0.001133 |
ORF7b | 14 | L14del2 | TTa | --a | 2 | 15 | B.1.596 | 0.000174 |
ORF7b | 14 | L14del | TTA | --- | 14 | 14 | AY.113 | 0.001993 |
ORF7b | 14 | L14L | ttA | ttG | 9 | 14 | B.1 | 0.000082 |
ORF7b | 14 | L14L | Tta | Cta | 5 | 14 | B.1 | 0.000046 |
ORF7b | 14 | L14I | Tta | Ata | 13 | 13 | B.1.2 | 0.000114 |
ORF7b | 14 | L14F | ttA | ttT | 13 | 13 | B.1.617.2 | 0.000049 |
ORF7b | 14 | L14L | ttA | ttG | 12 | 12 | AY.9 | 0.000811 |
ORF7b | 14 | L14del | TTA | --- | 12 | 12 | B.1.1.121 | 0.029126 |
ORF7b | 14 | L14del1 | Tta | -ta | 11 | 12 | B.1.1.354 | 0.048246 |
ORF7b | 14 | L14del1 | TTA | -NN | 1 | 12 | B.1.1.354 | 0.004386 |
ORF7b | 14 | L14del | TTA | --- | 12 | 12 | B.1.1.519 | 0.000477 |
ORF7b | 14 | L14L | Tta | Cta | 12 | 12 | B.1.429 | 0.000282 |
ORF7b | 14 | L14S | tTa | tCa | 11 | 11 | B.1.1.306 | 0.004822 |
ORF7b | 14 | L14del | TTA | --- | 10 | 10 | B.1.243 | 0.000696 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.102 | 0.000239 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.118 | 0.000564 |
ORF7b | 14 | L14S | tTa | tCa | 9 | 9 | AY.25 | 0.000054 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.29 | 0.000142 |
ORF7b | 14 | L14del | TTA | --- | 9 | 9 | AY.98 | 0.000711 |
ORF7b | 14 | L14del2 | tTA | t-- | 8 | 9 | B.1.1.7 | 0.000007 |
ORF7b | 14 | L14del2 | TTa | --a | 1 | 9 | B.1.1.7 | 0.000001 |
ORF7b | 14 | L14L | Tta | Cta | 8 | 8 | AY.29 | 0.000126 |
ORF7b | 14 | L14del2 | tTA | t-- | 8 | 8 | AY.4 | 0.000012 |
ORF7b | 14 | L14del | TTA | --- | 8 | 8 | B.1.258 | 0.000532 |
ORF7b | 14 | L14V | Tta | Gta | 7 | 7 | All | 0.000001 |
ORF7b | 14 | L14L | Tta | Cta | 5 | 7 | AY.102 | 0.000133 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 7 | AY.102 | 0.000053 |
ORF7b | 14 | L14S | tTa | tCa | 7 | 7 | AY.105 | 0.004502 |
ORF7b | 14 | L14del | TTA | --- | 7 | 7 | AY.39 | 0.000173 |
ORF7b | 14 | L14del | TTA | --- | 7 | 7 | B.1.424 | 0.056452 |
ORF7b | 14 | L14I | TtA | AtT | 3 | 6 | 0.166667 | |
ORF7b | 14 | L14I | Tta | Ata | 3 | 6 | 0.166667 | |
ORF7b | 14 | L14C | tTA | tGT | 5 | 6 | All | 0.000001 |
ORF7b | 14 | L14C | tTA | tGC | 1 | 6 | All | 0 |
ORF7b | 14 | L14del2 | tTA | t-- | 6 | 6 | AY.25 | 0.000036 |
ORF7b | 14 | L14del | TTA | --- | 6 | 6 | AY.26 | 0.00017 |
ORF7b | 14 | L14L | ttA | ttG | 6 | 6 | AY.29.1 | 0.001323 |
ORF7b | 14 | L14del | TTA | --- | 6 | 6 | B.1.1.176 | 0.002636 |
ORF7b | 14 | L14S | tTa | tCa | 6 | 6 | B.1.177.84 | 0.04 |
ORF7b | 14 | L14del | TTA | --- | 6 | 6 | B.1.429 | 0.000141 |
ORF7b | 14 | L14del2 | tTA | t-- | 5 | 6 | B.1.617.2 | 0.000019 |
ORF7b | 14 | L14del2 | TTa | --a | 1 | 6 | B.1.617.2 | 0.000004 |
ORF7b | 14 | L14F | ttA | ttT | 4 | 5 | 0.222222 | |
ORF7b | 14 | L14F | ttA | ttC | 1 | 5 | 0.055556 | |
ORF7b | 14 | L14S | tTa | tCa | 5 | 5 | AY.100 | 0.00023 |
ORF7b | 14 | L14L | ttA | ttG | 4 | 5 | AY.25 | 0.000024 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 5 | AY.25 | 0.000006 |
ORF7b | 14 | L14S | tTa | tCa | 5 | 5 | AY.39 | 0.000124 |
ORF7b | 14 | L14L | Tta | Cta | 5 | 5 | AY.5 | 0.000103 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.1.506 | 0.185185 |
ORF7b | 14 | L14L | ttA | ttG | 5 | 5 | B.1.1.70 | 0.001705 |
ORF7b | 14 | L14S | tTa | tCa | 5 | 5 | B.1.160 | 0.000156 |
ORF7b | 14 | L14L | ttA | ttG | 4 | 5 | B.1.243 | 0.000278 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 5 | B.1.243 | 0.00007 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.351 | 0.000149 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.351.2 | 0.001513 |
ORF7b | 14 | L14F | ttA | ttT | 5 | 5 | B.1.429 | 0.000118 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | B.1.621.1 | 0.002529 |
ORF7b | 14 | L14del | TTA | --- | 5 | 5 | C.16 | 0.005302 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.120 | 0.000149 |
ORF7b | 14 | L14F | ttA | ttT | 4 | 4 | AY.4 | 0.000006 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF7b | 14 | L14del1 | ttA | tt- | 4 | 4 | AY.44 | 0.000024 |
ORF7b | 14 | L14S | tTa | tCa | 4 | 4 | AY.64 | 0.002381 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.66 | 0.004278 |
ORF7b | 14 | L14S | tTa | tCa | 4 | 4 | AY.84 | 0.00175 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | AY.9 | 0.00027 |
ORF7b | 14 | L14S | tTa | tCa | 4 | 4 | AY.98 | 0.000316 |
ORF7b | 14 | L14S | tTa | tCa | 4 | 4 | B.1 | 0.000037 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF7b | 14 | L14I | Tta | Ata | 4 | 4 | B.1.1.7 | 0.000004 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.177.86 | 0.000734 |
ORF7b | 14 | L14del1 | ttA | tt- | 4 | 4 | B.1.2 | 0.000035 |
ORF7b | 14 | L14del2 | tTA | t-- | 2 | 4 | B.1.2 | 0.000018 |
ORF7b | 14 | L14del2 | TTa | --a | 2 | 4 | B.1.2 | 0.000018 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 4 | B.1.427 | 0.000101 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 4 | B.1.427 | 0.00005 |
ORF7b | 14 | L14L | TtA | CtT | 1 | 4 | B.1.427 | 0.00005 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.438.1 | 0.000429 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | B.1.456 | 0.013072 |
ORF7b | 14 | L14S | tTa | tCa | 4 | 4 | B.1.595 | 0.001044 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | Q.1 | 0.000505 |
ORF7b | 14 | L14del | TTA | --- | 4 | 4 | Q.8 | 0.00066 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | A | 0.001161 |
ORF7b | 14 | L14del2 | tTA | t-- | 3 | 3 | AY.103 | 0.000019 |
ORF7b | 14 | L14S | tTa | tCa | 3 | 3 | AY.111 | 0.000549 |
ORF7b | 14 | L14del2 | tTA | t-- | 3 | 3 | AY.111 | 0.000549 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | AY.121 | 0.000406 |
ORF7b | 14 | L14del1 | Tta | -ta | 1 | 3 | AY.25 | 0.000006 |
ORF7b | 14 | L14del1 | TTa | -Aa | 1 | 3 | AY.25 | 0.000006 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 3 | AY.25 | 0.000006 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 3 | AY.26 | 0.000057 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 3 | AY.26 | 0.000028 |
ORF7b | 14 | L14L | ttA | ttG | 3 | 3 | AY.3 | 0.00003 |
ORF7b | 14 | L14del2 | tTA | t-- | 3 | 3 | AY.3 | 0.00003 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 3 | AY.3.1 | 0.000171 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 3 | AY.3.1 | 0.000085 |
ORF7b | 14 | L14S | tTa | tCa | 3 | 3 | AY.4.2 | 0.000065 |
ORF7b | 14 | L14I | Tta | Ata | 3 | 3 | AY.44 | 0.000018 |
ORF7b | 14 | L14S | tTa | tCa | 3 | 3 | AY.46 | 0.000312 |
ORF7b | 14 | L14S | tTa | tCa | 3 | 3 | AY.5 | 0.000062 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | AY.5 | 0.000062 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | AY.78 | 0.004622 |
ORF7b | 14 | L14S | tTa | tCa | 3 | 3 | AY.82 | 0.004071 |
ORF7b | 14 | L14del2 | tTA | t-- | 3 | 3 | B.1.1 | 0.000054 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 3 | B.1.1 | 0.000036 |
ORF7b | 14 | L14L | TtA | CtG | 1 | 3 | B.1.1 | 0.000018 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.1.159 | 0.014019 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7b | 14 | L14del2 | TTa | --a | 3 | 3 | B.1.1.37 | 0.000579 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.177.57 | 0.000843 |
ORF7b | 14 | L14L | ttA | ttG | 3 | 3 | B.1.214.2 | 0.001799 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.279 | 0.001541 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 3 | B.1.351 | 0.000059 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 3 | B.1.351 | 0.00003 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.416 | 0.003807 |
ORF7b | 14 | L14del2 | tTA | t-- | 3 | 3 | B.1.429 | 0.000071 |
ORF7b | 14 | L14del1 | Tta | -ta | 3 | 3 | B.1.560 | 0.013889 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.568 | 0.003333 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF7b | 14 | L14X | tTa | tAa | 3 | 3 | C.36.3.1 | 0.008152 |
ORF7b | 14 | L14del | TTA | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF7b | 14 | L14E | TTa | GAa | 2 | 2 | 0.111111 | |
ORF7b | 14 | L14Y | tTA | tAT | 2 | 2 | 0.111111 | |
ORF7b | 14 | L14N | TTA | AAT | 2 | 2 | 0.111111 | |
ORF7b | 14 | L14K | TTa | AAa | 2 | 2 | 0.111111 | |
ORF7b | 14 | L14X | tTa | tAa | 2 | 2 | 0.111111 | |
ORF7b | 14 | L14V | Tta | Gta | 2 | 2 | 0.111111 | |
ORF7b | 14 | L14L | ttA | ttG | 1 | 2 | A | 0.000387 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 2 | A | 0.000387 |
ORF7b | 14 | L14S | tTa | tCa | 2 | 2 | AE.6 | 0.076923 |
ORF7b | 14 | L14N | TTA | AAT | 2 | 2 | All | 0 |
ORF7b | 14 | L14Y | tTA | tAT | 2 | 2 | All | 0 |
ORF7b | 14 | L14E | TTa | GAa | 2 | 2 | All | 0 |
ORF7b | 14 | L14K | TTa | AAa | 2 | 2 | All | 0 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7b | 14 | L14F | ttA | ttT | 2 | 2 | AY.100 | 0.000092 |
ORF7b | 14 | L14S | tTa | tCa | 2 | 2 | AY.103 | 0.000012 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.117 | 0.000169 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 14 | L14S | tTa | tCa | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF7b | 14 | L14F | ttA | ttT | 2 | 2 | AY.14 | 0.000176 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | AY.24 | 0.000862 |
ORF7b | 14 | L14S | tTa | tCa | 2 | 2 | AY.26 | 0.000057 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7b | 14 | L14S | tTa | tCa | 2 | 2 | AY.34.1 | 0.00102 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | AY.39.1 | 0.000079 |
ORF7b | 14 | L14del1 | Tta | -ta | 1 | 2 | AY.4 | 0.000002 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 2 | AY.4 | 0.000002 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.42 | 0.00008 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | AY.45 | 0.000243 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.53 | 0.000575 |
ORF7b | 14 | L14S | tTa | tCa | 2 | 2 | AY.55 | 0.001835 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.58 | 0.001815 |
ORF7b | 14 | L14F | ttA | ttT | 2 | 2 | AY.7 | 0.000392 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | AY.75 | 0.000112 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | AY.98 | 0.000158 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | AZ.2 | 0.001642 |
ORF7b | 14 | L14del1 | Tta | -ta | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 14 | L14F | ttA | ttC | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 14 | L14del1 | TTA | CC- | 1 | 2 | B.1.1 | 0.000018 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.119 | 0.068966 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.216 | 0.001781 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.243 | 0.008163 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | B.1.1.284 | 0.000215 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.284 | 0.000215 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.1.387 | 0.117647 |
ORF7b | 14 | L14del2 | tTA | t-- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7b | 14 | L14X | tTa | tAa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7b | 14 | L14V | Tta | Gta | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.111 | 0.00235 |
ORF7b | 14 | L14del2 | TTa | --a | 2 | 2 | B.1.177 | 0.000026 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.177.15 | 0.001262 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.177.2 | 0.009091 |
ORF7b | 14 | L14S | tTa | tCa | 2 | 2 | B.1.2 | 0.000018 |
ORF7b | 14 | L14F | ttA | ttT | 2 | 2 | B.1.221 | 0.000142 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 2 | B.1.234 | 0.000132 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 2 | B.1.234 | 0.000132 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | B.1.258 | 0.000133 |
ORF7b | 14 | L14F | ttA | ttT | 2 | 2 | B.1.320 | 0.002491 |
ORF7b | 14 | L14C | tTA | tGT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.36.33 | 0.015152 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.36.8 | 0.002 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.369 | 0.00057 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.470 | 0.002809 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.509 | 0.001732 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | B.1.561 | 0.000794 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.577 | 0.001375 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | B.1.596 | 0.000174 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.623 | 0.001073 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.1.628 | 0.000705 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | B.6 | 0.00182 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | B.6.6 | 0.001778 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | C.37 | 0.000232 |
ORF7b | 14 | L14del2 | tTA | t-- | 2 | 2 | P.1 | 0.000032 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 2 | P.1.17 | 0.000162 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 2 | P.1.17 | 0.000162 |
ORF7b | 14 | L14del | TTA | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | Q.1 | 0.000253 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | Q.8 | 0.00033 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | A | 0.000387 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7b | 14 | L14V | Tta | Gta | 1 | 1 | A.2.4 | 0.003367 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | A.27 | 0.001656 |
ORF7b | 14 | L14V | Tta | Gta | 1 | 1 | A.28 | 0.002646 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | A.5 | 0.001923 |
ORF7b | 14 | L14Q | TTa | CAa | 1 | 1 | All | 0 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.10 | 0.00053 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 14 | L14I | Tta | Ata | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.106 | 0.000335 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.110 | 0.000113 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.116 | 0.000287 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.117 | 0.000085 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | AY.119 | 0.000035 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.120.1 | 0.000321 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.13 | 0.000161 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 14 | L14I | Tta | Ata | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7b | 14 | L14X | tTa | tGa | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 14 | L14del1 | Tta | -ta | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.29 | 0.000016 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF7b | 14 | L14X | tTa | tAa | 1 | 1 | AY.29.1 | 0.000221 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.3.1 | 0.000085 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.35 | 0.000233 |
ORF7b | 14 | L14del1 | TTa | -Na | 1 | 1 | AY.35 | 0.000233 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 14 | L14L | TtA | CtT | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 14 | L14F | ttA | ttC | 1 | 1 | AY.37 | 0.000316 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.4.3 | 0.000842 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | AY.41 | 0.000294 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.41 | 0.000294 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 14 | L14C | tTA | tGT | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.46 | 0.000104 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.46.3 | 0.000934 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 14 | L14X | tTa | tGa | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.48 | 0.000465 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.5.4 | 0.000277 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.59 | 0.00053 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.70 | 0.000209 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | AY.79 | 0.001211 |
ORF7b | 14 | L14C | tTA | tGC | 1 | 1 | AY.82 | 0.001357 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.83 | 0.001724 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 1 | AY.92 | 0.000287 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | AY.92 | 0.000287 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | AY.98 | 0.000079 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B | 0.000128 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.117 | 0.009709 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.141 | 0.002012 |
ORF7b | 14 | L14I | Tta | Ata | 1 | 1 | B.1.1.153 | 0.001095 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.1.202 | 0.076923 |
ORF7b | 14 | L14del1 | Tta | -ta | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.253 | 0.002506 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7b | 14 | L14del2 | TTa | --a | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.389 | 0.006061 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.398 | 0.003226 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.169 | 0.014925 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7b | 14 | L14del1 | TTA | -NN | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF7b | 14 | L14V | Tta | Gta | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.203 | 0.0625 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 14 | L14I | Tta | Ata | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.333 | 0.010526 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.346 | 0.001311 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | B.1.351 | 0.00003 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.356 | 0.001727 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.36 | 0.000146 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.36.25 | 0.002208 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.370 | 0.008 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.408 | 0.00369 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 14 | L14C | tTA | tGT | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 14 | L14X | tTa | tGa | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 14 | L14C | tTA | tGT | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 14 | L14X | tTa | tGa | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 14 | L14F | ttA | ttC | 1 | 1 | B.1.438 | 0.006536 |
ORF7b | 14 | L14del2 | tTA | t-- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 14 | L14X | tTa | tGa | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.556 | 0.007519 |
ORF7b | 14 | L14Q | TTa | CAa | 1 | 1 | B.1.560 | 0.00463 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 1 | B.1.588 | 0.00091 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 14 | L14del1 | Tta | -ta | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 14 | L14I | Tta | Ata | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.619 | 0.000871 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.619.1 | 0.000641 |
ORF7b | 14 | L14del1 | ttA | tt- | 1 | 1 | B.1.620 | 0.000946 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 14 | L14F | ttA | ttT | 1 | 1 | B.1.632 | 0.006711 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | B.1.634 | 0.003425 |
ORF7b | 14 | L14X | tTa | tAa | 1 | 1 | B.1.637 | 0.000073 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | B.1.91 | 0.002075 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | C.36 | 0.000911 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | D.2 | 0.000075 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | N.5 | 0.001767 |
ORF7b | 14 | L14S | tTa | tCa | 1 | 1 | P.1 | 0.000016 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | P.1 | 0.000016 |
ORF7b | 14 | L14F | ttA | ttC | 1 | 1 | P.1 | 0.000016 |
ORF7b | 14 | L14X | tTa | tGa | 1 | 1 | P.1 | 0.000016 |
ORF7b | 14 | L14I | Tta | Ata | 1 | 1 | P.1.1 | 0.000318 |
ORF7b | 14 | L14F | ttA | ttC | 1 | 1 | P.1.1 | 0.000318 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | P.1.14 | 0.000048 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7b | 14 | L14del1 | TtA | -tN | 1 | 1 | P.1.7 | 0.000319 |
ORF7b | 14 | L14del | TTA | --- | 1 | 1 | Y.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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