CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 71 | V71L | nonsyn | Gta | Tta | 1441 | 1412 | 0.979875 | 27604-27606 | |
ORF7a | 71 | V71L | nonsyn | Gta | Cta | 1441 | 26 | 0.018043 | 27604-27606 | |
ORF7a | 71 | V71L | nonsyn | GtA | TtG | 1441 | 1 | 0.000693963 | 27604-27606 | |
ORF7a | 71 | V71L | nonsyn | GtA | CtG | 1441 | 1 | 0.000693963 | 27604-27606 | |
ORF7a | 71 | V71L | nonsyn | GtA | CtT | 1441 | 1 | 0.000693963 | 27604-27606 |
Details of the mutation V71L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 71 | V71L | Gta | Tta | 1412 | 1441 | All | 0.00027 |
ORF7a | 71 | V71L | Gta | Cta | 26 | 1441 | All | 0.000005 |
ORF7a | 71 | V71L | GtA | CtG | 1 | 1441 | All | 0 |
ORF7a | 71 | V71L | GtA | CtT | 1 | 1441 | All | 0 |
ORF7a | 71 | V71L | GtA | TtG | 1 | 1441 | All | 0 |
ORF7a | 71 | V71L | Gta | Tta | 211 | 211 | AY.120 | 0.007845 |
ORF7a | 71 | V71L | Gta | Tta | 197 | 205 | B.1.1.7 | 0.000176 |
ORF7a | 71 | V71L | Gta | Cta | 8 | 205 | B.1.1.7 | 0.000007 |
ORF7a | 71 | V71L | Gta | Tta | 190 | 190 | AY.26 | 0.005379 |
ORF7a | 71 | V71L | Gta | Tta | 161 | 161 | A.29 | 0.856383 |
ORF7a | 71 | V71L | Gta | Tta | 73 | 73 | B.1.1.519 | 0.002899 |
ORF7a | 71 | V71L | Gta | Tta | 61 | 64 | AY.4 | 0.000095 |
ORF7a | 71 | V71L | Gta | Cta | 3 | 64 | AY.4 | 0.000005 |
ORF7a | 71 | V71L | Gta | Tta | 56 | 58 | B.1.617.2 | 0.000211 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 58 | B.1.617.2 | 0.000004 |
ORF7a | 71 | V71L | GtA | CtG | 1 | 58 | B.1.617.2 | 0.000004 |
ORF7a | 71 | V71L | Gta | Tta | 46 | 46 | P.1 | 0.000725 |
ORF7a | 71 | V71L | Gta | Tta | 41 | 42 | AY.25 | 0.000247 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 42 | AY.25 | 0.000006 |
ORF7a | 71 | V71L | Gta | Tta | 30 | 30 | AY.46.6 | 0.002166 |
ORF7a | 71 | V71L | Gta | Tta | 25 | 25 | B.1.160 | 0.00078 |
ORF7a | 71 | V71L | Gta | Tta | 24 | 24 | B.1.1.70 | 0.008186 |
ORF7a | 71 | V71L | Gta | Tta | 23 | 23 | AY.43 | 0.000102 |
ORF7a | 71 | V71L | Gta | Tta | 18 | 21 | AY.44 | 0.00011 |
ORF7a | 71 | V71L | Gta | Cta | 2 | 21 | AY.44 | 0.000012 |
ORF7a | 71 | V71L | GtA | TtG | 1 | 21 | AY.44 | 0.000006 |
ORF7a | 71 | V71L | Gta | Tta | 16 | 18 | AY.103 | 0.000099 |
ORF7a | 71 | V71L | Gta | Cta | 2 | 18 | AY.103 | 0.000012 |
ORF7a | 71 | V71L | Gta | Tta | 18 | 18 | B.1.1.176 | 0.007909 |
ORF7a | 71 | V71L | Gta | Tta | 16 | 16 | B.1.628 | 0.005638 |
ORF7a | 71 | V71L | Gta | Tta | 14 | 14 | B.1 | 0.000128 |
ORF7a | 71 | V71L | Gta | Tta | 13 | 13 | B.1.575 | 0.003944 |
ORF7a | 71 | V71L | Gta | Tta | 13 | 13 | B.1.638 | 0.684211 |
ORF7a | 71 | V71L | Gta | Tta | 8 | 8 | B.1.177 | 0.000105 |
ORF7a | 71 | V71L | Gta | Tta | 7 | 7 | B.1.1.214 | 0.000388 |
ORF7a | 71 | V71L | Gta | Tta | 6 | 7 | B.1.2 | 0.000053 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 7 | B.1.2 | 0.000009 |
ORF7a | 71 | V71L | Gta | Tta | 6 | 6 | AY.3 | 0.00006 |
ORF7a | 71 | V71L | Gta | Tta | 6 | 6 | AY.99.2 | 0.000553 |
ORF7a | 71 | V71L | Gta | Tta | 5 | 5 | B.1.177.53 | 0.011962 |
ORF7a | 71 | V71L | Gta | Tta | 5 | 5 | C.16 | 0.005302 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 4 | AY.102 | 0.00008 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 4 | AY.102 | 0.000027 |
ORF7a | 71 | V71L | Gta | Tta | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 71 | V71L | Gta | Tta | 4 | 4 | B.1.1.222 | 0.000816 |
ORF7a | 71 | V71L | Gta | Tta | 4 | 4 | B.1.118 | 0.026846 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | A | 0.001161 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | AY.119 | 0.000106 |
ORF7a | 71 | V71L | Gta | Cta | 2 | 3 | AY.29 | 0.000032 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 3 | AY.29 | 0.000016 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | AY.68 | 0.000821 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | B | 0.000383 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | B.1.1.50 | 0.002037 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | B.1.36.38 | 0.004926 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | P.1.10 | 0.000808 |
ORF7a | 71 | V71L | Gta | Tta | 3 | 3 | P.1.14 | 0.000143 |
ORF7a | 71 | V71L | GtA | CtT | 1 | 2 | 0.055556 | |
ORF7a | 71 | V71L | Gta | Cta | 1 | 2 | 0.055556 | |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.113 | 0.000285 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.7.1 | 0.000225 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.1.277 | 0.001517 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.1.311 | 0.000716 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.258.12 | 0.015748 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.351 | 0.000059 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.36.29 | 0.001035 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.422 | 0.001625 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 2 | B.1.429 | 0.000024 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 2 | B.1.429 | 0.000024 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 71 | V71L | Gta | Tta | 2 | 2 | C.37 | 0.000232 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.21 | 0.001898 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | AZ.5 | 0.003509 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.177.33 | 0.001645 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.319 | 0.003049 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7a | 71 | V71L | Gta | Cta | 1 | 1 | B.1.399 | 0.001934 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.574 | 0.002151 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | B.55 | 0.00295 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF7a | 71 | V71L | Gta | Tta | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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