CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF7a : Mut = V82del1
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF7a | 82 | V82del1 | del | Gtt | -tt | 326 | 263 | 0.806748 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | gTt | g-t | 326 | 20 | 0.0613497 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | gTT | gC- | 326 | 17 | 0.0521472 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | gtT | gt- | 326 | 11 | 0.0337423 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | GTt | -Ct | 326 | 7 | 0.0214724 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | GTT | -CA | 326 | 2 | 0.00613497 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | gTT | g-C | 326 | 2 | 0.00613497 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | GTT | -NN | 326 | 2 | 0.00613497 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | GtT | -tN | 326 | 1 | 0.00306748 | 27637-27639 | |
| ORF7a | 82 | V82del1 | del | GtT | -tA | 326 | 1 | 0.00306748 | 27637-27639 |
Details of the mutation V82del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF7a | 82 | V82del1 | Gtt | -tt | 263 | 326 | All | 0.00005 |
| ORF7a | 82 | V82del1 | gTt | g-t | 20 | 326 | All | 0.000004 |
| ORF7a | 82 | V82del1 | gTT | gC- | 17 | 326 | All | 0.000003 |
| ORF7a | 82 | V82del1 | gtT | gt- | 11 | 326 | All | 0.000002 |
| ORF7a | 82 | V82del1 | GTt | -Ct | 7 | 326 | All | 0.000001 |
| ORF7a | 82 | V82del1 | GTT | -CA | 2 | 326 | All | 0 |
| ORF7a | 82 | V82del1 | gTT | g-C | 2 | 326 | All | 0 |
| ORF7a | 82 | V82del1 | GTT | -NN | 2 | 326 | All | 0 |
| ORF7a | 82 | V82del1 | GtT | -tN | 1 | 326 | All | 0 |
| ORF7a | 82 | V82del1 | GtT | -tA | 1 | 326 | All | 0 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 90 | 100 | AY.4 | 0.00014 |
| ORF7a | 82 | V82del1 | gTT | gC- | 5 | 100 | AY.4 | 0.000008 |
| ORF7a | 82 | V82del1 | GTt | -Ct | 5 | 100 | AY.4 | 0.000008 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 70 | 78 | B.1.1.7 | 0.000063 |
| ORF7a | 82 | V82del1 | gTt | g-t | 5 | 78 | B.1.1.7 | 0.000004 |
| ORF7a | 82 | V82del1 | gtT | gt- | 3 | 78 | B.1.1.7 | 0.000003 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 51 | 51 | AY.26 | 0.001444 |
| ORF7a | 82 | V82del1 | gTT | gC- | 7 | 8 | AY.103 | 0.000043 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 8 | AY.103 | 0.000006 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 8 | 8 | AY.116 | 0.002294 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 6 | 6 | AY.4.2 | 0.00013 |
| ORF7a | 82 | V82del1 | GTT | -CA | 2 | 6 | AY.43 | 0.000009 |
| ORF7a | 82 | V82del1 | gTT | gC- | 1 | 6 | AY.43 | 0.000004 |
| ORF7a | 82 | V82del1 | GTT | -NN | 1 | 6 | AY.43 | 0.000004 |
| ORF7a | 82 | V82del1 | GtT | -tA | 1 | 6 | AY.43 | 0.000004 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 6 | AY.43 | 0.000004 |
| ORF7a | 82 | V82del1 | gTt | g-t | 3 | 5 | AY.39 | 0.000074 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 5 | AY.39 | 0.000049 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 5 | 5 | B.1.70 | 0.121951 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 3 | AY.3 | 0.00001 |
| ORF7a | 82 | V82del1 | GTt | -Ct | 1 | 3 | AY.3 | 0.00001 |
| ORF7a | 82 | V82del1 | gTT | gC- | 1 | 3 | AY.3 | 0.00001 |
| ORF7a | 82 | V82del1 | gTT | gC- | 2 | 3 | AY.44 | 0.000012 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 3 | AY.44 | 0.000006 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 3 | 3 | B.1.1 | 0.000054 |
| ORF7a | 82 | V82del1 | gTT | g-C | 1 | 3 | B.1.617.2 | 0.000004 |
| ORF7a | 82 | V82del1 | GTt | -Ct | 1 | 3 | B.1.617.2 | 0.000004 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 3 | B.1.617.2 | 0.000004 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | AY.113 | 0.000285 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | AY.120.1 | 0.000642 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | AY.7 | 0.000392 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | B.1.1.519 | 0.000079 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | B.1.177.55 | 0.004662 |
| ORF7a | 82 | V82del1 | gtT | gt- | 2 | 2 | B.1.351.3 | 0.001753 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | B.1.596 | 0.000174 |
| ORF7a | 82 | V82del1 | gTt | g-t | 2 | 2 | B.1.617.1 | 0.000258 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | A.23 | 0.010526 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AU.3 | 0.00211 |
| ORF7a | 82 | V82del1 | gTT | g-C | 1 | 1 | AY.102 | 0.000027 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | AY.16 | 0.00038 |
| ORF7a | 82 | V82del1 | gTT | gC- | 1 | 1 | AY.3.1 | 0.000085 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.34 | 0.000097 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.36 | 0.000148 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.39.1 | 0.00004 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.48 | 0.000465 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.5 | 0.000021 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | AY.50 | 0.000799 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.54 | 0.000095 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.61 | 0.000105 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.7.2 | 0.000559 |
| ORF7a | 82 | V82del1 | GtT | -tN | 1 | 1 | B.1 | 0.000009 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | B.1.1.214 | 0.000055 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | B.1.1.284 | 0.000107 |
| ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.160 | 0.000031 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.177 | 0.000013 |
| ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.177.15 | 0.000631 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.214 | 0.003663 |
| ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | B.1.234 | 0.000132 |
| ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.243 | 0.00007 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.247 | 0.014925 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.36 | 0.000146 |
| ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.36.31 | 0.001751 |
| ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.427 | 0.00005 |
| ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.526 | 0.000024 |
| ORF7a | 82 | V82del1 | GTT | -NN | 1 | 1 | B.1.568 | 0.001111 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.617.3 | 0.002985 |
| ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | P.1 | 0.000016 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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