CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = Y40C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a40Y40CnonsyntActGc88720.81818227511-27513
ORF7a40Y40CnonsyntACtGT88160.18181827511-27513

Details of the mutation Y40C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a40Y40CtActGc7288All0.000014
ORF7a40Y40CtACtGT1688All0.000003
ORF7a40Y40CtActGc1830B.1.1.70.000016
ORF7a40Y40CtACtGT1230B.1.1.70.000011
ORF7a40Y40CtActGc1111AY.40.000017
ORF7a40Y40CtActGc79B.1.617.20.000026
ORF7a40Y40CtACtGT29B.1.617.20.000008
ORF7a40Y40CtActGc66AY.260.00017
ORF7a40Y40CtActGc33AY.30.00003
ORF7a40Y40CtActGc33P.1.10.000953
ORF7a40Y40CtACtGT12B.1.1600.000031
ORF7a40Y40CtActGc12B.1.1600.000031
ORF7a40Y40CtActGc22B.1.20.000018
ORF7a40Y40CtActGc22B.1.6210.000177
ORF7a40Y40CtActGc11AY.100.00053
ORF7a40Y40CtActGc11AY.1030.000006
ORF7a40Y40CtActGc11AY.1180.000063
ORF7a40Y40CtActGc11AY.1200.000037
ORF7a40Y40CtACtGT11AY.250.000006
ORF7a40Y40CtActGc11AY.300.000396
ORF7a40Y40CtActGc11AY.390.000025
ORF7a40Y40CtActGc11AY.430.000004
ORF7a40Y40CtActGc11AY.450.000122
ORF7a40Y40CtActGc11AY.5.40.000277
ORF7a40Y40CtActGc11AY.530.000288
ORF7a40Y40CtActGc11B.1.177.70.000165
ORF7a40Y40CtActGc11B.1.3510.00003
ORF7a40Y40CtActGc11B.1.36.80.001
ORF7a40Y40CtActGc11B.1.4090.000781
ORF7a40Y40CtActGc11B.1.4270.00005
ORF7a40Y40CtActGc11B.1.5670.003333
ORF7a40Y40CtActGc11B.1.5960.000087
ORF7a40Y40CtActGc11P.10.000016
ORF7a40Y40CtActGc11P.1.160.000374