CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 71 | V71I | nonsyn | Gta | Ata | 55663 | 55662 | 0.999982 | 27604-27606 | |
ORF7a | 71 | V71I | nonsyn | GtA | AtT | 55663 | 1 | 0.0000179653 | 27604-27606 |
Details of the mutation V71I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 71 | V71I | Gta | Ata | 55662 | 55663 | All | 0.010646 |
ORF7a | 71 | V71I | GtA | AtT | 1 | 55663 | All | 0 |
ORF7a | 71 | V71I | Gta | Ata | 24210 | 24210 | AY.39.1 | 0.95904 |
ORF7a | 71 | V71I | Gta | Ata | 23211 | 23211 | AY.39 | 0.573578 |
ORF7a | 71 | V71I | Gta | Ata | 4495 | 4495 | B.1.617.2 | 0.016926 |
ORF7a | 71 | V71I | Gta | Ata | 1317 | 1317 | AY.39.1.1 | 0.954348 |
ORF7a | 71 | V71I | Gta | Ata | 602 | 602 | AY.39.2 | 0.927581 |
ORF7a | 71 | V71I | Gta | Ata | 275 | 275 | AY.5.2 | 0.67734 |
ORF7a | 71 | V71I | Gta | Ata | 170 | 171 | B.1.1.7 | 0.000152 |
ORF7a | 71 | V71I | GtA | AtT | 1 | 171 | B.1.1.7 | 0.000001 |
ORF7a | 71 | V71I | Gta | Ata | 139 | 139 | AY.4 | 0.000216 |
ORF7a | 71 | V71I | Gta | Ata | 88 | 88 | AY.16 | 0.033409 |
ORF7a | 71 | V71I | Gta | Ata | 78 | 78 | AY.25 | 0.000469 |
ORF7a | 71 | V71I | Gta | Ata | 74 | 74 | AY.103 | 0.000459 |
ORF7a | 71 | V71I | Gta | Ata | 72 | 72 | AY.43 | 0.000319 |
ORF7a | 71 | V71I | Gta | Ata | 61 | 61 | AY.98 | 0.004819 |
ORF7a | 71 | V71I | Gta | Ata | 55 | 55 | B.1.36.18 | 0.023109 |
ORF7a | 71 | V71I | Gta | Ata | 49 | 49 | AY.44 | 0.000298 |
ORF7a | 71 | V71I | Gta | Ata | 37 | 37 | AY.47 | 0.001151 |
ORF7a | 71 | V71I | Gta | Ata | 31 | 31 | B.1.2 | 0.000273 |
ORF7a | 71 | V71I | Gta | Ata | 30 | 30 | AY.29 | 0.000473 |
ORF7a | 71 | V71I | Gta | Ata | 29 | 29 | AY.99.2 | 0.002673 |
ORF7a | 71 | V71I | Gta | Ata | 28 | 28 | P.1 | 0.000441 |
ORF7a | 71 | V71I | Gta | Ata | 28 | 28 | P.1.1 | 0.008895 |
ORF7a | 71 | V71I | Gta | Ata | 27 | 27 | AY.3 | 0.000269 |
ORF7a | 71 | V71I | Gta | Ata | 23 | 23 | AY.117 | 0.001944 |
ORF7a | 71 | V71I | Gta | Ata | 21 | 21 | AY.108 | 0.023153 |
ORF7a | 71 | V71I | Gta | Ata | 21 | 21 | AY.114 | 0.004853 |
ORF7a | 71 | V71I | Gta | Ata | 18 | 18 | AY.20 | 0.0007 |
ORF7a | 71 | V71I | Gta | Ata | 17 | 17 | AY.5 | 0.000351 |
ORF7a | 71 | V71I | Gta | Ata | 16 | 16 | AY.23 | 0.001116 |
ORF7a | 71 | V71I | Gta | Ata | 16 | 16 | B.1.177.85 | 0.086957 |
ORF7a | 71 | V71I | Gta | Ata | 15 | 15 | AY.75 | 0.00084 |
ORF7a | 71 | V71I | Gta | Ata | 14 | 14 | AY.102 | 0.000371 |
ORF7a | 71 | V71I | Gta | Ata | 14 | 14 | AY.110 | 0.001578 |
ORF7a | 71 | V71I | Gta | Ata | 14 | 14 | AY.118 | 0.000877 |
ORF7a | 71 | V71I | Gta | Ata | 13 | 13 | B.1.1.301 | 0.01533 |
ORF7a | 71 | V71I | Gta | Ata | 12 | 12 | AY.4.5 | 0.00129 |
ORF7a | 71 | V71I | Gta | Ata | 12 | 12 | B.1.36 | 0.001751 |
ORF7a | 71 | V71I | Gta | Ata | 12 | 12 | B.1.429 | 0.000282 |
ORF7a | 71 | V71I | Gta | Ata | 12 | 12 | B.1.526 | 0.000282 |
ORF7a | 71 | V71I | Gta | Ata | 11 | 11 | AY.119 | 0.000388 |
ORF7a | 71 | V71I | Gta | Ata | 11 | 11 | AY.26 | 0.000311 |
ORF7a | 71 | V71I | Gta | Ata | 11 | 11 | AY.36 | 0.00163 |
ORF7a | 71 | V71I | Gta | Ata | 11 | 11 | AY.4.2 | 0.000239 |
ORF7a | 71 | V71I | Gta | Ata | 10 | 10 | AY.46 | 0.001041 |
ORF7a | 71 | V71I | Gta | Ata | 10 | 10 | AY.92 | 0.002873 |
ORF7a | 71 | V71I | Gta | Ata | 9 | 9 | AY.33 | 0.000601 |
ORF7a | 71 | V71I | Gta | Ata | 9 | 9 | AY.5.3 | 0.003036 |
ORF7a | 71 | V71I | Gta | Ata | 8 | 8 | B.1 | 0.000073 |
ORF7a | 71 | V71I | Gta | Ata | 7 | 7 | AY.42 | 0.000282 |
ORF7a | 71 | V71I | Gta | Ata | 7 | 7 | B.1.621 | 0.00062 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.113 | 0.000854 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.116 | 0.001721 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.120 | 0.000223 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.30 | 0.002374 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.45 | 0.00073 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.87 | 0.004996 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.9.2 | 0.00022 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | AY.91 | 0.004383 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | B.1.160 | 0.000187 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | B.1.177 | 0.000079 |
ORF7a | 71 | V71I | Gta | Ata | 6 | 6 | B.1.258 | 0.000399 |
ORF7a | 71 | V71I | Gta | Ata | 5 | 5 | AY.13 | 0.000805 |
ORF7a | 71 | V71I | Gta | Ata | 5 | 5 | AY.46.6 | 0.000361 |
ORF7a | 71 | V71I | Gta | Ata | 4 | 4 | AY.100 | 0.000184 |
ORF7a | 71 | V71I | Gta | Ata | 4 | 4 | AY.101 | 0.001962 |
ORF7a | 71 | V71I | Gta | Ata | 4 | 4 | AY.3.1 | 0.000341 |
ORF7a | 71 | V71I | Gta | Ata | 4 | 4 | AY.65 | 0.002132 |
ORF7a | 71 | V71I | Gta | Ata | 4 | 4 | B.1.575 | 0.001214 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | AY.111 | 0.000549 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | AY.121 | 0.000406 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | AY.14 | 0.000264 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | AY.46.2 | 0.001906 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | B.1.1.39 | 0.001529 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 71 | V71I | Gta | Ata | 3 | 3 | P.1.15 | 0.000697 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | A.1 | 0.000564 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.105 | 0.001286 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.106 | 0.00067 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.71 | 0.00095 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.80 | 0.002257 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.93 | 0.000546 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.95 | 0.001522 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | B.1.221 | 0.000142 |
ORF7a | 71 | V71I | Gta | Ata | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AW.1 | 0.003049 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.29.1 | 0.000221 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.4.1 | 0.000737 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.48 | 0.000465 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.64 | 0.000595 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.90 | 0.000684 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.96 | 0.002075 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.113 | 0.006993 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.389 | 0.006061 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.416 | 0.000905 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.177.19 | 0.001431 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.227 | 0.047619 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.340 | 0.004292 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.351.5 | 0.0006 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.408 | 0.00369 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.426 | 0.001009 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.453 | 0.003236 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.530 | 0.007143 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.540 | 0.009709 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | D.2 | 0.000075 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | N.4 | 0.004255 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | N.5 | 0.001767 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 71 | V71I | Gta | Ata | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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