CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 13 | F13del2 | del | TTt | --t | 5115 | 4792 | 0.936852 | 27792-27794 | |
ORF7b | 13 | F13del2 | del | tTT | t-- | 5115 | 293 | 0.0572825 | 27792-27794 | |
ORF7b | 13 | F13del2 | del | TTT | --N | 5115 | 30 | 0.0058651 | 27792-27794 | |
ORF7b | 13 | F13del | del | TTT | --- | 2341 | 2341 | 1 | 27792-27794 | |
ORF7b | 13 | F13L | nonsyn | Ttt | Ctt | 1905 | 1866 | 0.979528 | 27792-27794 | |
ORF7b | 13 | F13L | nonsyn | ttT | ttA | 1905 | 23 | 0.0120735 | 27792-27794 | |
ORF7b | 13 | F13L | nonsyn | ttT | ttG | 1905 | 12 | 0.00629921 | 27792-27794 | |
ORF7b | 13 | F13L | nonsyn | TtT | CtC | 1905 | 2 | 0.00104987 | 27792-27794 | |
ORF7b | 13 | F13L | nonsyn | TtT | CtG | 1905 | 2 | 0.00104987 | 27792-27794 | |
ORF7b | 13 | F13del1 | del | Ttt | -tt | 1549 | 1205 | 0.777921 | 27792-27794 | |
ORF7b | 13 | F13del1 | del | ttT | tt- | 1549 | 327 | 0.211104 | 27792-27794 | |
ORF7b | 13 | F13del1 | del | TTT | -NN | 1549 | 8 | 0.00516462 | 27792-27794 | |
ORF7b | 13 | F13del1 | del | TTt | -Nt | 1549 | 8 | 0.00516462 | 27792-27794 | |
ORF7b | 13 | F13del1 | del | TTt | -At | 1549 | 1 | 0.000645578 | 27792-27794 | |
ORF7b | 13 | F13F | syn | ttT | ttC | 443 | 443 | 1 | 27792-27794 | |
ORF7b | 13 | F13S | nonsyn | tTt | tCt | 136 | 132 | 0.970588 | 27792-27794 | |
ORF7b | 13 | F13S | nonsyn | TTt | AGt | 136 | 2 | 0.0147059 | 27792-27794 | |
ORF7b | 13 | F13S | nonsyn | TTT | AGC | 136 | 2 | 0.0147059 | 27792-27794 | |
ORF7b | 13 | F13I | nonsyn | Ttt | Att | 50 | 45 | 0.9 | 27792-27794 | |
ORF7b | 13 | F13I | nonsyn | TtT | AtA | 50 | 3 | 0.06 | 27792-27794 | |
ORF7b | 13 | F13I | nonsyn | TtT | AtC | 50 | 2 | 0.04 | 27792-27794 | |
ORF7b | 13 | F13V | nonsyn | Ttt | Gtt | 24 | 23 | 0.958333 | 27792-27794 | |
ORF7b | 13 | F13V | nonsyn | TtT | GtG | 24 | 1 | 0.0416667 | 27792-27794 | |
ORF7b | 13 | F13Y | nonsyn | tTt | tAt | 12 | 10 | 0.833333 | 27792-27794 | |
ORF7b | 13 | F13Y | nonsyn | tTT | tAC | 12 | 2 | 0.166667 | 27792-27794 | |
ORF7b | 13 | F13C | nonsyn | tTt | tGt | 10 | 8 | 0.8 | 27792-27794 | |
ORF7b | 13 | F13C | nonsyn | tTT | tGC | 10 | 2 | 0.2 | 27792-27794 | |
ORF7b | 13 | F13R | nonsyn | TTT | CGG | 9 | 2 | 0.222222 | 27792-27794 | |
ORF7b | 13 | F13R | nonsyn | TTT | AGG | 9 | 2 | 0.222222 | 27792-27794 | |
ORF7b | 13 | F13R | nonsyn | TTT | CGC | 9 | 2 | 0.222222 | 27792-27794 | |
ORF7b | 13 | F13R | nonsyn | TTt | CGt | 9 | 2 | 0.222222 | 27792-27794 | |
ORF7b | 13 | F13R | nonsyn | TTT | AGA | 9 | 1 | 0.111111 | 27792-27794 | |
ORF7b | 13 | F13N | nonsyn | TTt | AAt | 6 | 4 | 0.666667 | 27792-27794 | |
ORF7b | 13 | F13N | nonsyn | TTT | AAC | 6 | 2 | 0.333333 | 27792-27794 | |
ORF7b | 13 | F13A | nonsyn | TTt | GCt | 5 | 5 | 1 | 27792-27794 | |
ORF7b | 13 | F13H | nonsyn | TTT | CAC | 5 | 3 | 0.6 | 27792-27794 | |
ORF7b | 13 | F13H | nonsyn | TTt | CAt | 5 | 2 | 0.4 | 27792-27794 | |
ORF7b | 13 | F13X | nonsyn | tTT | tAG | 3 | 2 | 0.666667 | 27792-27794 | |
ORF7b | 13 | F13K | nonsyn | TTT | AAG | 3 | 2 | 0.666667 | 27792-27794 | |
ORF7b | 13 | F13K | nonsyn | TTT | AAA | 3 | 1 | 0.333333 | 27792-27794 | |
ORF7b | 13 | F13X | nonsyn | tTT | tAA | 3 | 1 | 0.333333 | 27792-27794 | |
ORF7b | 13 | F13W | nonsyn | tTT | tGG | 2 | 2 | 1 | 27792-27794 | |
ORF7b | 13 | F13Q | nonsyn | TTT | CAG | 2 | 2 | 1 | 27792-27794 | |
ORF7b | 13 | F13M | nonsyn | TtT | AtG | 2 | 2 | 1 | 27792-27794 | |
ORF7b | 13 | F13P | nonsyn | TTt | CCt | 1 | 1 | 1 | 27792-27794 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 13 | F13del2 | TTt | --t | 4792 | 5115 | All | 0.000917 |
ORF7b | 13 | F13del2 | tTT | t-- | 293 | 5115 | All | 0.000056 |
ORF7b | 13 | F13del2 | TTT | --N | 30 | 5115 | All | 0.000006 |
ORF7b | 13 | F13del | TTT | --- | 2341 | 2341 | All | 0.000448 |
ORF7b | 13 | F13L | Ttt | Ctt | 1866 | 1905 | All | 0.000357 |
ORF7b | 13 | F13L | ttT | ttA | 23 | 1905 | All | 0.000004 |
ORF7b | 13 | F13L | ttT | ttG | 12 | 1905 | All | 0.000002 |
ORF7b | 13 | F13L | TtT | CtC | 2 | 1905 | All | 0 |
ORF7b | 13 | F13L | TtT | CtG | 2 | 1905 | All | 0 |
ORF7b | 13 | F13del2 | TTt | --t | 1675 | 1675 | AY.120 | 0.062275 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1205 | 1549 | All | 0.00023 |
ORF7b | 13 | F13del1 | ttT | tt- | 327 | 1549 | All | 0.000063 |
ORF7b | 13 | F13del1 | TTt | -Nt | 8 | 1549 | All | 0.000002 |
ORF7b | 13 | F13del1 | TTT | -NN | 8 | 1549 | All | 0.000002 |
ORF7b | 13 | F13del1 | TTt | -At | 1 | 1549 | All | 0 |
ORF7b | 13 | F13del2 | TTt | --t | 859 | 873 | AY.4 | 0.001337 |
ORF7b | 13 | F13del2 | tTT | t-- | 14 | 873 | AY.4 | 0.000022 |
ORF7b | 13 | F13L | Ttt | Ctt | 729 | 729 | B.1.617.2 | 0.002745 |
ORF7b | 13 | F13L | Ttt | Ctt | 630 | 630 | AY.43 | 0.002791 |
ORF7b | 13 | F13del | TTT | --- | 508 | 508 | B.1.1.7 | 0.000455 |
ORF7b | 13 | F13F | ttT | ttC | 443 | 443 | All | 0.000085 |
ORF7b | 13 | F13del2 | TTt | --t | 415 | 426 | B.1.1.7 | 0.000372 |
ORF7b | 13 | F13del2 | tTT | t-- | 11 | 426 | B.1.1.7 | 0.00001 |
ORF7b | 13 | F13del | TTT | --- | 417 | 417 | AY.4 | 0.000649 |
ORF7b | 13 | F13L | Ttt | Ctt | 312 | 312 | AY.102 | 0.008272 |
ORF7b | 13 | F13del2 | TTt | --t | 293 | 294 | B.1 | 0.002684 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 294 | B.1 | 0.000009 |
ORF7b | 13 | F13F | ttT | ttC | 227 | 227 | B.1.2 | 0.001999 |
ORF7b | 13 | F13del1 | Ttt | -tt | 137 | 211 | B.1.1.7 | 0.000123 |
ORF7b | 13 | F13del1 | ttT | tt- | 70 | 211 | B.1.1.7 | 0.000063 |
ORF7b | 13 | F13del1 | TTt | -Nt | 3 | 211 | B.1.1.7 | 0.000003 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 211 | B.1.1.7 | 0.000001 |
ORF7b | 13 | F13del1 | Ttt | -tt | 172 | 193 | AY.4 | 0.000268 |
ORF7b | 13 | F13del1 | ttT | tt- | 20 | 193 | AY.4 | 0.000031 |
ORF7b | 13 | F13del1 | TTt | -At | 1 | 193 | AY.4 | 0.000002 |
ORF7b | 13 | F13del1 | Ttt | -tt | 146 | 149 | B.1 | 0.001337 |
ORF7b | 13 | F13del1 | ttT | tt- | 3 | 149 | B.1 | 0.000027 |
ORF7b | 13 | F13S | tTt | tCt | 132 | 136 | All | 0.000025 |
ORF7b | 13 | F13S | TTt | AGt | 2 | 136 | All | 0 |
ORF7b | 13 | F13S | TTT | AGC | 2 | 136 | All | 0 |
ORF7b | 13 | F13del2 | TTt | --t | 108 | 124 | AY.25 | 0.00065 |
ORF7b | 13 | F13del2 | tTT | t-- | 15 | 124 | AY.25 | 0.00009 |
ORF7b | 13 | F13del2 | TTT | --N | 1 | 124 | AY.25 | 0.000006 |
ORF7b | 13 | F13del | TTT | --- | 120 | 120 | B.1.617.2 | 0.000452 |
ORF7b | 13 | F13del2 | TTt | --t | 94 | 116 | B.1.617.2 | 0.000354 |
ORF7b | 13 | F13del2 | TTT | --N | 19 | 116 | B.1.617.2 | 0.000072 |
ORF7b | 13 | F13del2 | tTT | t-- | 3 | 116 | B.1.617.2 | 0.000011 |
ORF7b | 13 | F13del | TTT | --- | 106 | 106 | B.1.2 | 0.000933 |
ORF7b | 13 | F13del | TTT | --- | 104 | 104 | AY.68 | 0.02847 |
ORF7b | 13 | F13del1 | Ttt | -tt | 95 | 101 | AY.3 | 0.000945 |
ORF7b | 13 | F13del1 | ttT | tt- | 6 | 101 | AY.3 | 0.00006 |
ORF7b | 13 | F13del2 | TTt | --t | 93 | 94 | AY.43 | 0.000412 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 94 | AY.43 | 0.000004 |
ORF7b | 13 | F13del2 | tTT | t-- | 89 | 93 | B.1.36 | 0.012985 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 93 | B.1.36 | 0.000584 |
ORF7b | 13 | F13del | TTT | --- | 77 | 77 | AY.25 | 0.000463 |
ORF7b | 13 | F13del1 | Ttt | -tt | 76 | 77 | AY.25 | 0.000457 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 77 | AY.25 | 0.000006 |
ORF7b | 13 | F13del2 | TTt | --t | 76 | 76 | C.1.2 | 0.323404 |
ORF7b | 13 | F13del | TTT | --- | 73 | 73 | AY.26 | 0.002067 |
ORF7b | 13 | F13del2 | TTt | --t | 73 | 73 | B.1.525 | 0.008261 |
ORF7b | 13 | F13S | tTt | tCt | 63 | 63 | B.1.1.7 | 0.000056 |
ORF7b | 13 | F13del2 | TTt | --t | 61 | 62 | P.1 | 0.000961 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 62 | P.1 | 0.000016 |
ORF7b | 13 | F13F | ttT | ttC | 60 | 60 | AY.5 | 0.001239 |
ORF7b | 13 | F13del | TTT | --- | 57 | 57 | AY.43 | 0.000253 |
ORF7b | 13 | F13del2 | TTt | --t | 55 | 56 | AY.3 | 0.000547 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 56 | AY.3 | 0.00001 |
ORF7b | 13 | F13del2 | tTT | t-- | 38 | 55 | AY.47 | 0.001182 |
ORF7b | 13 | F13del2 | TTt | --t | 17 | 55 | AY.47 | 0.000529 |
ORF7b | 13 | F13del1 | Ttt | -tt | 49 | 54 | B.1.617.2 | 0.000185 |
ORF7b | 13 | F13del1 | ttT | tt- | 5 | 54 | B.1.617.2 | 0.000019 |
ORF7b | 13 | F13del2 | TTt | --t | 52 | 52 | AY.29 | 0.00082 |
ORF7b | 13 | F13I | Ttt | Att | 45 | 50 | All | 0.000009 |
ORF7b | 13 | F13I | TtT | AtA | 3 | 50 | All | 0.000001 |
ORF7b | 13 | F13I | TtT | AtC | 2 | 50 | All | 0 |
ORF7b | 13 | F13del2 | TTt | --t | 48 | 50 | B.1.2 | 0.000423 |
ORF7b | 13 | F13del2 | tTT | t-- | 2 | 50 | B.1.2 | 0.000018 |
ORF7b | 13 | F13del2 | TTt | --t | 48 | 48 | B.1.221 | 0.00341 |
ORF7b | 13 | F13del1 | Ttt | -tt | 39 | 46 | AY.44 | 0.000237 |
ORF7b | 13 | F13del1 | ttT | tt- | 6 | 46 | AY.44 | 0.000037 |
ORF7b | 13 | F13del1 | TTt | -Nt | 1 | 46 | AY.44 | 0.000006 |
ORF7b | 13 | F13del | TTT | --- | 45 | 45 | AY.39 | 0.001112 |
ORF7b | 13 | F13del | TTT | --- | 44 | 44 | AY.44 | 0.000268 |
ORF7b | 13 | F13del1 | Ttt | -tt | 37 | 43 | AY.103 | 0.00023 |
ORF7b | 13 | F13del1 | ttT | tt- | 6 | 43 | AY.103 | 0.000037 |
ORF7b | 13 | F13del2 | TTt | --t | 40 | 43 | AY.44 | 0.000243 |
ORF7b | 13 | F13del2 | tTT | t-- | 3 | 43 | AY.44 | 0.000018 |
ORF7b | 13 | F13del1 | Ttt | -tt | 39 | 42 | P.1 | 0.000614 |
ORF7b | 13 | F13del1 | ttT | tt- | 3 | 42 | P.1 | 0.000047 |
ORF7b | 13 | F13del | TTT | --- | 41 | 41 | P.1 | 0.000646 |
ORF7b | 13 | F13del1 | Ttt | -tt | 23 | 40 | B.1.2 | 0.000203 |
ORF7b | 13 | F13del1 | ttT | tt- | 16 | 40 | B.1.2 | 0.000141 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 40 | B.1.2 | 0.000009 |
ORF7b | 13 | F13del | TTT | --- | 39 | 39 | AY.119 | 0.001377 |
ORF7b | 13 | F13del2 | TTt | --t | 38 | 38 | AY.42 | 0.001529 |
ORF7b | 13 | F13del2 | TTt | --t | 38 | 38 | B.1.177.33 | 0.0625 |
ORF7b | 13 | F13del2 | tTT | t-- | 28 | 37 | B.1.526 | 0.000658 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 37 | B.1.526 | 0.000212 |
ORF7b | 13 | F13del2 | TTt | --t | 36 | 36 | AY.39 | 0.00089 |
ORF7b | 13 | F13del2 | TTt | --t | 34 | 35 | AY.103 | 0.000211 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 35 | AY.103 | 0.000006 |
ORF7b | 13 | F13del1 | ttT | tt- | 35 | 35 | B.1.221 | 0.002486 |
ORF7b | 13 | F13del2 | TTt | --t | 34 | 34 | AY.46.6 | 0.002455 |
ORF7b | 13 | F13del1 | ttT | tt- | 30 | 34 | AY.98.1 | 0.001453 |
ORF7b | 13 | F13del1 | Ttt | -tt | 4 | 34 | AY.98.1 | 0.000194 |
ORF7b | 13 | F13del | TTT | --- | 30 | 30 | AY.120 | 0.001115 |
ORF7b | 13 | F13del2 | TTt | --t | 29 | 30 | AY.4.2 | 0.000629 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 30 | AY.4.2 | 0.000022 |
ORF7b | 13 | F13del2 | tTT | t-- | 28 | 30 | AY.9.1 | 0.002344 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 30 | AY.9.1 | 0.000167 |
ORF7b | 13 | F13del | TTT | --- | 30 | 30 | B.1 | 0.000275 |
ORF7b | 13 | F13del2 | TTt | --t | 30 | 30 | B.1.1.269 | 0.040595 |
ORF7b | 13 | F13F | ttT | ttC | 29 | 29 | AY.43 | 0.000128 |
ORF7b | 13 | F13del | TTT | --- | 29 | 29 | B.1.177 | 0.000382 |
ORF7b | 13 | F13del1 | Ttt | -tt | 29 | 29 | B.1.177.24 | 0.037565 |
ORF7b | 13 | F13del2 | TTt | --t | 25 | 28 | B.1.429 | 0.000588 |
ORF7b | 13 | F13del2 | tTT | t-- | 3 | 28 | B.1.429 | 0.000071 |
ORF7b | 13 | F13del | TTT | --- | 27 | 27 | B.1.1 | 0.00049 |
ORF7b | 13 | F13F | ttT | ttC | 26 | 26 | B.1.1.7 | 0.000023 |
ORF7b | 13 | F13del1 | ttT | tt- | 26 | 26 | N.10 | 0.764706 |
ORF7b | 13 | F13del2 | TTt | --t | 25 | 25 | AY.99.2 | 0.002304 |
ORF7b | 13 | F13L | Ttt | Ctt | 21 | 25 | B.1.1.7 | 0.000019 |
ORF7b | 13 | F13L | ttT | ttG | 3 | 25 | B.1.1.7 | 0.000003 |
ORF7b | 13 | F13L | ttT | ttA | 1 | 25 | B.1.1.7 | 0.000001 |
ORF7b | 13 | F13V | Ttt | Gtt | 23 | 24 | All | 0.000004 |
ORF7b | 13 | F13V | TtT | GtG | 1 | 24 | All | 0 |
ORF7b | 13 | F13del | TTT | --- | 24 | 24 | AY.5 | 0.000496 |
ORF7b | 13 | F13del1 | Ttt | -tt | 16 | 23 | AY.43 | 0.000071 |
ORF7b | 13 | F13del1 | ttT | tt- | 7 | 23 | AY.43 | 0.000031 |
ORF7b | 13 | F13del2 | tTT | t-- | 12 | 23 | B.1.1 | 0.000218 |
ORF7b | 13 | F13del2 | TTt | --t | 11 | 23 | B.1.1 | 0.0002 |
ORF7b | 13 | F13del1 | Ttt | -tt | 12 | 22 | B.1.1 | 0.000218 |
ORF7b | 13 | F13del1 | ttT | tt- | 8 | 22 | B.1.1 | 0.000145 |
ORF7b | 13 | F13del1 | TTt | -Nt | 1 | 22 | B.1.1 | 0.000018 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 22 | B.1.1 | 0.000018 |
ORF7b | 13 | F13del | TTT | --- | 19 | 19 | AY.103 | 0.000118 |
ORF7b | 13 | F13L | Ttt | Ctt | 17 | 18 | AY.4 | 0.000026 |
ORF7b | 13 | F13L | ttT | ttA | 1 | 18 | AY.4 | 0.000002 |
ORF7b | 13 | F13L | Ttt | Ctt | 18 | 18 | AY.44 | 0.00011 |
ORF7b | 13 | F13del1 | Ttt | -tt | 18 | 18 | B.1.36.8 | 0.018 |
ORF7b | 13 | F13del | TTT | --- | 17 | 17 | B.1.429 | 0.0004 |
ORF7b | 13 | F13del1 | Ttt | -tt | 12 | 17 | B.1.526 | 0.000282 |
ORF7b | 13 | F13del1 | ttT | tt- | 5 | 17 | B.1.526 | 0.000118 |
ORF7b | 13 | F13del2 | TTt | --t | 17 | 17 | R.1 | 0.00153 |
ORF7b | 13 | F13del | TTT | --- | 16 | 16 | AY.102 | 0.000424 |
ORF7b | 13 | F13del | TTT | --- | 16 | 16 | AY.20 | 0.000622 |
ORF7b | 13 | F13del | TTT | --- | 16 | 16 | AY.69 | 0.002987 |
ORF7b | 13 | F13del2 | TTt | --t | 16 | 16 | B.1.1.241 | 0.033126 |
ORF7b | 13 | F13del | TTT | --- | 16 | 16 | B.1.1.519 | 0.000635 |
ORF7b | 13 | F13del2 | TTt | --t | 16 | 16 | B.1.243 | 0.001113 |
ORF7b | 13 | F13del | TTT | --- | 15 | 15 | AY.47 | 0.000467 |
ORF7b | 13 | F13del2 | TTt | --t | 11 | 15 | B.1.177 | 0.000145 |
ORF7b | 13 | F13del2 | tTT | t-- | 4 | 15 | B.1.177 | 0.000053 |
ORF7b | 13 | F13del | TTT | --- | 15 | 15 | B.1.474 | 0.028517 |
ORF7b | 13 | F13del1 | Ttt | -tt | 12 | 14 | AY.5 | 0.000248 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 14 | AY.5 | 0.000041 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.1.519 | 0.000556 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.214.2 | 0.008393 |
ORF7b | 13 | F13del | TTT | --- | 14 | 14 | B.1.351 | 0.000416 |
ORF7b | 13 | F13del1 | Ttt | -tt | 12 | 14 | B.1.429 | 0.000282 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 14 | B.1.429 | 0.000024 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 14 | B.1.429 | 0.000024 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.596 | 0.00122 |
ORF7b | 13 | F13del2 | TTt | --t | 14 | 14 | B.1.637 | 0.001023 |
ORF7b | 13 | F13del2 | TTt | --t | 13 | 13 | AY.102 | 0.000345 |
ORF7b | 13 | F13del | TTT | --- | 13 | 13 | AY.29 | 0.000205 |
ORF7b | 13 | F13del | TTT | --- | 13 | 13 | AY.3 | 0.000129 |
ORF7b | 13 | F13L | Ttt | Ctt | 13 | 13 | AY.5.3 | 0.004386 |
ORF7b | 13 | F13del1 | Ttt | -tt | 13 | 13 | AY.8 | 0.007879 |
ORF7b | 13 | F13S | tTt | tCt | 13 | 13 | B.1.1.515 | 0.26 |
ORF7b | 13 | F13del1 | Ttt | -tt | 7 | 13 | B.1.1.519 | 0.000278 |
ORF7b | 13 | F13del1 | ttT | tt- | 6 | 13 | B.1.1.519 | 0.000238 |
ORF7b | 13 | F13L | Ttt | Ctt | 3 | 12 | 0.166667 | |
ORF7b | 13 | F13L | ttT | ttA | 3 | 12 | 0.166667 | |
ORF7b | 13 | F13L | ttT | ttG | 2 | 12 | 0.111111 | |
ORF7b | 13 | F13L | TtT | CtG | 2 | 12 | 0.111111 | |
ORF7b | 13 | F13L | TtT | CtC | 2 | 12 | 0.111111 | |
ORF7b | 13 | F13Y | tTt | tAt | 10 | 12 | All | 0.000002 |
ORF7b | 13 | F13Y | tTT | tAC | 2 | 12 | All | 0 |
ORF7b | 13 | F13L | Ttt | Ctt | 12 | 12 | AY.103 | 0.000075 |
ORF7b | 13 | F13del1 | ttT | tt- | 12 | 12 | AY.113 | 0.001709 |
ORF7b | 13 | F13del | TTT | --- | 12 | 12 | AY.36 | 0.001779 |
ORF7b | 13 | F13del1 | Ttt | -tt | 10 | 12 | AY.4.2 | 0.000217 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 12 | AY.4.2 | 0.000022 |
ORF7b | 13 | F13del1 | TTt | -Nt | 1 | 12 | AY.4.2 | 0.000022 |
ORF7b | 13 | F13F | ttT | ttC | 12 | 12 | AY.44 | 0.000073 |
ORF7b | 13 | F13del2 | TTt | --t | 12 | 12 | AY.5 | 0.000248 |
ORF7b | 13 | F13del | TTT | --- | 12 | 12 | B.1.1.354 | 0.052632 |
ORF7b | 13 | F13del | TTT | --- | 12 | 12 | B.1.177.19 | 0.017167 |
ORF7b | 13 | F13del | TTT | --- | 11 | 11 | AY.100 | 0.000506 |
ORF7b | 13 | F13del1 | Ttt | -tt | 11 | 11 | AY.100 | 0.000506 |
ORF7b | 13 | F13del1 | Ttt | -tt | 11 | 11 | AY.109 | 0.008136 |
ORF7b | 13 | F13del1 | Ttt | -tt | 11 | 11 | AY.120.1 | 0.003531 |
ORF7b | 13 | F13del2 | TTt | --t | 11 | 11 | B.1.1.1 | 0.003594 |
ORF7b | 13 | F13L | Ttt | Ctt | 8 | 11 | B.1.2 | 0.00007 |
ORF7b | 13 | F13L | ttT | ttA | 3 | 11 | B.1.2 | 0.000026 |
ORF7b | 13 | F13del | TTT | --- | 11 | 11 | B.1.36 | 0.001605 |
ORF7b | 13 | F13F | ttT | ttC | 11 | 11 | B.1.617.2 | 0.000041 |
ORF7b | 13 | F13del | TTT | --- | 11 | 11 | B.1.621 | 0.000974 |
ORF7b | 13 | F13I | Ttt | Att | 5 | 10 | 0.277778 | |
ORF7b | 13 | F13I | TtT | AtA | 3 | 10 | 0.166667 | |
ORF7b | 13 | F13I | TtT | AtC | 2 | 10 | 0.111111 | |
ORF7b | 13 | F13C | tTt | tGt | 8 | 10 | All | 0.000002 |
ORF7b | 13 | F13C | tTT | tGC | 2 | 10 | All | 0 |
ORF7b | 13 | F13del2 | TTt | --t | 10 | 10 | AY.14 | 0.00088 |
ORF7b | 13 | F13F | ttT | ttC | 10 | 10 | AY.4 | 0.000016 |
ORF7b | 13 | F13L | Ttt | Ctt | 10 | 10 | AY.46 | 0.001041 |
ORF7b | 13 | F13del2 | TTt | --t | 10 | 10 | B.1.177.81 | 0.001893 |
ORF7b | 13 | F13del2 | TTt | --t | 10 | 10 | B.1.279 | 0.005136 |
ORF7b | 13 | F13del | TTT | --- | 10 | 10 | B.1.427 | 0.000505 |
ORF7b | 13 | F13del1 | Ttt | -tt | 10 | 10 | B.1.578 | 0.178571 |
ORF7b | 13 | F13del | TTT | --- | 9 | 9 | A | 0.003483 |
ORF7b | 13 | F13R | TTT | CGG | 2 | 9 | All | 0 |
ORF7b | 13 | F13R | TTt | CGt | 2 | 9 | All | 0 |
ORF7b | 13 | F13R | TTT | AGG | 2 | 9 | All | 0 |
ORF7b | 13 | F13R | TTT | CGC | 2 | 9 | All | 0 |
ORF7b | 13 | F13R | TTT | AGA | 1 | 9 | All | 0 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 9 | AY.20 | 0.00035 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 9 | AY.54 | 0.000858 |
ORF7b | 13 | F13del2 | TTt | --t | 9 | 9 | B.1.177.21 | 0.000688 |
ORF7b | 13 | F13del1 | Ttt | -tt | 9 | 9 | B.1.177.81 | 0.001704 |
ORF7b | 13 | F13F | ttT | ttC | 9 | 9 | B.1.429 | 0.000212 |
ORF7b | 13 | F13del | TTT | --- | 9 | 9 | B.1.526 | 0.000212 |
ORF7b | 13 | F13R | TTt | CGt | 2 | 8 | 0.111111 | |
ORF7b | 13 | F13R | TTT | AGG | 2 | 8 | 0.111111 | |
ORF7b | 13 | F13R | TTT | CGC | 2 | 8 | 0.111111 | |
ORF7b | 13 | F13R | TTT | CGG | 2 | 8 | 0.111111 | |
ORF7b | 13 | F13F | ttT | ttC | 8 | 8 | AY.100 | 0.000368 |
ORF7b | 13 | F13L | Ttt | Ctt | 8 | 8 | AY.113 | 0.001139 |
ORF7b | 13 | F13del2 | TTt | --t | 8 | 8 | AY.113 | 0.001139 |
ORF7b | 13 | F13del1 | Ttt | -tt | 8 | 8 | AY.118 | 0.000501 |
ORF7b | 13 | F13del | TTT | --- | 8 | 8 | AY.118 | 0.000501 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 8 | AY.119 | 0.000212 |
ORF7b | 13 | F13del2 | tTT | t-- | 2 | 8 | AY.119 | 0.000071 |
ORF7b | 13 | F13del1 | Ttt | -tt | 6 | 8 | AY.98 | 0.000474 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 8 | AY.98 | 0.000158 |
ORF7b | 13 | F13F | ttT | ttC | 8 | 8 | AY.99.2 | 0.000737 |
ORF7b | 13 | F13L | Ttt | Ctt | 4 | 8 | B.1 | 0.000037 |
ORF7b | 13 | F13L | ttT | ttA | 3 | 8 | B.1 | 0.000027 |
ORF7b | 13 | F13L | ttT | ttG | 1 | 8 | B.1 | 0.000009 |
ORF7b | 13 | F13L | Ttt | Ctt | 5 | 8 | B.1.1 | 0.000091 |
ORF7b | 13 | F13L | ttT | ttG | 2 | 8 | B.1.1 | 0.000036 |
ORF7b | 13 | F13L | ttT | ttA | 1 | 8 | B.1.1 | 0.000018 |
ORF7b | 13 | F13del | TTT | --- | 8 | 8 | B.1.1.317 | 0.003294 |
ORF7b | 13 | F13del2 | TTT | --N | 8 | 8 | B.1.177.65 | 0.005323 |
ORF7b | 13 | F13del | TTT | --- | 8 | 8 | B.6.6 | 0.007111 |
ORF7b | 13 | F13del1 | Ttt | -tt | 6 | 7 | AY.26 | 0.00017 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 7 | AY.26 | 0.000113 |
ORF7b | 13 | F13del2 | tTT | t-- | 3 | 7 | AY.26 | 0.000085 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 7 | AY.26 | 0.000028 |
ORF7b | 13 | F13del2 | TTt | --t | 7 | 7 | AY.34 | 0.000679 |
ORF7b | 13 | F13del2 | TTt | --t | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF7b | 13 | F13del1 | Ttt | -tt | 7 | 7 | AY.75 | 0.000392 |
ORF7b | 13 | F13I | Ttt | Att | 7 | 7 | B.1.1 | 0.000127 |
ORF7b | 13 | F13F | ttT | ttC | 7 | 7 | B.1.177 | 0.000092 |
ORF7b | 13 | F13del | TTT | --- | 7 | 7 | B.1.221 | 0.000497 |
ORF7b | 13 | F13del2 | tTT | t-- | 7 | 7 | B.1.424 | 0.056452 |
ORF7b | 13 | F13del2 | TTt | --t | 7 | 7 | B.1.524 | 0.009845 |
ORF7b | 13 | F13del | TTT | --- | 7 | 7 | B.1.596 | 0.00061 |
ORF7b | 13 | F13del | TTT | --- | 7 | 7 | B.1.617.1 | 0.000903 |
ORF7b | 13 | F13L | Ttt | Ctt | 7 | 7 | D.2 | 0.000525 |
ORF7b | 13 | F13C | tTt | tGt | 4 | 6 | 0.222222 | |
ORF7b | 13 | F13C | tTT | tGC | 2 | 6 | 0.111111 | |
ORF7b | 13 | F13N | TTt | AAt | 4 | 6 | All | 0.000001 |
ORF7b | 13 | F13N | TTT | AAC | 2 | 6 | All | 0 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | AY.110 | 0.000676 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 6 | AY.117 | 0.000423 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 6 | AY.117 | 0.000085 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | AY.120.1 | 0.001926 |
ORF7b | 13 | F13del | TTT | --- | 6 | 6 | AY.14 | 0.000528 |
ORF7b | 13 | F13del | TTT | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | AY.98.1 | 0.000291 |
ORF7b | 13 | F13del2 | TTt | --t | 6 | 6 | B.1.1.240 | 0.028169 |
ORF7b | 13 | F13del1 | Ttt | -tt | 5 | 6 | B.1.1.28 | 0.001556 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 6 | B.1.1.28 | 0.000311 |
ORF7b | 13 | F13del1 | Ttt | -tt | 6 | 6 | B.1.1.298 | 0.005172 |
ORF7b | 13 | F13del1 | Ttt | -tt | 5 | 6 | B.1.177 | 0.000066 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 6 | B.1.177 | 0.000013 |
ORF7b | 13 | F13L | Ttt | Ctt | 6 | 6 | B.1.36 | 0.000875 |
ORF7b | 13 | F13L | Ttt | Ctt | 6 | 6 | B.1.429 | 0.000141 |
ORF7b | 13 | F13N | TTt | AAt | 3 | 5 | 0.166667 | |
ORF7b | 13 | F13Y | tTt | tAt | 3 | 5 | 0.166667 | |
ORF7b | 13 | F13Y | tTT | tAC | 2 | 5 | 0.111111 | |
ORF7b | 13 | F13N | TTT | AAC | 2 | 5 | 0.111111 | |
ORF7b | 13 | F13A | TTt | GCt | 5 | 5 | All | 0.000001 |
ORF7b | 13 | F13H | TTT | CAC | 3 | 5 | All | 0.000001 |
ORF7b | 13 | F13H | TTt | CAt | 2 | 5 | All | 0 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 5 | AY.102 | 0.00008 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 5 | AY.102 | 0.000027 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 5 | AY.102 | 0.000027 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 5 | AY.107 | 0.00233 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | AY.113 | 0.000712 |
ORF7b | 13 | F13del1 | ttT | tt- | 4 | 5 | AY.20 | 0.000155 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 5 | AY.20 | 0.000039 |
ORF7b | 13 | F13F | ttT | ttC | 5 | 5 | AY.25 | 0.00003 |
ORF7b | 13 | F13L | Ttt | Ctt | 3 | 5 | AY.25 | 0.000018 |
ORF7b | 13 | F13L | ttT | ttG | 2 | 5 | AY.25 | 0.000012 |
ORF7b | 13 | F13L | Ttt | Ctt | 5 | 5 | AY.39 | 0.000124 |
ORF7b | 13 | F13del1 | Ttt | -tt | 4 | 5 | AY.39 | 0.000099 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 5 | AY.39 | 0.000025 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | AY.4.2 | 0.000108 |
ORF7b | 13 | F13del1 | Ttt | -tt | 5 | 5 | AY.46 | 0.00052 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 5 | AY.9 | 0.000338 |
ORF7b | 13 | F13del1 | ttT | tt- | 4 | 5 | AY.9 | 0.00027 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 5 | AY.9 | 0.000068 |
ORF7b | 13 | F13F | ttT | ttC | 5 | 5 | B.1 | 0.000046 |
ORF7b | 13 | F13I | Ttt | Att | 5 | 5 | B.1 | 0.000046 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | B.1.1.214 | 0.000277 |
ORF7b | 13 | F13del1 | Ttt | -tt | 5 | 5 | B.1.1.301 | 0.005896 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | B.1.111 | 0.005875 |
ORF7b | 13 | F13S | tTt | tCt | 5 | 5 | B.1.160.16 | 0.004647 |
ORF7b | 13 | F13S | tTt | tCt | 5 | 5 | B.1.2 | 0.000044 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 5 | B.1.369 | 0.000856 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 5 | B.1.369 | 0.00057 |
ORF7b | 13 | F13del2 | TTt | --t | 5 | 5 | B.1.610 | 0.01773 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | B.1.621.1 | 0.002529 |
ORF7b | 13 | F13L | Ttt | Ctt | 4 | 5 | B.1.637 | 0.000292 |
ORF7b | 13 | F13L | ttT | ttG | 1 | 5 | B.1.637 | 0.000073 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | C.37 | 0.00058 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | D.2 | 0.000375 |
ORF7b | 13 | F13L | ttT | ttA | 4 | 5 | P.1 | 0.000063 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 5 | P.1 | 0.000016 |
ORF7b | 13 | F13del | TTT | --- | 5 | 5 | P.1.14 | 0.000239 |
ORF7b | 13 | F13H | TTt | CAt | 2 | 4 | 0.111111 | |
ORF7b | 13 | F13S | TTt | AGt | 2 | 4 | 0.111111 | |
ORF7b | 13 | F13S | TTT | AGC | 2 | 4 | 0.111111 | |
ORF7b | 13 | F13H | TTT | CAC | 2 | 4 | 0.111111 | |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 4 | AY.100 | 0.000138 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 4 | AY.100 | 0.000046 |
ORF7b | 13 | F13A | TTt | GCt | 4 | 4 | AY.113 | 0.00057 |
ORF7b | 13 | F13del1 | Ttt | -tt | 4 | 4 | AY.23 | 0.000279 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | AY.23 | 0.000279 |
ORF7b | 13 | F13S | tTt | tCt | 4 | 4 | AY.29 | 0.000063 |
ORF7b | 13 | F13del1 | Ttt | -tt | 4 | 4 | AY.3.1 | 0.000341 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | AY.35 | 0.000932 |
ORF7b | 13 | F13S | tTt | tCt | 4 | 4 | AY.4 | 0.000006 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 4 | AY.46.6 | 0.000144 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 4 | AY.46.6 | 0.000144 |
ORF7b | 13 | F13L | Ttt | Ctt | 4 | 4 | AY.5 | 0.000083 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | AY.6 | 0.000165 |
ORF7b | 13 | F13del2 | tTT | t-- | 4 | 4 | AY.66 | 0.004278 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 4 | AY.70 | 0.000626 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 4 | AY.70 | 0.000209 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 4 | AY.9.2 | 0.00011 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 4 | AY.9.2 | 0.000037 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 4 | AY.99.2 | 0.000276 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 4 | AY.99.2 | 0.000092 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.1.306 | 0.001754 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.1.318 | 0.001207 |
ORF7b | 13 | F13del1 | ttT | tt- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | B.1.1.39 | 0.002039 |
ORF7b | 13 | F13V | Ttt | Gtt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | B.1.177.42 | 0.003578 |
ORF7b | 13 | F13del1 | ttT | tt- | 4 | 4 | B.1.177.86 | 0.000734 |
ORF7b | 13 | F13V | Ttt | Gtt | 4 | 4 | B.1.2 | 0.000035 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.210 | 0.008529 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | B.1.466.2 | 0.001565 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | B.1.575 | 0.001214 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | B.1.91 | 0.008299 |
ORF7b | 13 | F13del1 | Ttt | -tt | 4 | 4 | C.1.2 | 0.017021 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | C.36 | 0.003643 |
ORF7b | 13 | F13del2 | TTt | --t | 4 | 4 | K.3 | 0.024691 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 4 | P.1.14 | 0.000143 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 4 | P.1.14 | 0.000048 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | Q.4 | 0.001819 |
ORF7b | 13 | F13del | TTT | --- | 4 | 4 | Q.8 | 0.00066 |
ORF7b | 13 | F13X | tTT | tAG | 2 | 3 | 0.111111 | |
ORF7b | 13 | F13K | TTT | AAG | 2 | 3 | 0.111111 | |
ORF7b | 13 | F13K | TTT | AAA | 1 | 3 | 0.055556 | |
ORF7b | 13 | F13X | tTT | tAA | 1 | 3 | 0.055556 | |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | A.2 | 0.001985 |
ORF7b | 13 | F13X | tTT | tAG | 2 | 3 | All | 0 |
ORF7b | 13 | F13K | TTT | AAG | 2 | 3 | All | 0 |
ORF7b | 13 | F13K | TTT | AAA | 1 | 3 | All | 0 |
ORF7b | 13 | F13X | tTT | tAA | 1 | 3 | All | 0 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | AY.107 | 0.001398 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 3 | AY.116.1 | 0.000934 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | AY.13 | 0.000483 |
ORF7b | 13 | F13L | Ttt | Ctt | 3 | 3 | AY.20 | 0.000117 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | AY.27 | 0.000194 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.3.1 | 0.000256 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.33 | 0.0002 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | AY.33 | 0.0002 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.36 | 0.000445 |
ORF7b | 13 | F13V | Ttt | Gtt | 3 | 3 | AY.4 | 0.000005 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.4.5 | 0.000322 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 3 | AY.42 | 0.00008 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 3 | AY.42 | 0.00004 |
ORF7b | 13 | F13I | Ttt | Att | 3 | 3 | AY.43 | 0.000013 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | AY.46.4 | 0.000494 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 3 | AY.54 | 0.000191 |
ORF7b | 13 | F13del1 | TTt | -Nt | 1 | 3 | AY.54 | 0.000095 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 3 | AY.6 | 0.000123 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.62 | 0.001307 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | AY.7 | 0.000588 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | AY.75.1 | 0.000541 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | B | 0.000383 |
ORF7b | 13 | F13del2 | tTT | t-- | 3 | 3 | B.1.1.159 | 0.014019 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.1.232 | 0.005445 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | B.1.1.28 | 0.000934 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.1.311 | 0.001074 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | B.1.1.37 | 0.000579 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.1.70 | 0.001023 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 3 | B.1.160 | 0.000094 |
ORF7b | 13 | F13Y | tTt | tAt | 3 | 3 | B.1.243 | 0.000209 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 3 | B.1.36 | 0.000438 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | B.1.36.7 | 0.012 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.369 | 0.000856 |
ORF7b | 13 | F13del1 | ttT | tt- | 3 | 3 | B.1.416 | 0.003807 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | B.1.425 | 0.008982 |
ORF7b | 13 | F13del1 | Ttt | -tt | 3 | 3 | B.1.427 | 0.000151 |
ORF7b | 13 | F13S | tTt | tCt | 3 | 3 | B.1.429 | 0.000071 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | B.1.560 | 0.013889 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.567 | 0.01 |
ORF7b | 13 | F13del2 | tTT | t-- | 3 | 3 | B.1.568 | 0.003333 |
ORF7b | 13 | F13F | ttT | ttC | 3 | 3 | B.1.596 | 0.000261 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 3 | B.1.596 | 0.000174 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 3 | B.1.596 | 0.000087 |
ORF7b | 13 | F13S | tTt | tCt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF7b | 13 | F13del2 | TTt | --t | 3 | 3 | B.1.9.5 | 0.017045 |
ORF7b | 13 | F13I | Ttt | Att | 3 | 3 | B.3.1 | 0.004975 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | C.36 | 0.002732 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | C.7 | 0.103448 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | P.1.10 | 0.000808 |
ORF7b | 13 | F13del | TTT | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF7b | 13 | F13Q | TTT | CAG | 2 | 2 | 0.111111 | |
ORF7b | 13 | F13M | TtT | AtG | 2 | 2 | 0.111111 | |
ORF7b | 13 | F13W | tTT | tGG | 2 | 2 | 0.111111 | |
ORF7b | 13 | F13F | ttT | ttC | 2 | 2 | 0.111111 | |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | A | 0.000774 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | A.1 | 0.000564 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | A.2 | 0.001324 |
ORF7b | 13 | F13L | ttT | ttA | 2 | 2 | A.23.1 | 0.001408 |
ORF7b | 13 | F13W | tTT | tGG | 2 | 2 | All | 0 |
ORF7b | 13 | F13M | TtT | AtG | 2 | 2 | All | 0 |
ORF7b | 13 | F13Q | TTT | CAG | 2 | 2 | All | 0 |
ORF7b | 13 | F13S | tTt | tCt | 2 | 2 | AY.100 | 0.000092 |
ORF7b | 13 | F13F | ttT | ttC | 2 | 2 | AY.103 | 0.000012 |
ORF7b | 13 | F13S | tTt | tCt | 2 | 2 | AY.103 | 0.000012 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 2 | AY.108 | 0.001103 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 2 | AY.108 | 0.001103 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.109 | 0.001479 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | AY.110 | 0.000225 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF7b | 13 | F13L | Ttt | Ctt | 2 | 2 | AY.114 | 0.000462 |
ORF7b | 13 | F13S | tTt | tCt | 2 | 2 | AY.116 | 0.000574 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 13 | F13S | tTt | tCt | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.12 | 0.000632 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 2 | AY.120 | 0.000037 |
ORF7b | 13 | F13del1 | TTt | -Nt | 1 | 2 | AY.120 | 0.000037 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.120.1 | 0.000642 |
ORF7b | 13 | F13del2 | tTT | t-- | 2 | 2 | AY.120.2 | 0.002571 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 2 | AY.121 | 0.000271 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | AY.121 | 0.000135 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.121 | 0.000135 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | AY.16 | 0.00038 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.16 | 0.00038 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 2 | AY.19 | 0.00114 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 2 | AY.19 | 0.00114 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.2 | 0.000712 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.23 | 0.000139 |
ORF7b | 13 | F13L | Ttt | Ctt | 2 | 2 | AY.23 | 0.000139 |
ORF7b | 13 | F13F | ttT | ttC | 2 | 2 | AY.26 | 0.000057 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 13 | F13L | ttT | ttG | 1 | 2 | AY.3 | 0.00001 |
ORF7b | 13 | F13L | ttT | ttA | 2 | 2 | AY.36 | 0.000296 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | AY.39.1 | 0.000079 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | AY.39.1 | 0.00004 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.39.1 | 0.00004 |
ORF7b | 13 | F13C | tTt | tGt | 2 | 2 | AY.42 | 0.00008 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.45 | 0.000243 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.45 | 0.000243 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.46 | 0.000208 |
ORF7b | 13 | F13F | ttT | ttC | 2 | 2 | AY.46.4 | 0.000329 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | AY.47 | 0.000062 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.54 | 0.000191 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.55 | 0.001835 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | AY.56 | 0.00321 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.61 | 0.00021 |
ORF7b | 13 | F13F | ttT | ttC | 2 | 2 | AY.62 | 0.000871 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 2 | AY.68 | 0.000274 |
ORF7b | 13 | F13del1 | TTT | -NN | 1 | 2 | AY.68 | 0.000274 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.73 | 0.001331 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.74 | 0.000116 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | AY.74 | 0.000116 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | AY.75 | 0.000056 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | AY.75 | 0.000056 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | AY.88 | 0.001768 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | AY.95 | 0.001522 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.1.159 | 0.009346 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.1.192 | 0.004619 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 2 | B.1.1.216 | 0.001781 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.1.232 | 0.00363 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.1.28 | 0.000622 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.1.284 | 0.000107 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | B.1.1.284 | 0.000107 |
ORF7b | 13 | F13I | Ttt | Att | 2 | 2 | B.1.1.29 | 0.020619 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.1.304 | 0.005618 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7b | 13 | F13L | Ttt | Ctt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.1.434 | 0.000697 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.1.53 | 0.027397 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.1.71 | 0.012121 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.160 | 0.000031 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | B.1.160 | 0.000031 |
ORF7b | 13 | F13V | Ttt | Gtt | 2 | 2 | B.1.177 | 0.000026 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.177.5 | 0.002484 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.177.50 | 0.00939 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.177.77 | 0.001452 |
ORF7b | 13 | F13L | Ttt | Ctt | 2 | 2 | B.1.221 | 0.000142 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.221.3 | 0.001667 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.311 | 0.000549 |
ORF7b | 13 | F13del2 | TTT | --N | 1 | 2 | B.1.351 | 0.00003 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 2 | B.1.351 | 0.00003 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 2 | B.1.351 | 0.00003 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.351 | 0.00003 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.351.3 | 0.001753 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.36.33 | 0.015152 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.366 | 0.009756 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | B.1.427 | 0.000101 |
ORF7b | 13 | F13V | Ttt | Gtt | 2 | 2 | B.1.427 | 0.000101 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.438.1 | 0.000215 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 2 | B.1.466.2 | 0.000391 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 2 | B.1.466.2 | 0.000391 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 2 | B.1.509 | 0.001732 |
ORF7b | 13 | F13del1 | ttT | tt- | 2 | 2 | B.1.525 | 0.000226 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.577 | 0.001375 |
ORF7b | 13 | F13L | Ttt | Ctt | 2 | 2 | B.1.596 | 0.000174 |
ORF7b | 13 | F13S | tTt | tCt | 2 | 2 | B.1.597 | 0.009259 |
ORF7b | 13 | F13S | tTt | tCt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7b | 13 | F13Y | tTt | tAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | B.1.632 | 0.013423 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | B.1.637 | 0.000146 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | C.36.3.1 | 0.005435 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | C.37 | 0.000232 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | D.2 | 0.00015 |
ORF7b | 13 | F13F | ttT | ttC | 2 | 2 | P.1 | 0.000032 |
ORF7b | 13 | F13del1 | Ttt | -tt | 2 | 2 | P.1.10 | 0.000539 |
ORF7b | 13 | F13L | Ttt | Ctt | 2 | 2 | P.1.10 | 0.000539 |
ORF7b | 13 | F13L | Ttt | Ctt | 2 | 2 | P.1.14 | 0.000096 |
ORF7b | 13 | F13del | TTT | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | P.1.17 | 0.000324 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 2 | P.1.7 | 0.000319 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 2 | P.1.7 | 0.000319 |
ORF7b | 13 | F13del2 | TTt | --t | 2 | 2 | P.2 | 0.000373 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | A.1 | 0.000282 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | A.2.5 | 0.000499 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | A.25 | 0.018182 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | A.3 | 0.002096 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AD.2 | 0.000219 |
ORF7b | 13 | F13P | TTt | CCt | 1 | 1 | All | 0 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AU.1 | 0.001266 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AU.3 | 0.00211 |
ORF7b | 13 | F13Y | tTt | tAt | 1 | 1 | AY.10 | 0.00053 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.101 | 0.00049 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | AY.104 | 0.001984 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.105 | 0.000643 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.107 | 0.000466 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.11 | 0.001339 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.111 | 0.000183 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 1 | AY.111 | 0.000183 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.113 | 0.000142 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.117 | 0.000085 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.118 | 0.000063 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.14 | 0.000088 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 13 | F13N | TTt | AAt | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.23.1 | 0.000417 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.24 | 0.000431 |
ORF7b | 13 | F13A | TTt | GCt | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.27 | 0.000065 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.29 | 0.000016 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.3 | 0.00001 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.33 | 0.000067 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.33 | 0.000067 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.34.1 | 0.00051 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | AY.37 | 0.000316 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.4.1 | 0.000737 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.4.3 | 0.000842 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.4.4 | 0.000409 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | AY.40 | 0.000964 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 13 | F13Y | tTt | tAt | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 13 | F13H | TTT | CAC | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.45 | 0.000122 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.45 | 0.000122 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | AY.46 | 0.000104 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | AY.46.3 | 0.000934 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.46.5 | 0.000198 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.49 | 0.003195 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.5 | 0.000021 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.5.3 | 0.000337 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.52 | 0.000814 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.56 | 0.001605 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | AY.59 | 0.00053 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.67 | 0.000464 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | AY.7.1 | 0.000113 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.7.1 | 0.000113 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.7.1 | 0.000113 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | AY.71 | 0.000475 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.75 | 0.000056 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.75.1 | 0.00018 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.81 | 0.001992 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | AY.83 | 0.001724 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.84 | 0.000437 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | AY.9.1 | 0.000084 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.90 | 0.000684 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.91 | 0.00073 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | AY.92 | 0.000287 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | AY.94 | 0.000443 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.98 | 0.000079 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | AY.99.2 | 0.000092 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | AZ.1 | 0.000867 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B | 0.000128 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B | 0.000128 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | B.1 | 0.000009 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 13 | F13V | TtT | GtG | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.152 | 0.04 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.1.165 | 0.015385 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.170 | 0.001247 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.1.190 | 0.05 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.219 | 0.005 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.234 | 0.012048 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.243 | 0.004082 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.243 | 0.004082 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | B.1.1.253 | 0.002506 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.1.289 | 0.002083 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.1.377 | 0.001381 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.1.385 | 0.004464 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.515 | 0.02 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7b | 13 | F13P | TTt | CCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.1.89 | 0.006061 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.119 | 0.010526 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.120 | 0.007692 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | B.1.139 | 0.000733 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.142 | 0.002899 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | B.1.142 | 0.002899 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.149 | 0.003425 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 13 | F13C | tTt | tGt | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.177.33 | 0.001645 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.41 | 0.0025 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.58 | 0.001332 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.179 | 0.003759 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.199 | 0.004132 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.213 | 0.014925 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.214.3 | 0.007143 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.219 | 0.009434 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.223 | 0.002778 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.234 | 0.000132 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.240 | 0.000216 |
ORF7b | 13 | F13del2 | TTT | --N | 1 | 1 | B.1.240 | 0.000216 |
ORF7b | 13 | F13L | ttT | ttA | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF7b | 13 | F13L | ttT | ttA | 1 | 1 | B.1.258 | 0.000067 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.265 | 0.001271 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.298 | 0.002114 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.340 | 0.004292 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.349 | 0.000715 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.357 | 0.009524 |
ORF7b | 13 | F13del2 | tTT | t-- | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.36.25 | 0.002208 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.36.39 | 0.002217 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.36.39 | 0.002217 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.361 | 0.001289 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.391 | 0.001127 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.398 | 0.002976 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.400 | 0.000429 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.424 | 0.008065 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.426 | 0.001009 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 13 | F13V | Ttt | Gtt | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.493 | 0.025641 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.521 | 0.004975 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.523 | 0.002451 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.525 | 0.000113 |
ORF7b | 13 | F13L | ttT | ttA | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.556 | 0.007519 |
ORF7b | 13 | F13R | TTT | AGA | 1 | 1 | B.1.560 | 0.00463 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.561 | 0.000397 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.561 | 0.000397 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.564 | 0.000426 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.565 | 0.00081 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.575 | 0.000303 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 13 | F13I | Ttt | Att | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.600 | 0.005848 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.609 | 0.000479 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 13 | F13C | tTt | tGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | B.1.620 | 0.000946 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.620 | 0.000946 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.621 | 0.000089 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.623 | 0.000536 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.1.88.1 | 0.004808 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.3 | 0.000831 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | B.40 | 0.000364 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | B.40 | 0.000364 |
ORF7b | 13 | F13del1 | ttT | tt- | 1 | 1 | B.6 | 0.00091 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | B.6 | 0.00091 |
ORF7b | 13 | F13F | ttT | ttC | 1 | 1 | B.6.8 | 0.008264 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | C.16 | 0.00106 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | C.37 | 0.000116 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | N.10 | 0.029412 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | N.5 | 0.001767 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | N.5 | 0.001767 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | P.1 | 0.000016 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | P.1.1 | 0.000318 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7b | 13 | F13S | tTt | tCt | 1 | 1 | P.1.14 | 0.000048 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | P.1.6 | 0.001946 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | P.1.7 | 0.000319 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | P.1.7 | 0.000319 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | P.2 | 0.000187 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | P.6 | 0.003145 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | Q.1 | 0.000126 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | Q.4 | 0.000455 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | Q.8 | 0.000165 |
ORF7b | 13 | F13L | Ttt | Ctt | 1 | 1 | Q.8 | 0.000165 |
ORF7b | 13 | F13del | TTT | --- | 1 | 1 | R.1 | 0.00009 |
ORF7b | 13 | F13del1 | Ttt | -tt | 1 | 1 | R.1 | 0.00009 |
ORF7b | 13 | F13del2 | TTt | --t | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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