CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 104 | V104F | nonsyn | Gtt | Ttt | 3757 | 3756 | 0.999734 | 27703-27705 | |
ORF7a | 104 | V104F | nonsyn | GtT | TtC | 3757 | 1 | 0.00026617 | 27703-27705 |
Details of the mutation V104F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 104 | V104F | Gtt | Ttt | 3756 | 3757 | All | 0.000718 |
ORF7a | 104 | V104F | GtT | TtC | 1 | 3757 | All | 0 |
ORF7a | 104 | V104F | Gtt | Ttt | 773 | 774 | B.1.1.7 | 0.000692 |
ORF7a | 104 | V104F | GtT | TtC | 1 | 774 | B.1.1.7 | 0.000001 |
ORF7a | 104 | V104F | Gtt | Ttt | 248 | 248 | AY.4 | 0.000386 |
ORF7a | 104 | V104F | Gtt | Ttt | 214 | 214 | B.1.429 | 0.005035 |
ORF7a | 104 | V104F | Gtt | Ttt | 164 | 164 | B.1.617.2 | 0.000618 |
ORF7a | 104 | V104F | Gtt | Ttt | 163 | 163 | B.1 | 0.001493 |
ORF7a | 104 | V104F | Gtt | Ttt | 160 | 160 | AY.43 | 0.000709 |
ORF7a | 104 | V104F | Gtt | Ttt | 144 | 144 | B.1.243 | 0.01002 |
ORF7a | 104 | V104F | Gtt | Ttt | 136 | 136 | AY.27 | 0.008802 |
ORF7a | 104 | V104F | Gtt | Ttt | 101 | 101 | AY.3.1 | 0.008611 |
ORF7a | 104 | V104F | Gtt | Ttt | 100 | 100 | AY.26 | 0.002831 |
ORF7a | 104 | V104F | Gtt | Ttt | 99 | 99 | AY.44 | 0.000603 |
ORF7a | 104 | V104F | Gtt | Ttt | 88 | 88 | B.1.503 | 0.218905 |
ORF7a | 104 | V104F | Gtt | Ttt | 71 | 71 | AY.103 | 0.000441 |
ORF7a | 104 | V104F | Gtt | Ttt | 69 | 69 | AY.102 | 0.001829 |
ORF7a | 104 | V104F | Gtt | Ttt | 63 | 63 | AY.7.2 | 0.035235 |
ORF7a | 104 | V104F | Gtt | Ttt | 52 | 52 | AY.85 | 0.022213 |
ORF7a | 104 | V104F | Gtt | Ttt | 49 | 49 | B.1.2 | 0.000431 |
ORF7a | 104 | V104F | Gtt | Ttt | 49 | 49 | P.1 | 0.000772 |
ORF7a | 104 | V104F | Gtt | Ttt | 45 | 45 | B.1.1 | 0.000816 |
ORF7a | 104 | V104F | Gtt | Ttt | 42 | 42 | B.1.177 | 0.000553 |
ORF7a | 104 | V104F | Gtt | Ttt | 42 | 42 | B.1.497 | 0.01322 |
ORF7a | 104 | V104F | Gtt | Ttt | 41 | 41 | B.1.1.306 | 0.017975 |
ORF7a | 104 | V104F | Gtt | Ttt | 41 | 41 | B.1.160 | 0.001279 |
ORF7a | 104 | V104F | Gtt | Ttt | 39 | 39 | AY.6 | 0.001604 |
ORF7a | 104 | V104F | Gtt | Ttt | 36 | 36 | B.1.221 | 0.002557 |
ORF7a | 104 | V104F | Gtt | Ttt | 33 | 33 | AY.25 | 0.000198 |
ORF7a | 104 | V104F | Gtt | Ttt | 32 | 32 | AE.8 | 0.015648 |
ORF7a | 104 | V104F | Gtt | Ttt | 32 | 32 | AY.5 | 0.000661 |
ORF7a | 104 | V104F | Gtt | Ttt | 31 | 31 | B.1.621.1 | 0.01568 |
ORF7a | 104 | V104F | Gtt | Ttt | 25 | 25 | B.1.427 | 0.001262 |
ORF7a | 104 | V104F | Gtt | Ttt | 23 | 23 | AY.29 | 0.000363 |
ORF7a | 104 | V104F | Gtt | Ttt | 22 | 22 | B.1.1.181 | 0.1 |
ORF7a | 104 | V104F | Gtt | Ttt | 18 | 18 | AY.20 | 0.0007 |
ORF7a | 104 | V104F | Gtt | Ttt | 17 | 17 | AY.121 | 0.0023 |
ORF7a | 104 | V104F | Gtt | Ttt | 16 | 16 | AY.47 | 0.000498 |
ORF7a | 104 | V104F | Gtt | Ttt | 16 | 16 | AY.98.1 | 0.000775 |
ORF7a | 104 | V104F | Gtt | Ttt | 16 | 16 | B.1.258 | 0.001065 |
ORF7a | 104 | V104F | Gtt | Ttt | 15 | 15 | AY.86 | 0.012448 |
ORF7a | 104 | V104F | Gtt | Ttt | 12 | 12 | AY.75 | 0.000672 |
ORF7a | 104 | V104F | Gtt | Ttt | 12 | 12 | B | 0.001534 |
ORF7a | 104 | V104F | Gtt | Ttt | 10 | 10 | AY.119 | 0.000353 |
ORF7a | 104 | V104F | Gtt | Ttt | 10 | 10 | B.1.517 | 0.00427 |
ORF7a | 104 | V104F | Gtt | Ttt | 9 | 9 | B.1.1.214 | 0.000499 |
ORF7a | 104 | V104F | Gtt | Ttt | 9 | 9 | B.1.218 | 0.046392 |
ORF7a | 104 | V104F | Gtt | Ttt | 8 | 8 | B.1.1.294 | 0.010127 |
ORF7a | 104 | V104F | Gtt | Ttt | 8 | 8 | B.1.596 | 0.000697 |
ORF7a | 104 | V104F | Gtt | Ttt | 7 | 7 | AY.39 | 0.000173 |
ORF7a | 104 | V104F | Gtt | Ttt | 7 | 7 | AY.4.2 | 0.000152 |
ORF7a | 104 | V104F | Gtt | Ttt | 7 | 7 | AY.61 | 0.000733 |
ORF7a | 104 | V104F | Gtt | Ttt | 7 | 7 | AY.9.2 | 0.000257 |
ORF7a | 104 | V104F | Gtt | Ttt | 7 | 7 | AY.98 | 0.000553 |
ORF7a | 104 | V104F | Gtt | Ttt | 7 | 7 | B.1.395 | 0.049296 |
ORF7a | 104 | V104F | Gtt | Ttt | 6 | 6 | AY.3 | 0.00006 |
ORF7a | 104 | V104F | Gtt | Ttt | 6 | 6 | B.1.1.33 | 0.002525 |
ORF7a | 104 | V104F | Gtt | Ttt | 6 | 6 | B.1.351 | 0.000178 |
ORF7a | 104 | V104F | Gtt | Ttt | 6 | 6 | B.1.36.8 | 0.006 |
ORF7a | 104 | V104F | Gtt | Ttt | 6 | 6 | B.1.582 | 0.002944 |
ORF7a | 104 | V104F | Gtt | Ttt | 6 | 6 | Q.4 | 0.002729 |
ORF7a | 104 | V104F | Gtt | Ttt | 5 | 5 | AY.54 | 0.000477 |
ORF7a | 104 | V104F | Gtt | Ttt | 5 | 5 | AY.67 | 0.002321 |
ORF7a | 104 | V104F | Gtt | Ttt | 5 | 5 | AY.84 | 0.002187 |
ORF7a | 104 | V104F | Gtt | Ttt | 5 | 5 | AY.9 | 0.000338 |
ORF7a | 104 | V104F | Gtt | Ttt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF7a | 104 | V104F | Gtt | Ttt | 5 | 5 | B.1.621 | 0.000443 |
ORF7a | 104 | V104F | Gtt | Ttt | 5 | 5 | C.37 | 0.00058 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | AY.117 | 0.000338 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | AY.38 | 0.001997 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | AY.46 | 0.000416 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | B.1.1.291 | 0.00297 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | B.1.258.3 | 0.0067 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | B.1.36 | 0.000584 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | B.1.36.1 | 0.004561 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | B.1.36.29 | 0.002069 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | P.1.15 | 0.000929 |
ORF7a | 104 | V104F | Gtt | Ttt | 4 | 4 | P.1.17 | 0.000647 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | A | 0.001161 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.101 | 0.001471 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.116 | 0.00086 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.12 | 0.000948 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.13 | 0.000483 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.39.1 | 0.000119 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.42 | 0.000121 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.92 | 0.000862 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | AY.99.2 | 0.000276 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.111 | 0.003525 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.221.1 | 0.008721 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.36.38 | 0.004926 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.391 | 0.003382 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.551 | 0.003871 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.605 | 0.017857 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.619 | 0.002613 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.1.628 | 0.001057 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | B.10 | 0.024793 |
ORF7a | 104 | V104F | Gtt | Ttt | 3 | 3 | P.2 | 0.00056 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.24 | 0.000862 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.34.1 | 0.00102 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.46.6 | 0.000144 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.55 | 0.001835 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.58 | 0.001815 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.74 | 0.000231 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | AY.99.1 | 0.003106 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.1.133 | 0.016949 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.1.305 | 0.007722 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.1.354 | 0.008772 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.177.54 | 0.001213 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.195 | 0.01005 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.366 | 0.009756 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.526 | 0.000047 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.577 | 0.001375 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.1.9.5 | 0.011364 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | B.40 | 0.000729 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 104 | V104F | Gtt | Ttt | 2 | 2 | R.1 | 0.00018 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | 0.055556 | |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | A.12 | 0.166667 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | A.28 | 0.002646 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AU.1 | 0.001266 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.10 | 0.00053 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.2 | 0.000356 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.51 | 0.000909 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.64 | 0.000595 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.335 | 0.012987 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.466 | 0.008696 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.1.518 | 0.006329 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.177.24 | 0.001295 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.235 | 0.002519 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.239 | 0.001221 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.241 | 0.000812 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.309 | 0.047619 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.538 | 0.008065 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.565 | 0.00081 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.602 | 0.006536 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.612 | 0.002653 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | B.1.83 | 0.015385 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | C.35 | 0.000774 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 104 | V104F | Gtt | Ttt | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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