CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = Y40del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a40Y40del1delTac-ac73560.76712327511-27513
ORF7a40Y40del1deltaCta-73100.13698627511-27513
ORF7a40Y40del1deltACt-N7330.041095927511-27513
ORF7a40Y40del1delTaCGa-7320.027397327511-27513
ORF7a40Y40del1delTaC-aN7320.027397327511-27513

Details of the mutation Y40del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a40Y40del1Tac-ac5673All0.000011
ORF7a40Y40del1taCta-1073All0.000002
ORF7a40Y40del1tACt-N373All0.000001
ORF7a40Y40del1TaC-aN273All0
ORF7a40Y40del1TaCGa-273All0
ORF7a40Y40del1Tac-ac69B.1.1.70.000005
ORF7a40Y40del1tACt-N29B.1.1.70.000002
ORF7a40Y40del1TaC-aN19B.1.1.70.000001
ORF7a40Y40del1Tac-ac77AY.440.000043
ORF7a40Y40del1Tac-ac66B.1.1770.000079
ORF7a40Y40del1Tac-ac66P.10.000095
ORF7a40Y40del1Tac-ac35AY.1030.000019
ORF7a40Y40del1taCta-25AY.1030.000012
ORF7a40Y40del1taCta-44AY.250.000024
ORF7a40Y40del1Tac-ac34AY.40.000005
ORF7a40Y40del1tACt-N14AY.40.000002
ORF7a40Y40del1Tac-ac33AY.200.000117
ORF7a40Y40del1Tac-ac33AY.30.00003
ORF7a40Y40del1Tac-ac33B.1.20.000026
ORF7a40Y40del1taCta-23B.1.617.20.000008
ORF7a40Y40del1Tac-ac13B.1.617.20.000004
ORF7a40Y40del1taCta-12AY.290.000016
ORF7a40Y40del1Tac-ac12AY.290.000016
ORF7a40Y40del1Tac-ac22AY.430.000009
ORF7a40Y40del1TaC-aN12B.1.4360.001029
ORF7a40Y40del1Tac-ac12B.1.4360.001029
ORF7a40Y40del1TaCGa-22R.10.00018
ORF7a40Y40del1Tac-ac11AY.1130.000142
ORF7a40Y40del1Tac-ac11AY.1190.000035
ORF7a40Y40del1Tac-ac11AY.240.000431
ORF7a40Y40del1Tac-ac11AY.260.000028
ORF7a40Y40del1Tac-ac11AY.390.000025
ORF7a40Y40del1taCta-11AY.46.40.000165
ORF7a40Y40del1Tac-ac11AY.46.60.000072
ORF7a40Y40del1Tac-ac11AY.470.000031
ORF7a40Y40del1Tac-ac11AY.50.000021
ORF7a40Y40del1Tac-ac11AY.790.001211
ORF7a40Y40del1Tac-ac11B.1.6300.005236
ORF7a40Y40del1Tac-ac11P.1.40.000977