CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 13 | F13del2 | del | TTt | --t | 5115 | 4792 | 0.936852 | 27792-27794 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 13 | F13del2 | TTt | --t | 4792 | 5115 | All | 0.000917 |
ORF7b | 13 | F13del2 | TTt | --t | 1675 | 1675 | AY.120 | 0.062275 |
ORF7b | 13 | F13del2 | TTt | --t | 859 | 873 | AY.4 | 0.001337 |
ORF7b | 13 | F13del2 | TTt | --t | 415 | 426 | B.1.1.7 | 0.000372 |
ORF7b | 13 | F13del2 | TTt | --t | 293 | 294 | B.1 | 0.002684 |
ORF7b | 13 | F13del2 | TTt | --t | 108 | 124 | AY.25 | 0.00065 |
ORF7b | 13 | F13del2 | TTt | --t | 94 | 116 | B.1.617.2 | 0.000354 |
ORF7b | 13 | F13del2 | TTt | --t | 93 | 94 | AY.43 | 0.000412 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 93 | B.1.36 | 0.000584 |
ORF7b | 13 | F13del2 | TTt | --t | 76 | 76 | C.1.2 | 0.323404 |
ORF7b | 13 | F13del2 | TTt | --t | 73 | 73 | B.1.525 | 0.008261 |
ORF7b | 13 | F13del2 | TTt | --t | 61 | 62 | P.1 | 0.000961 |
ORF7b | 13 | F13del2 | TTt | --t | 55 | 56 | AY.3 | 0.000547 |
ORF7b | 13 | F13del2 | TTt | --t | 17 | 55 | AY.47 | 0.000529 |
ORF7b | 13 | F13del2 | TTt | --t | 52 | 52 | AY.29 | 0.00082 |
ORF7b | 13 | F13del2 | TTt | --t | 48 | 50 | B.1.2 | 0.000423 |
ORF7b | 13 | F13del2 | TTt | --t | 48 | 48 | B.1.221 | 0.00341 |
ORF7b | 13 | F13del2 | TTt | --t | 40 | 43 | AY.44 | 0.000243 |
ORF7b | 13 | F13del2 | TTt | --t | 38 | 38 | AY.42 | 0.001529 |
ORF7b | 13 | F13del2 | TTt | --t | 38 | 38 | B.1.177.33 | 0.0625 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 37 | B.1.526 | 0.000212 |
ORF7b | 13 | F13del2 | TTt | --t | 36 | 36 | AY.39 | 0.00089 |
ORF7b | 13 | F13del2 | TTt | --t | 34 | 35 | AY.103 | 0.000211 |
ORF7b | 13 | F13del2 | TTt | --t | 34 | 34 | AY.46.6 | 0.002455 |
ORF7b | 13 | F13del2 | TTt | --t | 29 | 30 | AY.4.2 | 0.000629 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 30 | AY.9.1 | 0.000167 |
ORF7b | 13 | F13del2 | TTt | --t | 30 | 30 | B.1.1.269 | 0.040595 |
ORF7b | 13 | F13del2 | TTt | --t | 25 | 28 | B.1.429 | 0.000588 |
ORF7b | 13 | F13del2 | TTt | --t | 25 | 25 | AY.99.2 | 0.002304 |
ORF7b | 13 | F13del2 | TTt | --t | 11 | 23 | B.1.1 | 0.0002 |
ORF7b | 13 | F13del2 | TTt | --t | 17 | 17 | R.1 | 0.00153 |
ORF7b | 13 | F13del2 | TTt | --t | 16 | 16 | B.1.1.241 | 0.033126 |
ORF7b | 13 | F13del2 | TTt | --t | 16 | 16 | B.1.243 | 0.001113 |
ORF7b | 13 | F13del2 | TTt | --t | 11 | 15 | B.1.177 | 0.000145 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.1.519 | 0.000556 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.214.2 | 0.008393 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.596 | 0.00122 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.637 | 0.001023 |
ORF7b | 13 | F13del2 | TTt | --t | 13 | 13 | AY.102 | 0.000345 |
ORF7b | 13 | F13del2 | TTt | --t | 12 | 12 | AY.5 | 0.000248 |
ORF7b | 13 | F13del2 | TTt | --t | 11 | 11 | B.1.1.1 | 0.003594 |
ORF7b | 13 | F13del2 | TTt | --t | 10 | 10 | AY.14 | 0.00088 |
ORF7b | 13 | F13del2 | TTt | --t | 10 | 10 | B.1.177.81 | 0.001893 |
ORF7b | 13 | F13del2 | TTt | --t | 10 | 10 | B.1.279 | 0.005136 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 9 | AY.20 | 0.00035 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 9 | AY.54 | 0.000858 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 9 | B.1.177.21 | 0.000688 |
ORF7b | 13 | F13del2 | TTt | --t | 8 | 8 | AY.113 | 0.001139 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 8 | AY.119 | 0.000212 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 7 | AY.26 | 0.000113 |
ORF7b | 13 | F13del2 | TTt | --t | 7 | 7 | AY.34 | 0.000679 |
ORF7b | 13 | F13del2 | TTt | --t | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF7b | 13 | F13del2 | TTt | --t | 7 | 7 | B.1.524 | 0.009845 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | AY.110 | 0.000676 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 6 | AY.117 | 0.000423 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | AY.120.1 | 0.001926 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | AY.98.1 | 0.000291 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | B.1.1.240 | 0.028169 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 5 | AY.107 | 0.00233 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 5 | AY.9 | 0.000338 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 5 | B.1.610 | 0.01773 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 4 | AY.100 | 0.000138 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | AY.6 | 0.000165 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.1.306 | 0.001754 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.1.318 | 0.001207 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.210 | 0.008529 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.91 | 0.008299 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | C.36 | 0.003643 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | K.3 | 0.024691 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.3.1 | 0.000256 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.33 | 0.0002 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.36 | 0.000445 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.4.5 | 0.000322 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.62 | 0.001307 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.75.1 | 0.000541 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.1.232 | 0.005445 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.1.311 | 0.001074 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.1.70 | 0.001023 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.369 | 0.000856 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.567 | 0.01 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.9.5 | 0.017045 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | A | 0.000774 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | A.2 | 0.001324 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.109 | 0.001479 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.121 | 0.000135 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.16 | 0.00038 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.23 | 0.000139 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.39.1 | 0.00004 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.45 | 0.000243 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.55 | 0.001835 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.61 | 0.00021 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.73 | 0.001331 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.74 | 0.000116 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.75 | 0.000056 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.88 | 0.001768 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.1.192 | 0.004619 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.1.28 | 0.000622 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.1.284 | 0.000107 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.1.304 | 0.005618 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.160 | 0.000031 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.177.5 | 0.002484 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.177.77 | 0.001452 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.351 | 0.00003 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.366 | 0.009756 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.427 | 0.000101 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.466.2 | 0.000391 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | C.36.3.1 | 0.005435 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | C.37 | 0.000232 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | P.1.17 | 0.000324 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | P.2 | 0.000373 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | A.1 | 0.000282 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | A.2.5 | 0.000499 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.101 | 0.00049 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.105 | 0.000643 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.118 | 0.000063 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.24 | 0.000431 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.34.1 | 0.00051 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.4.1 | 0.000737 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.4.4 | 0.000409 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.46.5 | 0.000198 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.5.3 | 0.000337 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.52 | 0.000814 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.67 | 0.000464 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.7.1 | 0.000113 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.81 | 0.001992 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.84 | 0.000437 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AZ.1 | 0.000867 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.170 | 0.001247 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.219 | 0.005 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.234 | 0.012048 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.243 | 0.004082 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.41 | 0.0025 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.58 | 0.001332 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.214.3 | 0.007143 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.219 | 0.009434 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.234 | 0.000132 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.298 | 0.002114 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.340 | 0.004292 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.36.39 | 0.002217 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.361 | 0.001289 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.521 | 0.004975 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.561 | 0.000397 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.620 | 0.000946 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.621 | 0.000089 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.623 | 0.000536 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.88.1 | 0.004808 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.3 | 0.000831 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.40 | 0.000364 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | N.5 | 0.001767 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | P.1.1 | 0.000318 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | P.1.7 | 0.000319 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | Q.1 | 0.000126 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | Q.4 | 0.000455 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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