CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 1 | M1I | nonsyn | atG | atT | 3045 | 2087 | 0.685386 | 27756-27758 | |
ORF7b | 1 | M1I | nonsyn | atG | atA | 3045 | 857 | 0.281445 | 27756-27758 | |
ORF7b | 1 | M1I | nonsyn | atG | atC | 3045 | 101 | 0.0331691 | 27756-27758 | |
ORF7b | 1 | M1del | del | ATG | --- | 2076 | 2076 | 1 | 27756-27758 | |
ORF7b | 1 | M1V | nonsyn | Atg | Gtg | 549 | 543 | 0.989071 | 27756-27758 | |
ORF7b | 1 | M1V | nonsyn | AtG | GtT | 549 | 6 | 0.010929 | 27756-27758 | |
ORF7b | 1 | M1T | nonsyn | aTg | aCg | 354 | 326 | 0.920904 | 27756-27758 | |
ORF7b | 1 | M1T | nonsyn | aTG | aCA | 354 | 27 | 0.0762712 | 27756-27758 | |
ORF7b | 1 | M1T | nonsyn | aTG | aCT | 354 | 1 | 0.00282486 | 27756-27758 | |
ORF7b | 1 | M1del2 | del | aTG | a-- | 153 | 85 | 0.555556 | 27756-27758 | |
ORF7b | 1 | M1del2 | del | ATg | --g | 153 | 37 | 0.24183 | 27756-27758 | |
ORF7b | 1 | M1del2 | del | ATG | G-- | 153 | 31 | 0.202614 | 27756-27758 | |
ORF7b | 1 | M1L | nonsyn | Atg | Ttg | 69 | 39 | 0.565217 | 27756-27758 | |
ORF7b | 1 | M1L | nonsyn | Atg | Ctg | 69 | 30 | 0.434783 | 27756-27758 | |
ORF7b | 1 | M1del1 | del | Atg | -tg | 68 | 54 | 0.794118 | 27756-27758 | |
ORF7b | 1 | M1del1 | del | atG | at- | 68 | 7 | 0.102941 | 27756-27758 | |
ORF7b | 1 | M1del1 | del | ATg | -Ag | 68 | 3 | 0.0441176 | 27756-27758 | |
ORF7b | 1 | M1del1 | del | ATG | -NN | 68 | 1 | 0.0147059 | 27756-27758 | |
ORF7b | 1 | M1del1 | del | ATG | -AA | 68 | 1 | 0.0147059 | 27756-27758 | |
ORF7b | 1 | M1del1 | del | AtG | -tN | 68 | 1 | 0.0147059 | 27756-27758 | |
ORF7b | 1 | M1del1 | del | ATG | -CN | 68 | 1 | 0.0147059 | 27756-27758 | |
ORF7b | 1 | M1K | nonsyn | aTg | aAg | 59 | 59 | 1 | 27756-27758 | |
ORF7b | 1 | M1R | nonsyn | aTg | aGg | 13 | 11 | 0.846154 | 27756-27758 | |
ORF7b | 1 | M1R | nonsyn | aTG | aGA | 13 | 2 | 0.153846 | 27756-27758 | |
ORF7b | 1 | M1E | nonsyn | ATG | GAA | 1 | 1 | 1 | 27756-27758 | |
ORF7b | 1 | M1S | nonsyn | ATG | TCA | 1 | 1 | 1 | 27756-27758 | |
ORF7b | 1 | M1D | nonsyn | ATG | GAT | 1 | 1 | 1 | 27756-27758 | |
ORF7b | 1 | M1A | nonsyn | ATG | GCA | 1 | 1 | 1 | 27756-27758 | |
ORF7b | 1 | M1X | nonsyn | ATG | TGA | 1 | 1 | 1 | 27756-27758 | |
ORF7b | 1 | M1H | nonsyn | ATG | CAT | 1 | 1 | 1 | 27756-27758 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 1 | M1I | atG | atT | 2087 | 3045 | All | 0.000399 |
ORF7b | 1 | M1I | atG | atA | 857 | 3045 | All | 0.000164 |
ORF7b | 1 | M1I | atG | atC | 101 | 3045 | All | 0.000019 |
ORF7b | 1 | M1del | ATG | --- | 2076 | 2076 | All | 0.000397 |
ORF7b | 1 | M1del | ATG | --- | 1262 | 1262 | B.1.1.7 | 0.00113 |
ORF7b | 1 | M1I | atG | atT | 433 | 711 | B.1.1.7 | 0.000388 |
ORF7b | 1 | M1I | atG | atA | 231 | 711 | B.1.1.7 | 0.000207 |
ORF7b | 1 | M1I | atG | atC | 47 | 711 | B.1.1.7 | 0.000042 |
ORF7b | 1 | M1V | Atg | Gtg | 543 | 549 | All | 0.000104 |
ORF7b | 1 | M1V | AtG | GtT | 6 | 549 | All | 0.000001 |
ORF7b | 1 | M1I | atG | atT | 245 | 364 | AY.4 | 0.000381 |
ORF7b | 1 | M1I | atG | atA | 116 | 364 | AY.4 | 0.000181 |
ORF7b | 1 | M1I | atG | atC | 3 | 364 | AY.4 | 0.000005 |
ORF7b | 1 | M1V | Atg | Gtg | 358 | 358 | B.1.1.222 | 0.073031 |
ORF7b | 1 | M1T | aTg | aCg | 326 | 354 | All | 0.000062 |
ORF7b | 1 | M1T | aTG | aCA | 27 | 354 | All | 0.000005 |
ORF7b | 1 | M1T | aTG | aCT | 1 | 354 | All | 0 |
ORF7b | 1 | M1I | atG | atT | 248 | 298 | B.1.617.2 | 0.000934 |
ORF7b | 1 | M1I | atG | atA | 50 | 298 | B.1.617.2 | 0.000188 |
ORF7b | 1 | M1T | aTg | aCg | 255 | 279 | B.1.1.7 | 0.000228 |
ORF7b | 1 | M1T | aTG | aCA | 23 | 279 | B.1.1.7 | 0.000021 |
ORF7b | 1 | M1T | aTG | aCT | 1 | 279 | B.1.1.7 | 0.000001 |
ORF7b | 1 | M1I | atG | atT | 252 | 269 | B.1.526 | 0.005923 |
ORF7b | 1 | M1I | atG | atC | 11 | 269 | B.1.526 | 0.000259 |
ORF7b | 1 | M1I | atG | atA | 6 | 269 | B.1.526 | 0.000141 |
ORF7b | 1 | M1del | ATG | --- | 239 | 239 | AY.4 | 0.000372 |
ORF7b | 1 | M1I | atG | atT | 173 | 182 | AY.43 | 0.000766 |
ORF7b | 1 | M1I | atG | atA | 7 | 182 | AY.43 | 0.000031 |
ORF7b | 1 | M1I | atG | atC | 2 | 182 | AY.43 | 0.000009 |
ORF7b | 1 | M1del2 | aTG | a-- | 85 | 153 | All | 0.000016 |
ORF7b | 1 | M1del2 | ATg | --g | 37 | 153 | All | 0.000007 |
ORF7b | 1 | M1del2 | ATG | G-- | 31 | 153 | All | 0.000006 |
ORF7b | 1 | M1I | atG | atT | 83 | 118 | AY.103 | 0.000515 |
ORF7b | 1 | M1I | atG | atA | 34 | 118 | AY.103 | 0.000211 |
ORF7b | 1 | M1I | atG | atC | 1 | 118 | AY.103 | 0.000006 |
ORF7b | 1 | M1I | atG | atT | 78 | 96 | P.1 | 0.001229 |
ORF7b | 1 | M1I | atG | atA | 16 | 96 | P.1 | 0.000252 |
ORF7b | 1 | M1I | atG | atC | 2 | 96 | P.1 | 0.000032 |
ORF7b | 1 | M1I | atG | atT | 73 | 74 | AY.98 | 0.005767 |
ORF7b | 1 | M1I | atG | atA | 1 | 74 | AY.98 | 0.000079 |
ORF7b | 1 | M1L | Atg | Ttg | 39 | 69 | All | 0.000007 |
ORF7b | 1 | M1L | Atg | Ctg | 30 | 69 | All | 0.000006 |
ORF7b | 1 | M1V | Atg | Gtg | 63 | 69 | B.1.1.7 | 0.000056 |
ORF7b | 1 | M1V | AtG | GtT | 6 | 69 | B.1.1.7 | 0.000005 |
ORF7b | 1 | M1del1 | Atg | -tg | 54 | 68 | All | 0.00001 |
ORF7b | 1 | M1del1 | atG | at- | 7 | 68 | All | 0.000001 |
ORF7b | 1 | M1del1 | ATg | -Ag | 3 | 68 | All | 0.000001 |
ORF7b | 1 | M1del1 | ATG | -NN | 1 | 68 | All | 0 |
ORF7b | 1 | M1del1 | AtG | -tN | 1 | 68 | All | 0 |
ORF7b | 1 | M1del1 | ATG | -AA | 1 | 68 | All | 0 |
ORF7b | 1 | M1del1 | ATG | -CN | 1 | 68 | All | 0 |
ORF7b | 1 | M1del2 | aTG | a-- | 53 | 63 | B.1.1.7 | 0.000047 |
ORF7b | 1 | M1del2 | ATg | --g | 10 | 63 | B.1.1.7 | 0.000009 |
ORF7b | 1 | M1K | aTg | aAg | 59 | 59 | All | 0.000011 |
ORF7b | 1 | M1I | atG | atA | 34 | 58 | AY.44 | 0.000207 |
ORF7b | 1 | M1I | atG | atT | 24 | 58 | AY.44 | 0.000146 |
ORF7b | 1 | M1del | ATG | --- | 46 | 46 | AY.25 | 0.000277 |
ORF7b | 1 | M1I | atG | atT | 41 | 41 | B.1.36.34 | 0.87234 |
ORF7b | 1 | M1K | aTg | aAg | 41 | 41 | B.1.616 | 1 |
ORF7b | 1 | M1I | atG | atA | 20 | 40 | B.1.2 | 0.000176 |
ORF7b | 1 | M1I | atG | atT | 18 | 40 | B.1.2 | 0.000158 |
ORF7b | 1 | M1I | atG | atC | 2 | 40 | B.1.2 | 0.000018 |
ORF7b | 1 | M1del | ATG | --- | 38 | 38 | P.1 | 0.000599 |
ORF7b | 1 | M1I | atG | atA | 19 | 34 | AY.25 | 0.000114 |
ORF7b | 1 | M1I | atG | atT | 15 | 34 | AY.25 | 0.00009 |
ORF7b | 1 | M1del2 | ATG | G-- | 26 | 33 | P.1 | 0.00041 |
ORF7b | 1 | M1del2 | ATg | --g | 4 | 33 | P.1 | 0.000063 |
ORF7b | 1 | M1del2 | aTG | a-- | 3 | 33 | P.1 | 0.000047 |
ORF7b | 1 | M1del | ATG | --- | 32 | 32 | B.1.2 | 0.000282 |
ORF7b | 1 | M1I | atG | atT | 27 | 31 | B.1.427 | 0.001363 |
ORF7b | 1 | M1I | atG | atC | 3 | 31 | B.1.427 | 0.000151 |
ORF7b | 1 | M1I | atG | atA | 1 | 31 | B.1.427 | 0.00005 |
ORF7b | 1 | M1I | atG | atT | 13 | 28 | B.1 | 0.000119 |
ORF7b | 1 | M1I | atG | atA | 13 | 28 | B.1 | 0.000119 |
ORF7b | 1 | M1I | atG | atC | 2 | 28 | B.1 | 0.000018 |
ORF7b | 1 | M1del1 | Atg | -tg | 22 | 25 | B.1.1.7 | 0.00002 |
ORF7b | 1 | M1del1 | atG | at- | 2 | 25 | B.1.1.7 | 0.000002 |
ORF7b | 1 | M1del1 | ATG | -CN | 1 | 25 | B.1.1.7 | 0.000001 |
ORF7b | 1 | M1I | atG | atT | 20 | 25 | B.1.621 | 0.00177 |
ORF7b | 1 | M1I | atG | atC | 3 | 25 | B.1.621 | 0.000266 |
ORF7b | 1 | M1I | atG | atA | 2 | 25 | B.1.621 | 0.000177 |
ORF7b | 1 | M1I | atG | atT | 24 | 24 | B.1.177.35 | 0.016586 |
ORF7b | 1 | M1I | atG | atA | 16 | 22 | AY.102 | 0.000424 |
ORF7b | 1 | M1I | atG | atT | 6 | 22 | AY.102 | 0.000159 |
ORF7b | 1 | M1I | atG | atA | 14 | 22 | AY.3 | 0.000139 |
ORF7b | 1 | M1I | atG | atT | 8 | 22 | AY.3 | 0.00008 |
ORF7b | 1 | M1del | ATG | --- | 22 | 22 | B.1.427 | 0.001111 |
ORF7b | 1 | M1del | ATG | --- | 20 | 20 | B.1.617.2 | 0.000075 |
ORF7b | 1 | M1del | ATG | --- | 19 | 19 | AY.103 | 0.000118 |
ORF7b | 1 | M1I | atG | atT | 13 | 19 | B.1.177 | 0.000171 |
ORF7b | 1 | M1I | atG | atA | 5 | 19 | B.1.177 | 0.000066 |
ORF7b | 1 | M1I | atG | atC | 1 | 19 | B.1.177 | 0.000013 |
ORF7b | 1 | M1del | ATG | --- | 18 | 18 | AY.43 | 0.00008 |
ORF7b | 1 | M1del | ATG | --- | 18 | 18 | B.1.1 | 0.000327 |
ORF7b | 1 | M1I | atG | atA | 10 | 18 | B.1.351 | 0.000297 |
ORF7b | 1 | M1I | atG | atT | 7 | 18 | B.1.351 | 0.000208 |
ORF7b | 1 | M1I | atG | atC | 1 | 18 | B.1.351 | 0.00003 |
ORF7b | 1 | M1del | ATG | --- | 18 | 18 | C.37 | 0.002089 |
ORF7b | 1 | M1del | ATG | --- | 17 | 17 | AY.29 | 0.000268 |
ORF7b | 1 | M1I | atG | atT | 17 | 17 | B.1.160 | 0.00053 |
ORF7b | 1 | M1V | Atg | Gtg | 16 | 16 | AY.25 | 0.000096 |
ORF7b | 1 | M1I | atG | atA | 8 | 16 | B.1.1 | 0.000145 |
ORF7b | 1 | M1I | atG | atT | 8 | 16 | B.1.1 | 0.000145 |
ORF7b | 1 | M1I | atG | atT | 8 | 16 | B.1.596 | 0.000697 |
ORF7b | 1 | M1I | atG | atC | 7 | 16 | B.1.596 | 0.00061 |
ORF7b | 1 | M1I | atG | atA | 1 | 16 | B.1.596 | 0.000087 |
ORF7b | 1 | M1del | ATG | --- | 15 | 15 | AY.3 | 0.000149 |
ORF7b | 1 | M1I | atG | atA | 13 | 15 | AY.46 | 0.001353 |
ORF7b | 1 | M1I | atG | atT | 1 | 15 | AY.46 | 0.000104 |
ORF7b | 1 | M1I | atG | atC | 1 | 15 | AY.46 | 0.000104 |
ORF7b | 1 | M1del | ATG | --- | 14 | 14 | AY.111 | 0.002564 |
ORF7b | 1 | M1del | ATG | --- | 14 | 14 | AY.44 | 0.000085 |
ORF7b | 1 | M1del | ATG | --- | 14 | 14 | B.1 | 0.000128 |
ORF7b | 1 | M1del | ATG | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF7b | 1 | M1I | atG | atA | 7 | 14 | C.37 | 0.000812 |
ORF7b | 1 | M1I | atG | atT | 6 | 14 | C.37 | 0.000696 |
ORF7b | 1 | M1I | atG | atC | 1 | 14 | C.37 | 0.000116 |
ORF7b | 1 | M1R | aTg | aGg | 11 | 13 | All | 0.000002 |
ORF7b | 1 | M1R | aTG | aGA | 2 | 13 | All | 0 |
ORF7b | 1 | M1I | atG | atT | 11 | 13 | AY.29 | 0.000174 |
ORF7b | 1 | M1I | atG | atA | 2 | 13 | AY.29 | 0.000032 |
ORF7b | 1 | M1I | atG | atT | 7 | 13 | B.1.1.214 | 0.000388 |
ORF7b | 1 | M1I | atG | atA | 6 | 13 | B.1.1.214 | 0.000333 |
ORF7b | 1 | M1I | atG | atA | 12 | 13 | D.2 | 0.0009 |
ORF7b | 1 | M1I | atG | atT | 1 | 13 | D.2 | 0.000075 |
ORF7b | 1 | M1I | atG | atA | 12 | 12 | AY.7 | 0.002352 |
ORF7b | 1 | M1I | atG | atT | 9 | 12 | B.1.1.519 | 0.000357 |
ORF7b | 1 | M1I | atG | atA | 3 | 12 | B.1.1.519 | 0.000119 |
ORF7b | 1 | M1I | atG | atT | 11 | 12 | Q.1 | 0.00139 |
ORF7b | 1 | M1I | atG | atA | 1 | 12 | Q.1 | 0.000126 |
ORF7b | 1 | M1del | ATG | --- | 11 | 11 | AY.26 | 0.000311 |
ORF7b | 1 | M1del | ATG | --- | 11 | 11 | AY.39 | 0.000272 |
ORF7b | 1 | M1I | atG | atT | 11 | 11 | AY.72 | 0.014966 |
ORF7b | 1 | M1I | atG | atA | 6 | 11 | B.1.429 | 0.000141 |
ORF7b | 1 | M1I | atG | atT | 4 | 11 | B.1.429 | 0.000094 |
ORF7b | 1 | M1I | atG | atC | 1 | 11 | B.1.429 | 0.000024 |
ORF7b | 1 | M1V | Atg | Gtg | 11 | 11 | D.2 | 0.000825 |
ORF7b | 1 | M1del | ATG | --- | 11 | 11 | Q.8 | 0.001814 |
ORF7b | 1 | M1del2 | ATg | --g | 5 | 10 | AY.25 | 0.00003 |
ORF7b | 1 | M1del2 | aTG | a-- | 5 | 10 | AY.25 | 0.00003 |
ORF7b | 1 | M1I | atG | atA | 10 | 10 | AY.9.2 | 0.000367 |
ORF7b | 1 | M1del | ATG | --- | 10 | 10 | B.1.1.214 | 0.000555 |
ORF7b | 1 | M1L | Atg | Ttg | 9 | 10 | B.1.1.7 | 0.000008 |
ORF7b | 1 | M1L | Atg | Ctg | 1 | 10 | B.1.1.7 | 0.000001 |
ORF7b | 1 | M1V | Atg | Gtg | 10 | 10 | B.1.2 | 0.000088 |
ORF7b | 1 | M1del | ATG | --- | 10 | 10 | B.1.234 | 0.001319 |
ORF7b | 1 | M1I | atG | atT | 7 | 10 | P.1.14 | 0.000335 |
ORF7b | 1 | M1I | atG | atA | 3 | 10 | P.1.14 | 0.000143 |
ORF7b | 1 | M1del1 | Atg | -tg | 8 | 9 | AY.103 | 0.00005 |
ORF7b | 1 | M1del1 | atG | at- | 1 | 9 | AY.103 | 0.000006 |
ORF7b | 1 | M1I | atG | atA | 7 | 9 | AY.117 | 0.000592 |
ORF7b | 1 | M1I | atG | atT | 2 | 9 | AY.117 | 0.000169 |
ORF7b | 1 | M1V | Atg | Gtg | 9 | 9 | AY.4 | 0.000014 |
ORF7b | 1 | M1V | Atg | Gtg | 9 | 9 | B.1.177 | 0.000119 |
ORF7b | 1 | M1del | ATG | --- | 9 | 9 | B.1.429 | 0.000212 |
ORF7b | 1 | M1I | atG | atA | 9 | 9 | P.1.4 | 0.008789 |
ORF7b | 1 | M1I | atG | atA | 5 | 8 | AY.9.1 | 0.000419 |
ORF7b | 1 | M1I | atG | atT | 3 | 8 | AY.9.1 | 0.000251 |
ORF7b | 1 | M1del2 | aTG | a-- | 8 | 8 | B.1 | 0.000073 |
ORF7b | 1 | M1V | Atg | Gtg | 8 | 8 | B.1.1 | 0.000145 |
ORF7b | 1 | M1L | Atg | Ttg | 8 | 8 | B.1.177.62 | 0.009535 |
ORF7b | 1 | M1I | atG | atT | 6 | 8 | P.2 | 0.00112 |
ORF7b | 1 | M1I | atG | atA | 1 | 8 | P.2 | 0.000187 |
ORF7b | 1 | M1I | atG | atC | 1 | 8 | P.2 | 0.000187 |
ORF7b | 1 | M1L | Atg | Ctg | 7 | 7 | AY.100 | 0.000322 |
ORF7b | 1 | M1V | Atg | Gtg | 7 | 7 | AY.106 | 0.002344 |
ORF7b | 1 | M1del | ATG | --- | 7 | 7 | AY.5 | 0.000145 |
ORF7b | 1 | M1I | atG | atT | 4 | 7 | AY.5 | 0.000083 |
ORF7b | 1 | M1I | atG | atA | 3 | 7 | AY.5 | 0.000062 |
ORF7b | 1 | M1V | Atg | Gtg | 7 | 7 | B.1 | 0.000064 |
ORF7b | 1 | M1del2 | ATG | G-- | 4 | 7 | B.1.2 | 0.000035 |
ORF7b | 1 | M1del2 | aTG | a-- | 2 | 7 | B.1.2 | 0.000018 |
ORF7b | 1 | M1del2 | ATg | --g | 1 | 7 | B.1.2 | 0.000009 |
ORF7b | 1 | M1del | ATG | --- | 7 | 7 | B.1.258.17 | 0.000728 |
ORF7b | 1 | M1I | atG | atA | 6 | 7 | B.1.575 | 0.00182 |
ORF7b | 1 | M1I | atG | atT | 1 | 7 | B.1.575 | 0.000303 |
ORF7b | 1 | M1V | Atg | Gtg | 7 | 7 | B.55 | 0.020649 |
ORF7b | 1 | M1I | atG | atT | 4 | 6 | AY.100 | 0.000184 |
ORF7b | 1 | M1I | atG | atA | 2 | 6 | AY.100 | 0.000092 |
ORF7b | 1 | M1T | aTg | aCg | 6 | 6 | AY.20 | 0.000233 |
ORF7b | 1 | M1I | atG | atA | 5 | 6 | AY.26 | 0.000142 |
ORF7b | 1 | M1I | atG | atT | 1 | 6 | AY.26 | 0.000028 |
ORF7b | 1 | M1L | Atg | Ttg | 4 | 6 | AY.4 | 0.000006 |
ORF7b | 1 | M1L | Atg | Ctg | 2 | 6 | AY.4 | 0.000003 |
ORF7b | 1 | M1T | aTg | aCg | 6 | 6 | AY.44 | 0.000037 |
ORF7b | 1 | M1I | atG | atA | 6 | 6 | AY.69 | 0.00112 |
ORF7b | 1 | M1L | Atg | Ctg | 6 | 6 | AY.7.2 | 0.003356 |
ORF7b | 1 | M1T | aTg | aCg | 6 | 6 | B.1 | 0.000055 |
ORF7b | 1 | M1del | ATG | --- | 6 | 6 | B.1.1.519 | 0.000238 |
ORF7b | 1 | M1del | ATG | --- | 6 | 6 | B.1.351 | 0.000178 |
ORF7b | 1 | M1I | atG | atT | 4 | 6 | B.1.637 | 0.000292 |
ORF7b | 1 | M1I | atG | atA | 2 | 6 | B.1.637 | 0.000146 |
ORF7b | 1 | M1V | Atg | Gtg | 6 | 6 | P.1 | 0.000095 |
ORF7b | 1 | M1del2 | ATg | --g | 5 | 5 | AY.103 | 0.000031 |
ORF7b | 1 | M1I | atG | atA | 5 | 5 | AY.108 | 0.005513 |
ORF7b | 1 | M1I | atG | atT | 5 | 5 | AY.2 | 0.001781 |
ORF7b | 1 | M1I | atG | atA | 4 | 5 | AY.20 | 0.000155 |
ORF7b | 1 | M1I | atG | atT | 1 | 5 | AY.20 | 0.000039 |
ORF7b | 1 | M1I | atG | atT | 4 | 5 | AY.23 | 0.000279 |
ORF7b | 1 | M1I | atG | atA | 1 | 5 | AY.23 | 0.00007 |
ORF7b | 1 | M1I | atG | atT | 3 | 5 | AY.4.2 | 0.000065 |
ORF7b | 1 | M1I | atG | atA | 2 | 5 | AY.4.2 | 0.000043 |
ORF7b | 1 | M1V | Atg | Gtg | 5 | 5 | AY.43 | 0.000022 |
ORF7b | 1 | M1I | atG | atT | 5 | 5 | B.1.1.348 | 0.003981 |
ORF7b | 1 | M1del | ATG | --- | 5 | 5 | B.1.243 | 0.000348 |
ORF7b | 1 | M1del2 | aTG | a-- | 5 | 5 | B.1.36 | 0.00073 |
ORF7b | 1 | M1del | ATG | --- | 5 | 5 | B.1.526 | 0.000118 |
ORF7b | 1 | M1del1 | ATg | -Ag | 3 | 5 | B.1.617.2 | 0.000011 |
ORF7b | 1 | M1del1 | Atg | -tg | 2 | 5 | B.1.617.2 | 0.000008 |
ORF7b | 1 | M1del | ATG | --- | 5 | 5 | B.1.621 | 0.000443 |
ORF7b | 1 | M1del | ATG | --- | 5 | 5 | P.1.14 | 0.000239 |
ORF7b | 1 | M1del | ATG | --- | 5 | 5 | P.2 | 0.000933 |
ORF7b | 1 | M1I | atG | atA | 4 | 4 | A.28 | 0.010582 |
ORF7b | 1 | M1del | ATG | --- | 4 | 4 | AY.114 | 0.000924 |
ORF7b | 1 | M1I | atG | atA | 3 | 4 | AY.119 | 0.000106 |
ORF7b | 1 | M1I | atG | atT | 1 | 4 | AY.119 | 0.000035 |
ORF7b | 1 | M1I | atG | atT | 3 | 4 | AY.13 | 0.000483 |
ORF7b | 1 | M1I | atG | atA | 1 | 4 | AY.13 | 0.000161 |
ORF7b | 1 | M1I | atG | atA | 2 | 4 | AY.6 | 0.000082 |
ORF7b | 1 | M1I | atG | atT | 2 | 4 | AY.6 | 0.000082 |
ORF7b | 1 | M1I | atG | atA | 3 | 4 | AY.75 | 0.000168 |
ORF7b | 1 | M1I | atG | atT | 1 | 4 | AY.75 | 0.000056 |
ORF7b | 1 | M1del | ATG | --- | 4 | 4 | AY.79 | 0.004843 |
ORF7b | 1 | M1I | atG | atT | 3 | 4 | AY.98.1 | 0.000145 |
ORF7b | 1 | M1I | atG | atA | 1 | 4 | AY.98.1 | 0.000048 |
ORF7b | 1 | M1del | ATG | --- | 4 | 4 | B.1.1.284 | 0.00043 |
ORF7b | 1 | M1I | atG | atT | 4 | 4 | B.1.177.42 | 0.003578 |
ORF7b | 1 | M1I | atG | atA | 3 | 4 | B.1.234 | 0.000396 |
ORF7b | 1 | M1I | atG | atT | 1 | 4 | B.1.234 | 0.000132 |
ORF7b | 1 | M1del | ATG | --- | 4 | 4 | B.1.351.2 | 0.00121 |
ORF7b | 1 | M1T | aTg | aCg | 4 | 4 | B.1.429 | 0.000094 |
ORF7b | 1 | M1del1 | atG | at- | 3 | 4 | B.1.429 | 0.000071 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 4 | B.1.429 | 0.000024 |
ORF7b | 1 | M1I | atG | atT | 3 | 4 | B.1.525 | 0.000339 |
ORF7b | 1 | M1I | atG | atC | 1 | 4 | B.1.525 | 0.000113 |
ORF7b | 1 | M1I | atG | atA | 3 | 4 | B.1.577 | 0.002062 |
ORF7b | 1 | M1I | atG | atT | 1 | 4 | B.1.577 | 0.000687 |
ORF7b | 1 | M1K | aTg | aAg | 4 | 4 | B.1.617.2 | 0.000015 |
ORF7b | 1 | M1I | atG | atT | 4 | 4 | C.30 | 0.006908 |
ORF7b | 1 | M1del | ATG | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF7b | 1 | M1del | ATG | --- | 4 | 4 | Q.1 | 0.000505 |
ORF7b | 1 | M1I | atG | atA | 3 | 3 | 0.166667 | |
ORF7b | 1 | M1I | atG | atA | 2 | 3 | AY.105 | 0.001286 |
ORF7b | 1 | M1I | atG | atT | 1 | 3 | AY.105 | 0.000643 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | AY.107 | 0.001398 |
ORF7b | 1 | M1R | aTg | aGg | 3 | 3 | AY.114 | 0.000693 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | AY.120 | 0.000112 |
ORF7b | 1 | M1T | aTg | aCg | 3 | 3 | AY.29 | 0.000047 |
ORF7b | 1 | M1V | Atg | Gtg | 3 | 3 | AY.29 | 0.000047 |
ORF7b | 1 | M1I | atG | atA | 2 | 3 | AY.37 | 0.000632 |
ORF7b | 1 | M1I | atG | atC | 1 | 3 | AY.37 | 0.000316 |
ORF7b | 1 | M1I | atG | atT | 2 | 3 | AY.39 | 0.000049 |
ORF7b | 1 | M1I | atG | atA | 1 | 3 | AY.39 | 0.000025 |
ORF7b | 1 | M1T | aTg | aCg | 3 | 3 | AY.39.1 | 0.000119 |
ORF7b | 1 | M1I | atG | atA | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF7b | 1 | M1I | atG | atT | 2 | 3 | AY.42 | 0.00008 |
ORF7b | 1 | M1I | atG | atA | 1 | 3 | AY.42 | 0.00004 |
ORF7b | 1 | M1del2 | ATg | --g | 2 | 3 | AY.43 | 0.000009 |
ORF7b | 1 | M1del2 | ATG | G-- | 1 | 3 | AY.43 | 0.000004 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | AY.45 | 0.000365 |
ORF7b | 1 | M1I | atG | atT | 2 | 3 | B | 0.000256 |
ORF7b | 1 | M1I | atG | atA | 1 | 3 | B | 0.000128 |
ORF7b | 1 | M1I | atG | atT | 2 | 3 | B.1.1.284 | 0.000215 |
ORF7b | 1 | M1I | atG | atA | 1 | 3 | B.1.1.284 | 0.000107 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.1.318 | 0.000905 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.1.434 | 0.001046 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.1.58 | 0.016129 |
ORF7b | 1 | M1K | aTg | aAg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7b | 1 | M1del2 | ATg | --g | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7b | 1 | M1I | atG | atA | 1 | 3 | B.1.177.73 | 0.000566 |
ORF7b | 1 | M1I | atG | atC | 1 | 3 | B.1.177.73 | 0.000566 |
ORF7b | 1 | M1I | atG | atT | 1 | 3 | B.1.177.73 | 0.000566 |
ORF7b | 1 | M1I | atG | atA | 3 | 3 | B.1.177.81 | 0.000568 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 3 | B.1.2 | 0.000009 |
ORF7b | 1 | M1del1 | ATG | -NN | 1 | 3 | B.1.2 | 0.000009 |
ORF7b | 1 | M1del1 | AtG | -tN | 1 | 3 | B.1.2 | 0.000009 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.258 | 0.0002 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.36 | 0.000438 |
ORF7b | 1 | M1I | atG | atC | 2 | 3 | B.1.36.29 | 0.001035 |
ORF7b | 1 | M1I | atG | atT | 1 | 3 | B.1.36.29 | 0.000517 |
ORF7b | 1 | M1I | atG | atT | 2 | 3 | B.1.470 | 0.002809 |
ORF7b | 1 | M1I | atG | atA | 1 | 3 | B.1.470 | 0.001404 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | B.1.565 | 0.002431 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | B.1.620 | 0.002838 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.621.1 | 0.001517 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.628 | 0.001057 |
ORF7b | 1 | M1del | ATG | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | C.16 | 0.003181 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | D.5 | 0.014925 |
ORF7b | 1 | M1T | aTg | aCg | 3 | 3 | P.1 | 0.000047 |
ORF7b | 1 | M1I | atG | atT | 2 | 3 | P.1.15 | 0.000465 |
ORF7b | 1 | M1I | atG | atC | 1 | 3 | P.1.15 | 0.000232 |
ORF7b | 1 | M1T | aTg | aCg | 3 | 3 | P.1.16 | 0.001122 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | P.1.7 | 0.000958 |
ORF7b | 1 | M1I | atG | atT | 3 | 3 | Q.3 | 0.000435 |
ORF7b | 1 | M1I | atG | atT | 2 | 3 | Q.8 | 0.00033 |
ORF7b | 1 | M1I | atG | atA | 1 | 3 | Q.8 | 0.000165 |
ORF7b | 1 | M1V | Atg | Gtg | 2 | 2 | 0.111111 | |
ORF7b | 1 | M1L | Atg | Ctg | 2 | 2 | A | 0.000774 |
ORF7b | 1 | M1del1 | Atg | -tg | 2 | 2 | AY.102 | 0.000053 |
ORF7b | 1 | M1T | aTg | aCg | 2 | 2 | AY.103 | 0.000012 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.117 | 0.000169 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.118 | 0.000125 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.120 | 0.000074 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.14 | 0.000176 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.20 | 0.000078 |
ORF7b | 1 | M1del1 | Atg | -tg | 2 | 2 | AY.25 | 0.000012 |
ORF7b | 1 | M1L | Atg | Ctg | 2 | 2 | AY.25 | 0.000012 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 2 | AY.25 | 0.000006 |
ORF7b | 1 | M1T | aTG | aCA | 1 | 2 | AY.25 | 0.000006 |
ORF7b | 1 | M1del2 | aTG | a-- | 2 | 2 | AY.26 | 0.000057 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | AY.27 | 0.000065 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | AY.27 | 0.000065 |
ORF7b | 1 | M1del2 | ATg | --g | 2 | 2 | AY.29 | 0.000032 |
ORF7b | 1 | M1R | aTg | aGg | 2 | 2 | AY.3 | 0.00002 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.30 | 0.000791 |
ORF7b | 1 | M1del1 | Atg | -tg | 2 | 2 | AY.39 | 0.000049 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | AY.39.1 | 0.00004 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | AY.39.1 | 0.00004 |
ORF7b | 1 | M1T | aTg | aCg | 2 | 2 | AY.4 | 0.000003 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF7b | 1 | M1T | aTG | aCA | 2 | 2 | AY.4.2 | 0.000043 |
ORF7b | 1 | M1del1 | Atg | -tg | 2 | 2 | AY.43 | 0.000009 |
ORF7b | 1 | M1V | Atg | Gtg | 2 | 2 | AY.44 | 0.000012 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | AY.46.4 | 0.000165 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | AY.46.4 | 0.000165 |
ORF7b | 1 | M1T | aTg | aCg | 2 | 2 | AY.47 | 0.000062 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.47 | 0.000062 |
ORF7b | 1 | M1L | Atg | Ctg | 2 | 2 | AY.5 | 0.000041 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | AY.54 | 0.000095 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | AY.54 | 0.000095 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.59 | 0.001059 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.6 | 0.000082 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.68 | 0.000547 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.74 | 0.000231 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.75.1 | 0.000361 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | AY.85 | 0.000854 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | AY.94 | 0.000885 |
ORF7b | 1 | M1I | atG | atT | 2 | 2 | AY.94 | 0.000885 |
ORF7b | 1 | M1L | Atg | Ttg | 2 | 2 | B.1.1 | 0.000036 |
ORF7b | 1 | M1R | aTG | aGA | 2 | 2 | B.1.1 | 0.000036 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.1.159 | 0.009346 |
ORF7b | 1 | M1I | atG | atT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7b | 1 | M1del1 | Atg | -tg | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | B.1.1.37 | 0.000193 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | B.1.1.37 | 0.000193 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.1.420 | 0.002012 |
ORF7b | 1 | M1I | atG | atT | 2 | 2 | B.1.139 | 0.001466 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.177.21 | 0.000153 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | B.1.177.50 | 0.00939 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7b | 1 | M1del1 | Atg | -tg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | B.1.177.7 | 0.000165 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | B.1.177.7 | 0.000165 |
ORF7b | 1 | M1I | atG | atT | 2 | 2 | B.1.177.75 | 0.002081 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | B.1.177.86 | 0.000183 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | B.1.177.86 | 0.000183 |
ORF7b | 1 | M1T | aTg | aCg | 2 | 2 | B.1.2 | 0.000018 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.214 | 0.007326 |
ORF7b | 1 | M1I | atG | atT | 2 | 2 | B.1.22 | 0.002635 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.243 | 0.000139 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.258 | 0.000133 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.306 | 0.011429 |
ORF7b | 1 | M1I | atG | atT | 2 | 2 | B.1.344 | 0.016393 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.36 | 0.000292 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.459 | 0.008163 |
ORF7b | 1 | M1del | ATG | --- | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | B.1.499 | 0.00105 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | B.1.499 | 0.00105 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | B.1.517 | 0.000427 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | B.1.517 | 0.000427 |
ORF7b | 1 | M1I | atG | atT | 2 | 2 | B.1.588 | 0.00182 |
ORF7b | 1 | M1del2 | ATg | --g | 1 | 2 | B.1.596 | 0.000087 |
ORF7b | 1 | M1del2 | aTG | a-- | 1 | 2 | B.1.596 | 0.000087 |
ORF7b | 1 | M1T | aTg | aCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7b | 1 | M1L | Atg | Ctg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7b | 1 | M1V | Atg | Gtg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7b | 1 | M1L | Atg | Ttg | 2 | 2 | B.1.623 | 0.001073 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | B.1.628 | 0.000705 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | B.1.629 | 0.013333 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | B.1.629 | 0.013333 |
ORF7b | 1 | M1I | atG | atA | 2 | 2 | C.36 | 0.001821 |
ORF7b | 1 | M1L | Atg | Ttg | 2 | 2 | C.37 | 0.000232 |
ORF7b | 1 | M1T | aTg | aCg | 2 | 2 | N.3 | 0.011628 |
ORF7b | 1 | M1del2 | aTG | a-- | 2 | 2 | P.1.1 | 0.000635 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | P.1.17 | 0.000162 |
ORF7b | 1 | M1I | atG | atA | 1 | 2 | P.1.17 | 0.000162 |
ORF7b | 1 | M1I | atG | atC | 1 | 2 | R.1 | 0.00009 |
ORF7b | 1 | M1I | atG | atT | 1 | 2 | R.1 | 0.00009 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | A | 0.000387 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | A.1 | 0.000282 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | A.2.4 | 0.003367 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | A.2.4 | 0.003367 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | A.23 | 0.010526 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AE.8 | 0.000489 |
ORF7b | 1 | M1S | ATG | TCA | 1 | 1 | All | 0 |
ORF7b | 1 | M1E | ATG | GAA | 1 | 1 | All | 0 |
ORF7b | 1 | M1A | ATG | GCA | 1 | 1 | All | 0 |
ORF7b | 1 | M1X | ATG | TGA | 1 | 1 | All | 0 |
ORF7b | 1 | M1D | ATG | GAT | 1 | 1 | All | 0 |
ORF7b | 1 | M1H | ATG | CAT | 1 | 1 | All | 0 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AU.1 | 0.001266 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.10 | 0.00053 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | AY.102 | 0.000027 |
ORF7b | 1 | M1L | Atg | Ctg | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | AY.103 | 0.000006 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.113 | 0.000142 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.116 | 0.000287 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.118 | 0.000063 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | AY.119 | 0.000035 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 1 | M1del2 | aTG | a-- | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.120.1 | 0.000321 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | AY.14 | 0.000088 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.16 | 0.00038 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.16.1 | 0.00047 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7b | 1 | M1R | aTg | aGg | 1 | 1 | AY.25 | 0.000006 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | AY.26 | 0.000028 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.28 | 0.00189 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | AY.29 | 0.000016 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.34.1 | 0.00051 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | AY.34.1 | 0.00051 |
ORF7b | 1 | M1I | atG | atC | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 1 | M1del1 | ATG | -AA | 1 | 1 | AY.4 | 0.000002 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | AY.4.4 | 0.000409 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | AY.4.5 | 0.000107 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.40 | 0.000964 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.41 | 0.000294 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | AY.41 | 0.000294 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 1 | M1R | aTg | aGg | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | AY.43 | 0.000004 |
ORF7b | 1 | M1E | ATG | GAA | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | AY.44 | 0.000006 |
ORF7b | 1 | M1del2 | ATg | --g | 1 | 1 | AY.46 | 0.000104 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.46.6 | 0.000072 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.48 | 0.000465 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.5.4 | 0.000277 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.55 | 0.000917 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.60 | 0.000938 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.66 | 0.00107 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.67 | 0.000464 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.7.1 | 0.000113 |
ORF7b | 1 | M1A | ATG | GCA | 1 | 1 | AY.71 | 0.000475 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.73 | 0.000665 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | AY.79 | 0.001211 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | AY.84 | 0.000437 |
ORF7b | 1 | M1del2 | ATg | --g | 1 | 1 | AY.88 | 0.000884 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | AY.9 | 0.000068 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AY.99 | 0.001049 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | AZ.2 | 0.000821 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF7b | 1 | M1R | aTg | aGg | 1 | 1 | B | 0.000128 |
ORF7b | 1 | M1D | ATG | GAT | 1 | 1 | B | 0.000128 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B | 0.000128 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | B.1 | 0.000009 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | B.1 | 0.000009 |
ORF7b | 1 | M1del1 | atG | at- | 1 | 1 | B.1 | 0.000009 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | B.1.1 | 0.000018 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.1.165 | 0.015385 |
ORF7b | 1 | M1I | atG | atC | 1 | 1 | B.1.1.170 | 0.001247 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.1.205 | 0.003717 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7b | 1 | M1del2 | ATg | --g | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.1.240 | 0.004695 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.1.274 | 0.005051 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.1.279 | 0.001121 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.1.280 | 0.003086 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 1 | M1L | Atg | Ctg | 1 | 1 | B.1.1.326 | 0.001761 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7b | 1 | M1I | atG | atC | 1 | 1 | B.1.1.347 | 0.018182 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.1.386 | 0.066667 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7b | 1 | M1del2 | aTG | a-- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7b | 1 | M1L | Atg | Ctg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.1.482 | 0.023256 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.1.517 | 0.006803 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.61 | 0.008772 |
ORF7b | 1 | M1H | ATG | CAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.1.98 | 0.018519 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.104 | 0.00369 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.131 | 0.008772 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.160 | 0.000031 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.160.7 | 0.002079 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 1 | M1R | aTg | aGg | 1 | 1 | B.1.177 | 0.000013 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.177.33 | 0.001645 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.177.42 | 0.000894 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.189 | 0.004292 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.195 | 0.005025 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.221 | 0.000071 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.221 | 0.000071 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.221.1 | 0.002907 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.225 | 0.015385 |
ORF7b | 1 | M1R | aTg | aGg | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 1 | M1L | Atg | Ctg | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | B.1.260 | 0.003344 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.293 | 0.0125 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.311 | 0.000275 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.36 | 0.000146 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF7b | 1 | M1R | aTg | aGg | 1 | 1 | B.1.362 | 0.001541 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.399 | 0.001934 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.40 | 0.019608 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.408 | 0.00369 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.413 | 0.004255 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.416 | 0.001269 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.428 | 0.00102 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.442 | 0.035714 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.448 | 0.002625 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.456 | 0.003268 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | B.1.459 | 0.004082 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7b | 1 | M1I | atG | atC | 1 | 1 | B.1.469 | 0.00361 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.497 | 0.000315 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.509 | 0.000866 |
ORF7b | 1 | M1del2 | aTG | a-- | 1 | 1 | B.1.525 | 0.000113 |
ORF7b | 1 | M1del2 | aTG | a-- | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.526 | 0.000024 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.564 | 0.000426 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | B.1.576 | 0.000907 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.596 | 0.000087 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7b | 1 | M1del2 | ATg | --g | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.621 | 0.000089 |
ORF7b | 1 | M1T | aTG | aCA | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | B.1.637 | 0.000073 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | B.12 | 0.00641 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | B.27 | 0.015385 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | B.39 | 0.002331 |
ORF7b | 1 | M1V | Atg | Gtg | 1 | 1 | C.1 | 0.002392 |
ORF7b | 1 | M1L | Atg | Ctg | 1 | 1 | C.16 | 0.00106 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | C.30 | 0.001727 |
ORF7b | 1 | M1K | aTg | aAg | 1 | 1 | C.36 | 0.000911 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | C.36.3 | 0.000567 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | C.37.1 | 0.002618 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | C.37.1 | 0.002618 |
ORF7b | 1 | M1I | atG | atC | 1 | 1 | C.39 | 0.018868 |
ORF7b | 1 | M1L | Atg | Ctg | 1 | 1 | D.2 | 0.000075 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | D.2 | 0.000075 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | N.3 | 0.005814 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | N.5 | 0.001767 |
ORF7b | 1 | M1X | ATG | TGA | 1 | 1 | P.1 | 0.000016 |
ORF7b | 1 | M1S | ATG | TCA | 1 | 1 | P.1 | 0.000016 |
ORF7b | 1 | M1L | Atg | Ttg | 1 | 1 | P.1 | 0.000016 |
ORF7b | 1 | M1I | atG | atT | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7b | 1 | M1del | ATG | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | P.1.6 | 0.001946 |
ORF7b | 1 | M1I | atG | atA | 1 | 1 | P.1.8 | 0.004785 |
ORF7b | 1 | M1del1 | Atg | -tg | 1 | 1 | Q.1 | 0.000126 |
ORF7b | 1 | M1T | aTg | aCg | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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