CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = Y40S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a40Y40SnonsyntActCc31180.58064527511-27513
ORF7a40Y40SnonsyntACtCT3170.22580627511-27513
ORF7a40Y40SnonsyntACtCA3160.19354827511-27513

Details of the mutation Y40S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a40Y40StActCc1831All0.000003
ORF7a40Y40StACtCT731All0.000001
ORF7a40Y40StACtCA631All0.000001
ORF7a40Y40StActCc411B.10.000037
ORF7a40Y40StACtCT411B.10.000037
ORF7a40Y40StACtCA311B.10.000027
ORF7a40Y40StACtCT24AY.250.000012
ORF7a40Y40StACtCA14AY.250.000006
ORF7a40Y40StActCc14AY.250.000006
ORF7a40Y40StActCc33AY.440.000018
ORF7a40Y40StACtCA13B.1.10.000018
ORF7a40Y40StACtCT13B.1.10.000018
ORF7a40Y40StActCc13B.1.10.000018
ORF7a40Y40StACtCA12B.1.1770.000013
ORF7a40Y40StActCc12B.1.1770.000013
ORF7a40Y40StActCc11AY.1030.000006
ORF7a40Y40StActCc11B.1.1.4160.000905
ORF7a40Y40StActCc11B.1.1110.001175
ORF7a40Y40StActCc11B.1.3110.000275
ORF7a40Y40StActCc11B.1.360.000146
ORF7a40Y40StActCc11B.1.4170.028571
ORF7a40Y40StActCc11B.1.617.20.000004
ORF7a40Y40StActCc11P.1.10.000318