CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = X122C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a122X122CnonsyntgAtgT1571260.80254827757-27759
ORF7a122X122CnonsyntgAtgC157310.19745227757-27759

Details of the mutation X122C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a122X122CtgAtgT126157All0.000024
ORF7a122X122CtgAtgC31157All0.000006
ORF7a122X122CtgAtgT4454B.1.1.70.000039
ORF7a122X122CtgAtgC1054B.1.1.70.000009
ORF7a122X122CtgAtgT1414AY.390.000346
ORF7a122X122CtgAtgT1212P.10.000189
ORF7a122X122CtgAtgT1111B.1.617.20.000041
ORF7a122X122CtgAtgT69AY.40.000009
ORF7a122X122CtgAtgC39AY.40.000005
ORF7a122X122CtgAtgT88B.1.1470.006047
ORF7a122X122CtgAtgT78B.1.20.000062
ORF7a122X122CtgAtgC18B.1.20.000009
ORF7a122X122CtgAtgC24B.10.000018
ORF7a122X122CtgAtgT24B.10.000018
ORF7a122X122CtgAtgC44B.1.5770.002749
ORF7a122X122CtgAtgT33AY.1030.000019
ORF7a122X122CtgAtgC23B.1.1.5190.000079
ORF7a122X122CtgAtgT13B.1.1.5190.00004
ORF7a122X122CtgAtgT22AY.440.000012
ORF7a122X122CtgAtgT11AY.1020.000027
ORF7a122X122CtgAtgT11AY.1190.000035
ORF7a122X122CtgAtgC11AY.1200.000037
ORF7a122X122CtgAtgC11AY.350.000233
ORF7a122X122CtgAtgC11AY.4.40.000409
ORF7a122X122CtgAtgT11AY.4.50.000107
ORF7a122X122CtgAtgC11AY.470.000031
ORF7a122X122CtgAtgC11AY.60.000041
ORF7a122X122CtgAtgT11AY.90.000068
ORF7a122X122CtgAtgC11AY.980.000079
ORF7a122X122CtgAtgT11AY.99.10.001553
ORF7a122X122CtgAtgT11B.1.10.000018
ORF7a122X122CtgAtgC11B.1.1.2140.000055
ORF7a122X122CtgAtgT11B.1.1.500.000679
ORF7a122X122CtgAtgT11B.1.1.570.011494
ORF7a122X122CtgAtgT11B.1.1.630.000386
ORF7a122X122CtgAtgC11B.1.1770.000013
ORF7a122X122CtgAtgT11B.1.2650.001271
ORF7a122X122CtgAtgT11B.1.351.20.000303
ORF7a122X122CtgAtgT11B.1.4290.000024
ORF7a122X122CtgAtgT11B.1.6230.000536
ORF7a122X122CtgAtgC11C.370.000116
ORF7a122X122CtgAtgT11D.20.000075
ORF7a122X122CtgAtgT11P.1.150.000232
ORF7a122X122CtgAtgT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.