CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = Y40del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a40Y40deldelTAC---19211921127511-27513

Details of the mutation Y40del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a40Y40delTAC---19211921All0.000367
ORF7a40Y40delTAC---352352B.1.1.70.000315
ORF7a40Y40delTAC---264264AY.40.000411
ORF7a40Y40delTAC---219219B.1.617.20.000825
ORF7a40Y40delTAC---179179B.1.177.210.013688
ORF7a40Y40delTAC---158158AY.250.00095
ORF7a40Y40delTAC---7575AY.1030.000466
ORF7a40Y40delTAC---4949AY.30.000487
ORF7a40Y40delTAC---4949AY.3.10.004178
ORF7a40Y40delTAC---4646AY.290.000726
ORF7a40Y40delTAC---4545AY.440.000274
ORF7a40Y40delTAC---3636B.1.1.2840.003866
ORF7a40Y40delTAC---3232B.1.6210.002833
ORF7a40Y40delTAC---3030AY.430.000133
ORF7a40Y40delTAC---2727B.10.000247
ORF7a40Y40delTAC---2323B.1.1.2140.001276
ORF7a40Y40delTAC---1919AY.7.20.010626
ORF7a40Y40delTAC---1515AY.390.000371
ORF7a40Y40delTAC---1212AY.46.40.001974
ORF7a40Y40delTAC---1212B.1.3240.019262
ORF7a40Y40delTAC---1111AY.470.000342
ORF7a40Y40delTAC---1111C.370.001277
ORF7a40Y40delTAC---1010AY.200.000389
ORF7a40Y40delTAC---1010B.1.1770.000132
ORF7a40Y40delTAC---99AY.1000.000414
ORF7a40Y40delTAC---99AY.230.000628
ORF7a40Y40delTAC---99AY.260.000255
ORF7a40Y40delTAC---99P.10.000142
ORF7a40Y40delTAC---88B.1.20.00007
ORF7a40Y40delTAC---66B.1.4290.000141
ORF7a40Y40delTAC---66B.1.5260.000141
ORF7a40Y40delTAC---66B.1.6370.000438
ORF7a40Y40delTAC---55AY.98.10.000242
ORF7a40Y40delTAC---55B.1.10.000091
ORF7a40Y40delTAC---55B.1.1.560.089286
ORF7a40Y40delTAC---55B.1.1600.000156
ORF7a40Y40delTAC---55B.1.177.440.002595
ORF7a40Y40delTAC---55B.1.5250.000566
ORF7a40Y40delTAC---44AY.1210.000541
ORF7a40Y40delTAC---44AY.4.20.000087
ORF7a40Y40delTAC---44AY.50.000083
ORF7a40Y40delTAC---33AY.1020.00008
ORF7a40Y40delTAC---33AY.1180.000188
ORF7a40Y40delTAC---33AY.1200.000112
ORF7a40Y40delTAC---33AY.330.0002
ORF7a40Y40delTAC---33AY.350.000699
ORF7a40Y40delTAC---33AY.4.50.000322
ORF7a40Y40delTAC---33AY.420.000121
ORF7a40Y40delTAC---33AY.540.000286
ORF7a40Y40delTAC---33AY.750.000168
ORF7a40Y40delTAC---33AY.90.000203
ORF7a40Y40delTAC---33B.1.1.250.001706
ORF7a40Y40delTAC---33B.1.2340.000396
ORF7a40Y40delTAC---33B.1.6260.017143
ORF7a40Y40delTAC---33Q.80.000495
ORF7a40Y40delTAC---22A0.000774
ORF7a40Y40delTAC---22A.280.005291
ORF7a40Y40delTAC---22AY.1100.000225
ORF7a40Y40delTAC---22AY.1140.000462
ORF7a40Y40delTAC---22AY.1190.000071
ORF7a40Y40delTAC---22AY.120.10.000642
ORF7a40Y40delTAC---22AY.29.10.000441
ORF7a40Y40delTAC---22AY.340.000194
ORF7a40Y40delTAC---22B.1.177.430.002954
ORF7a40Y40delTAC---22B.1.177.860.000367
ORF7a40Y40delTAC---22B.1.258.110.000793
ORF7a40Y40delTAC---22B.1.3510.000059
ORF7a40Y40delTAC---22B.1.360.000292
ORF7a40Y40delTAC---22B.1.5960.000174
ORF7a40Y40delTAC---22C.36.30.001134
ORF7a40Y40delTAC---22R.10.00018
ORF7a40Y40delTAC---11A.10.000282
ORF7a40Y40delTAC---11AY.1080.001103
ORF7a40Y40delTAC---11AY.1130.000142
ORF7a40Y40delTAC---11AY.120.000316
ORF7a40Y40delTAC---11AY.130.000161
ORF7a40Y40delTAC---11AY.160.00038
ORF7a40Y40delTAC---11AY.16.10.00047
ORF7a40Y40delTAC---11AY.39.10.00004
ORF7a40Y40delTAC---11AY.450.000122
ORF7a40Y40delTAC---11AY.460.000104
ORF7a40Y40delTAC---11AY.5.40.000277
ORF7a40Y40delTAC---11AY.60.000041
ORF7a40Y40delTAC---11AY.610.000105
ORF7a40Y40delTAC---11AY.660.00107
ORF7a40Y40delTAC---11AY.730.000665
ORF7a40Y40delTAC---11AY.740.000116
ORF7a40Y40delTAC---11AY.760.004831
ORF7a40Y40delTAC---11AY.790.001211
ORF7a40Y40delTAC---11AY.850.000427
ORF7a40Y40delTAC---11AY.9.10.000084
ORF7a40Y40delTAC---11AY.9.20.000037
ORF7a40Y40delTAC---11AY.920.000287
ORF7a40Y40delTAC---11AY.940.000443
ORF7a40Y40delTAC---11AY.980.000079
ORF7a40Y40delTAC---11AY.99.20.000092
ORF7a40Y40delTAC---11B0.000128
ORF7a40Y40delTAC---11B.1.1.2070.001182
ORF7a40Y40delTAC---11B.1.1.2220.000204
ORF7a40Y40delTAC---11B.1.1.2770.000759
ORF7a40Y40delTAC---11B.1.1.3180.000302
ORF7a40Y40delTAC---11B.1.1.330.000421
ORF7a40Y40delTAC---11B.1.1.5190.00004
ORF7a40Y40delTAC---11B.1.1.5220.017241
ORF7a40Y40delTAC---11B.1.1150.021739
ORF7a40Y40delTAC---11B.1.177.620.001192
ORF7a40Y40delTAC---11B.1.177.800.001912
ORF7a40Y40delTAC---11B.1.177.810.000189
ORF7a40Y40delTAC---11B.1.177.830.001481
ORF7a40Y40delTAC---11B.1.214.20.0006
ORF7a40Y40delTAC---11B.1.2210.000071
ORF7a40Y40delTAC---11B.1.2400.000216
ORF7a40Y40delTAC---11B.1.2430.00007
ORF7a40Y40delTAC---11B.1.258.170.000104
ORF7a40Y40delTAC---11B.1.351.20.000303
ORF7a40Y40delTAC---11B.1.4270.00005
ORF7a40Y40delTAC---11B.1.438.10.000107
ORF7a40Y40delTAC---11B.1.4590.004082
ORF7a40Y40delTAC---11B.1.466.20.000391
ORF7a40Y40delTAC---11B.1.4680.005714
ORF7a40Y40delTAC---11B.1.4700.001404
ORF7a40Y40delTAC---11B.1.5350.028571
ORF7a40Y40delTAC---11B.1.5820.000491
ORF7a40Y40delTAC---11B.1.617.30.002985
ORF7a40Y40delTAC---11B.1.6200.000946
ORF7a40Y40delTAC---11B.1.6360.006711
ORF7a40Y40delTAC---11B.1.6380.052632
ORF7a40Y40delTAC---11P.1.150.000232
ORF7a40Y40delTAC---11P.1.160.000374
ORF7a40Y40delTAC---11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.