CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 29 | V29L | nonsyn | Gta | Tta | 2870 | 2829 | 0.985714 | 27478-27480 | |
ORF7a | 29 | V29L | nonsyn | Gta | Cta | 2870 | 40 | 0.0139373 | 27478-27480 | |
ORF7a | 29 | V29L | nonsyn | GtA | CtG | 2870 | 1 | 0.000348432 | 27478-27480 |
Details of the mutation V29L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 29 | V29L | Gta | Tta | 2829 | 2870 | All | 0.000541 |
ORF7a | 29 | V29L | Gta | Cta | 40 | 2870 | All | 0.000008 |
ORF7a | 29 | V29L | GtA | CtG | 1 | 2870 | All | 0 |
ORF7a | 29 | V29L | Gta | Tta | 364 | 365 | AY.4 | 0.000567 |
ORF7a | 29 | V29L | Gta | Cta | 1 | 365 | AY.4 | 0.000002 |
ORF7a | 29 | V29L | Gta | Tta | 345 | 357 | B.1.1.7 | 0.000309 |
ORF7a | 29 | V29L | Gta | Cta | 12 | 357 | B.1.1.7 | 0.000011 |
ORF7a | 29 | V29L | Gta | Tta | 286 | 290 | B.1.617.2 | 0.001077 |
ORF7a | 29 | V29L | Gta | Cta | 4 | 290 | B.1.617.2 | 0.000015 |
ORF7a | 29 | V29L | Gta | Tta | 272 | 276 | AY.43 | 0.001205 |
ORF7a | 29 | V29L | Gta | Cta | 4 | 276 | AY.43 | 0.000018 |
ORF7a | 29 | V29L | Gta | Tta | 210 | 217 | AY.25 | 0.001263 |
ORF7a | 29 | V29L | Gta | Cta | 7 | 217 | AY.25 | 0.000042 |
ORF7a | 29 | V29L | Gta | Tta | 121 | 122 | AY.103 | 0.000751 |
ORF7a | 29 | V29L | Gta | Cta | 1 | 122 | AY.103 | 0.000006 |
ORF7a | 29 | V29L | Gta | Tta | 74 | 74 | C.14 | 0.320346 |
ORF7a | 29 | V29L | Gta | Tta | 73 | 73 | B.1.619.1 | 0.046825 |
ORF7a | 29 | V29L | Gta | Tta | 70 | 70 | AY.121 | 0.009472 |
ORF7a | 29 | V29L | Gta | Tta | 67 | 67 | B.1.429 | 0.001576 |
ORF7a | 29 | V29L | Gta | Tta | 50 | 50 | B.1.480 | 0.124378 |
ORF7a | 29 | V29L | Gta | Tta | 47 | 47 | AY.106 | 0.01574 |
ORF7a | 29 | V29L | Gta | Tta | 43 | 45 | B.1.2 | 0.000379 |
ORF7a | 29 | V29L | Gta | Cta | 2 | 45 | B.1.2 | 0.000018 |
ORF7a | 29 | V29L | Gta | Tta | 36 | 36 | B.1 | 0.00033 |
ORF7a | 29 | V29L | Gta | Tta | 31 | 33 | P.1 | 0.000488 |
ORF7a | 29 | V29L | Gta | Cta | 2 | 33 | P.1 | 0.000032 |
ORF7a | 29 | V29L | Gta | Tta | 27 | 27 | AY.29 | 0.000426 |
ORF7a | 29 | V29L | Gta | Tta | 22 | 22 | AY.98.1 | 0.001065 |
ORF7a | 29 | V29L | Gta | Tta | 20 | 20 | AK.2 | 0.909091 |
ORF7a | 29 | V29L | Gta | Tta | 20 | 20 | AY.42 | 0.000805 |
ORF7a | 29 | V29L | Gta | Tta | 20 | 20 | B.1.177 | 0.000263 |
ORF7a | 29 | V29L | Gta | Tta | 19 | 19 | AY.3 | 0.000189 |
ORF7a | 29 | V29L | Gta | Tta | 19 | 19 | AY.44 | 0.000116 |
ORF7a | 29 | V29L | Gta | Tta | 19 | 19 | C.37 | 0.002205 |
ORF7a | 29 | V29L | Gta | Tta | 16 | 16 | AY.75 | 0.000896 |
ORF7a | 29 | V29L | Gta | Tta | 16 | 16 | B.1.1 | 0.00029 |
ORF7a | 29 | V29L | Gta | Tta | 16 | 16 | B.1.351.5 | 0.009592 |
ORF7a | 29 | V29L | Gta | Tta | 15 | 15 | AY.39 | 0.000371 |
ORF7a | 29 | V29L | Gta | Tta | 14 | 14 | AY.110 | 0.001578 |
ORF7a | 29 | V29L | Gta | Tta | 14 | 14 | B.1.438.1 | 0.001502 |
ORF7a | 29 | V29L | Gta | Tta | 13 | 13 | AY.100 | 0.000598 |
ORF7a | 29 | V29L | Gta | Tta | 13 | 13 | AY.33 | 0.000868 |
ORF7a | 29 | V29L | Gta | Tta | 13 | 13 | B.1.1.159 | 0.060748 |
ORF7a | 29 | V29L | Gta | Tta | 13 | 13 | B.1.177.16 | 0.008638 |
ORF7a | 29 | V29L | Gta | Tta | 10 | 12 | AY.102 | 0.000265 |
ORF7a | 29 | V29L | Gta | Cta | 2 | 12 | AY.102 | 0.000053 |
ORF7a | 29 | V29L | Gta | Tta | 12 | 12 | B.1.351 | 0.000357 |
ORF7a | 29 | V29L | Gta | Tta | 11 | 11 | AY.20 | 0.000428 |
ORF7a | 29 | V29L | Gta | Tta | 11 | 11 | B.1.3 | 0.028796 |
ORF7a | 29 | V29L | Gta | Tta | 10 | 11 | B.1.526 | 0.000235 |
ORF7a | 29 | V29L | Gta | Cta | 1 | 11 | B.1.526 | 0.000024 |
ORF7a | 29 | V29L | Gta | Tta | 9 | 9 | AY.46 | 0.000937 |
ORF7a | 29 | V29L | Gta | Tta | 9 | 9 | B.1.621 | 0.000797 |
ORF7a | 29 | V29L | Gta | Tta | 8 | 8 | AY.5 | 0.000165 |
ORF7a | 29 | V29L | Gta | Tta | 8 | 8 | AY.9 | 0.000541 |
ORF7a | 29 | V29L | Gta | Tta | 8 | 8 | R.1 | 0.00072 |
ORF7a | 29 | V29L | Gta | Tta | 7 | 7 | AY.113 | 0.000997 |
ORF7a | 29 | V29L | Gta | Tta | 6 | 7 | AY.7 | 0.001176 |
ORF7a | 29 | V29L | Gta | Cta | 1 | 7 | AY.7 | 0.000196 |
ORF7a | 29 | V29L | Gta | Tta | 7 | 7 | B.1.160 | 0.000218 |
ORF7a | 29 | V29L | Gta | Tta | 6 | 6 | AY.117 | 0.000507 |
ORF7a | 29 | V29L | Gta | Tta | 6 | 6 | AY.23 | 0.000418 |
ORF7a | 29 | V29L | Gta | Tta | 6 | 6 | AY.26 | 0.00017 |
ORF7a | 29 | V29L | Gta | Tta | 6 | 6 | AY.4.2 | 0.00013 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 6 | AY.5.3 | 0.001687 |
ORF7a | 29 | V29L | GtA | CtG | 1 | 6 | AY.5.3 | 0.000337 |
ORF7a | 29 | V29L | Gta | Tta | 6 | 6 | AY.64 | 0.003571 |
ORF7a | 29 | V29L | Gta | Tta | 6 | 6 | B.1.221 | 0.000426 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | AY.105 | 0.003215 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | AY.38 | 0.002496 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 5 | AY.39.1 | 0.000158 |
ORF7a | 29 | V29L | Gta | Cta | 1 | 5 | AY.39.1 | 0.00004 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | AY.6 | 0.000206 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | AY.9.1 | 0.000419 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | B.1.1.1 | 0.001633 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | B.1.243 | 0.000348 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | B.1.36.18 | 0.002101 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | P.1.14 | 0.000239 |
ORF7a | 29 | V29L | Gta | Tta | 5 | 5 | P.2 | 0.000933 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | A | 0.001548 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | AY.19 | 0.004561 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | AY.47 | 0.000124 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | AY.71 | 0.0019 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | B.1.1.153 | 0.004381 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | B.1.1.302 | 0.008299 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | B.1.177.48 | 0.0125 |
ORF7a | 29 | V29L | Gta | Tta | 4 | 4 | B.1.427 | 0.000202 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | AY.114 | 0.000693 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | AY.16 | 0.001139 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | AY.3.1 | 0.000256 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | AY.34.1 | 0.00153 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 3 | AY.46.5 | 0.000397 |
ORF7a | 29 | V29L | Gta | Cta | 1 | 3 | AY.46.5 | 0.000198 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | AY.54 | 0.000286 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | AY.61 | 0.000314 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.1.222 | 0.000612 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.1.294 | 0.003797 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.1.397 | 0.006757 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.1.516 | 0.2 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.240 | 0.000647 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.258 | 0.0002 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.36 | 0.000438 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.36.21 | 0.006479 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.375 | 0.002459 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | P.1.1 | 0.000953 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | P.1.13 | 0.002695 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | P.1.15 | 0.000697 |
ORF7a | 29 | V29L | Gta | Tta | 3 | 3 | P.1.17 | 0.000485 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AB.1 | 0.016393 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.101 | 0.000981 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.12 | 0.000632 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.27 | 0.000129 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.59 | 0.001059 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.8 | 0.001212 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.91 | 0.001461 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | AY.99.2 | 0.000184 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.1.28 | 0.000622 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.1.311 | 0.000716 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.1.58 | 0.010753 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.160.26 | 0.004843 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.177.56 | 0.001335 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.177.80 | 0.003824 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.36.8 | 0.002 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.524 | 0.002813 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.586 | 0.021978 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | B.40 | 0.000729 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | C.4 | 0.02 |
ORF7a | 29 | V29L | Gta | Tta | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | A.1 | 0.000282 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | A.23 | 0.010526 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | A.29 | 0.005319 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.83 | 0.001724 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B | 0.000128 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.404 | 0.015873 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.419 | 0.007407 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.110 | 0.004525 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.160.8 | 0.001289 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.177.10 | 0.000878 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.177.41 | 0.0025 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.177.46 | 0.000918 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.177.6 | 0.000977 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7a | 29 | V29L | Gta | Cta | 1 | 1 | B.1.219 | 0.009434 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.220 | 0.01087 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.258.16 | 0.001637 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.258.24 | 0.010753 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.279 | 0.000514 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.298 | 0.002114 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.36.38 | 0.001642 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.425 | 0.002994 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.456 | 0.003268 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.499 | 0.00105 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.507 | 0.011236 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.625 | 0.002353 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.1.9.4 | 0.006135 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | B.6 | 0.00091 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | C.36 | 0.000911 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | L.3 | 0.003546 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 29 | V29L | Gta | Tta | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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