CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = T61del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a61T61del2delaCTa--95550.57894727574-27576
ORF7a61T61del2delACt--t95390.41052627574-27576
ORF7a61T61del2delACT--G9510.010526327574-27576

Details of the mutation T61del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a61T61del2aCTa--5595All0.000011
ORF7a61T61del2ACt--t3995All0.000007
ORF7a61T61del2ACT--G195All0
ORF7a61T61del2aCTa--1732AY.250.000102
ORF7a61T61del2ACt--t1532AY.250.00009
ORF7a61T61del2aCTa--1112AY.1030.000068
ORF7a61T61del2ACt--t112AY.1030.000006
ORF7a61T61del2ACt--t1212AY.420.000483
ORF7a61T61del2aCTa--88B.1.177.150.005047
ORF7a61T61del2aCTa--34AY.40.000005
ORF7a61T61del2ACt--t14AY.40.000002
ORF7a61T61del2aCTa--24B.1.1.70.000002
ORF7a61T61del2ACt--t24B.1.1.70.000002
ORF7a61T61del2aCTa--23AY.390.000049
ORF7a61T61del2ACt--t13AY.390.000025
ORF7a61T61del2aCTa--33B.1.20.000026
ORF7a61T61del2aCTa--22AY.120.000632
ORF7a61T61del2ACt--t12AY.430.000004
ORF7a61T61del2aCTa--12AY.430.000004
ORF7a61T61del2ACt--t11AY.1050.000643
ORF7a61T61del2ACT--G11AY.120.10.000321
ORF7a61T61del2aCTa--11AY.29.10.000221
ORF7a61T61del2ACt--t11AY.30.00001
ORF7a61T61del2aCTa--11AY.440.000006
ORF7a61T61del2ACt--t11B.10.000009
ORF7a61T61del2aCTa--11B.1.10.000018
ORF7a61T61del2aCTa--11B.1.1.700.000341
ORF7a61T61del2aCTa--11B.1.2430.00007
ORF7a61T61del2ACt--t11B.1.4290.000024
ORF7a61T61del2aCTa--11B.1.5260.000024
ORF7a61T61del2ACt--t11B.1.617.20.000004
ORF7a61T61del2ACt--t11C.370.000116