CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = Y40H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a40Y40HnonsynTacCac106210580.99623427511-27513
ORF7a40Y40HnonsynTaCCaT106240.0037664827511-27513

Details of the mutation Y40H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a40Y40HTacCac10581062All0.000202
ORF7a40Y40HTaCCaT41062All0.000001
ORF7a40Y40HTacCac334334B.1.1.70.000299
ORF7a40Y40HTacCac287287AY.40.000447
ORF7a40Y40HTacCac4646AY.430.000204
ORF7a40Y40HTacCac3535AY.1030.000217
ORF7a40Y40HTacCac3333B.1.6370.002411
ORF7a40Y40HTacCac2626B.1.617.20.000098
ORF7a40Y40HTacCac2424AY.250.000144
ORF7a40Y40HTacCac2222P.10.000347
ORF7a40Y40HTacCac1919B.10.000174
ORF7a40Y40HTacCac1818AY.270.001165
ORF7a40Y40HTacCac1414AY.1060.004689
ORF7a40Y40HTacCac1213AY.30.000119
ORF7a40Y40HTaCCaT113AY.30.00001
ORF7a40Y40HTacCac1313AY.440.000079
ORF7a40Y40HTacCac1010P.1.70.003193
ORF7a40Y40HTacCac99AY.1110.001648
ORF7a40Y40HTacCac99AY.260.000255
ORF7a40Y40HTacCac88AY.390.000198
ORF7a40Y40HTacCac77B.1.6210.00062
ORF7a40Y40HTacCac66AY.3.10.000512
ORF7a40Y40HTacCac66B.1.20.000053
ORF7a40Y40HTacCac55AY.1090.003698
ORF7a40Y40HTacCac240.111111
ORF7a40Y40HTaCCaT240.111111
ORF7a40Y40HTacCac44AY.1000.000184
ORF7a40Y40HTacCac44AY.4.20.000087
ORF7a40Y40HTacCac44AY.540.000381
ORF7a40Y40HTacCac44B.1.1.1760.001757
ORF7a40Y40HTacCac44B.1.1280.002541
ORF7a40Y40HTacCac44B.1.1600.000125
ORF7a40Y40HTacCac44P.1.100.001078
ORF7a40Y40HTacCac33AY.1020.00008
ORF7a40Y40HTacCac33AY.140.000264
ORF7a40Y40HTacCac33AY.46.60.000217
ORF7a40Y40HTacCac33B.1.10.000054
ORF7a40Y40HTacCac33B.1.1.5190.000119
ORF7a40Y40HTacCac22AY.1140.000462
ORF7a40Y40HTacCac22AY.1170.000169
ORF7a40Y40HTacCac22AY.1190.000071
ORF7a40Y40HTacCac22AY.130.000322
ORF7a40Y40HTacCac22AY.230.000139
ORF7a40Y40HTacCac22AY.470.000062
ORF7a40Y40HTacCac22AY.490.00639
ORF7a40Y40HTacCac22AZ.20.001642
ORF7a40Y40HTacCac22B.1.1.2100.011429
ORF7a40Y40HTacCac22B.1.1.2220.000408
ORF7a40Y40HTacCac22B.1.1.3720.001377
ORF7a40Y40HTacCac22B.1.2430.000139
ORF7a40Y40HTacCac22B.1.36.100.009569
ORF7a40Y40HTacCac22B.1.4290.000047
ORF7a40Y40HTacCac22B.1.5960.000174
ORF7a40Y40HTacCac22B.1.617.10.000258
ORF7a40Y40HTacCac11AM.40.003571
ORF7a40Y40HTacCac11AY.1160.000287
ORF7a40Y40HTacCac11AY.200.000039
ORF7a40Y40HTacCac11AY.290.000016
ORF7a40Y40HTacCac11AY.39.10.00004
ORF7a40Y40HTacCac11AY.450.000122
ORF7a40Y40HTacCac11AY.46.40.000165
ORF7a40Y40HTacCac11AY.46.50.000198
ORF7a40Y40HTacCac11AY.660.00107
ORF7a40Y40HTacCac11AY.770.001127
ORF7a40Y40HTacCac11AY.820.001357
ORF7a40Y40HTacCac11AY.90.000068
ORF7a40Y40HTacCac11AY.9.20.000037
ORF7a40Y40HTacCac11AY.930.000273
ORF7a40Y40HTacCac11AY.98.10.000048
ORF7a40Y40HTacCac11AY.99.20.000092
ORF7a40Y40HTacCac11B.1.1.3480.000796
ORF7a40Y40HTacCac11B.1.1770.000013
ORF7a40Y40HTaCCaT11B.1.177.630.002703
ORF7a40Y40HTacCac11B.1.177.70.000165
ORF7a40Y40HTacCac11B.1.2210.000071
ORF7a40Y40HTacCac11B.1.258.170.000104
ORF7a40Y40HTacCac11B.1.3510.00003
ORF7a40Y40HTacCac11B.1.36.160.001425
ORF7a40Y40HTacCac11B.1.36.80.001
ORF7a40Y40HTacCac11B.1.416.10.001563
ORF7a40Y40HTacCac11B.1.4680.005714
ORF7a40Y40HTacCac11B.1.5250.000113
ORF7a40Y40HTacCac11B.1.5260.000024
ORF7a40Y40HTacCac11B.1.5640.000426
ORF7a40Y40HTacCac11B.1.6280.000352
ORF7a40Y40HTacCac11B.1.88.10.004808
ORF7a40Y40HTacCac11C.1.20.004255
ORF7a40Y40HTacCac11D.20.000075
ORF7a40Y40HTacCac11P.1.140.000048
ORF7a40Y40HTacCac11P.1.150.000232
ORF7a40Y40HTacCac11Q.80.000165
ORF7a40Y40HTacCac11R.10.00009
ORF7a40Y40HTacCac11S.10.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.