CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = X122X

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a122X122XsyntGatAa8608570.99651227757-27759
ORF7a122X122XsyntGAtAG86030.0034883727757-27759

Details of the mutation X122X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a122X122XtGatAa857860All0.000164
ORF7a122X122XtGAtAG3860All0.000001
ORF7a122X122XtGatAa231231B.1.1.70.000207
ORF7a122X122XtGatAa116116AY.40.000181
ORF7a122X122XtGatAa5050B.1.617.20.000188
ORF7a122X122XtGatAa3434AY.1030.000211
ORF7a122X122XtGatAa3434AY.440.000207
ORF7a122X122XtGatAa2020B.1.20.000176
ORF7a122X122XtGatAa1919AY.250.000114
ORF7a122X122XtGatAa1616AY.1020.000424
ORF7a122X122XtGatAa1616P.10.000252
ORF7a122X122XtGatAa1414AY.30.000139
ORF7a122X122XtGatAa1313AY.460.001353
ORF7a122X122XtGatAa1313B.10.000119
ORF7a122X122XtGatAa1212AY.70.002352
ORF7a122X122XtGatAa1212D.20.0009
ORF7a122X122XtGatAa1010AY.9.20.000367
ORF7a122X122XtGatAa1010B.1.3510.000297
ORF7a122X122XtGatAa99P.1.40.008789
ORF7a122X122XtGatAa88B.1.10.000145
ORF7a122X122XtGatAa77AY.1170.000592
ORF7a122X122XtGatAa67AY.430.000027
ORF7a122X122XtGAtAG17AY.430.000004
ORF7a122X122XtGatAa77C.370.000812
ORF7a122X122XtGatAa66AY.690.00112
ORF7a122X122XtGatAa66B.1.1.2140.000333
ORF7a122X122XtGatAa66B.1.4290.000141
ORF7a122X122XtGatAa66B.1.5260.000141
ORF7a122X122XtGatAa66B.1.5750.00182
ORF7a122X122XtGatAa350.166667
ORF7a122X122XtGAtAG250.111111
ORF7a122X122XtGatAa55AY.1080.005513
ORF7a122X122XtGatAa55AY.200.000194
ORF7a122X122XtGatAa55AY.260.000142
ORF7a122X122XtGatAa55AY.9.10.000419
ORF7a122X122XtGatAa55B.1.1770.000066
ORF7a122X122XtGatAa44A.280.010582
ORF7a122X122XtGatAa33AY.1190.000106
ORF7a122X122XtGatAa33AY.4.2.10.000447
ORF7a122X122XtGatAa33AY.50.000062
ORF7a122X122XtGatAa33AY.750.000168
ORF7a122X122XtGatAa33B.1.1.5190.000119
ORF7a122X122XtGatAa33B.1.177.810.000568
ORF7a122X122XtGatAa33B.1.2340.000396
ORF7a122X122XtGatAa33B.1.5770.002062
ORF7a122X122XtGatAa33P.1.140.000143
ORF7a122X122XtGatAa22AY.1000.000092
ORF7a122X122XtGatAa22AY.1050.001286
ORF7a122X122XtGatAa22AY.1180.000125
ORF7a122X122XtGatAa22AY.1200.000074
ORF7a122X122XtGatAa22AY.140.000176
ORF7a122X122XtGatAa22AY.290.000032
ORF7a122X122XtGatAa22AY.370.000632
ORF7a122X122XtGatAa22AY.4.20.000043
ORF7a122X122XtGatAa22AY.590.001059
ORF7a122X122XtGatAa22AY.60.000082
ORF7a122X122XtGatAa22AY.680.000547
ORF7a122X122XtGatAa22AY.740.000231
ORF7a122X122XtGatAa22AY.75.10.000361
ORF7a122X122XtGatAa22AY.850.000854
ORF7a122X122XtGatAa22B.1.1.1590.009346
ORF7a122X122XtGatAa22B.1.1.4200.002012
ORF7a122X122XtGatAa22B.1.177.210.000153
ORF7a122X122XtGatAa22B.1.2140.007326
ORF7a122X122XtGatAa22B.1.2430.000139
ORF7a122X122XtGatAa22B.1.2580.000133
ORF7a122X122XtGatAa22B.1.3060.011429
ORF7a122X122XtGatAa22B.1.360.000292
ORF7a122X122XtGatAa22B.1.4590.008163
ORF7a122X122XtGatAa22B.1.6210.000177
ORF7a122X122XtGatAa22B.1.6280.000705
ORF7a122X122XtGatAa22B.1.6370.000146
ORF7a122X122XtGatAa22C.360.001821
ORF7a122X122XtGatAa11AY.1130.000142
ORF7a122X122XtGatAa11AY.120.10.000321
ORF7a122X122XtGatAa11AY.130.000161
ORF7a122X122XtGatAa11AY.16.10.00047
ORF7a122X122XtGatAa11AY.230.00007
ORF7a122X122XtGatAa11AY.270.000065
ORF7a122X122XtGatAa11AY.280.00189
ORF7a122X122XtGatAa11AY.340.000097
ORF7a122X122XtGatAa11AY.390.000025
ORF7a122X122XtGatAa11AY.39.10.00004
ORF7a122X122XtGatAa11AY.4.50.000107
ORF7a122X122XtGatAa11AY.400.000964
ORF7a122X122XtGatAa11AY.420.00004
ORF7a122X122XtGatAa11AY.46.40.000165
ORF7a122X122XtGatAa11AY.46.60.000072
ORF7a122X122XtGatAa11AY.470.000031
ORF7a122X122XtGatAa11AY.480.000465
ORF7a122X122XtGatAa11AY.5.40.000277
ORF7a122X122XtGatAa11AY.540.000095
ORF7a122X122XtGatAa11AY.550.000917
ORF7a122X122XtGatAa11AY.670.000464
ORF7a122X122XtGatAa11AY.7.10.000113
ORF7a122X122XtGatAa11AY.980.000079
ORF7a122X122XtGatAa11AY.98.10.000048
ORF7a122X122XtGatAa11AY.990.001049
ORF7a122X122XtGatAa11AZ.20.000821
ORF7a122X122XtGatAa11B0.000128
ORF7a122X122XtGatAa11B.1.1.1740.003378
ORF7a122X122XtGatAa11B.1.1.2050.003717
ORF7a122X122XtGatAa11B.1.1.2400.004695
ORF7a122X122XtGatAa11B.1.1.2840.000107
ORF7a122X122XtGatAa11B.1.1.3050.003861
ORF7a122X122XtGatAa11B.1.1.3180.000302
ORF7a122X122XtGatAa11B.1.1.3260.001761
ORF7a122X122XtGatAa11B.1.1.370.000193
ORF7a122X122XtGatAa11B.1.160.70.002079
ORF7a122X122XtGatAa11B.1.177.70.000165
ORF7a122X122XtGatAa11B.1.177.730.000566
ORF7a122X122XtGatAa11B.1.177.860.000183
ORF7a122X122XtGatAa11B.1.1950.005025
ORF7a122X122XtGatAa11B.1.258.170.000104
ORF7a122X122XtGatAa11B.1.4080.00369
ORF7a122X122XtGatAa11B.1.4270.00005
ORF7a122X122XtGatAa11B.1.4700.001404
ORF7a122X122XtGatAa11B.1.4990.00105
ORF7a122X122XtGatAa11B.1.5090.000866
ORF7a122X122XtGatAa11B.1.5170.000427
ORF7a122X122XtGatAa11B.1.5960.000087
ORF7a122X122XtGatAa11B.1.617.30.002985
ORF7a122X122XtGatAa11B.1.6290.013333
ORF7a122X122XtGatAa11N.30.005814
ORF7a122X122XtGatAa11P.1.170.000162
ORF7a122X122XtGatAa11P.1.60.001946
ORF7a122X122XtGatAa11P.1.80.004785
ORF7a122X122XtGatAa11P.20.000187
ORF7a122X122XtGatAa11Q.10.000126
ORF7a122X122XtGatAa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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