CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = T61del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a61T61del1delacTac-3233000.92879327574-27576
ORF7a61T61del1delAct-ct32390.027863827574-27576
ORF7a61T61del1delACT-NN32360.018575927574-27576
ORF7a61T61del1delACt-At32360.018575927574-27576
ORF7a61T61del1delAcT-cC32310.0030959827574-27576
ORF7a61T61del1delAcT-cN32310.0030959827574-27576

Details of the mutation T61del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a61T61del1acTac-300323All0.000057
ORF7a61T61del1Act-ct9323All0.000002
ORF7a61T61del1ACt-At6323All0.000001
ORF7a61T61del1ACT-NN6323All0.000001
ORF7a61T61del1AcT-cC1323All0
ORF7a61T61del1AcT-cN1323All0
ORF7a61T61del1acTac-5864AY.250.000349
ORF7a61T61del1ACT-NN364AY.250.000018
ORF7a61T61del1Act-ct364AY.250.000018
ORF7a61T61del1acTac-5555B.1.1.70.000049
ORF7a61T61del1acTac-2226AY.40.000034
ORF7a61T61del1ACt-At326AY.40.000005
ORF7a61T61del1AcT-cN126AY.40.000002
ORF7a61T61del1acTac-2325AY.430.000102
ORF7a61T61del1AcT-cC125AY.430.000004
ORF7a61T61del1ACt-At125AY.430.000004
ORF7a61T61del1acTac-2424AY.1180.001504
ORF7a61T61del1acTac-2121AY.1200.000781
ORF7a61T61del1acTac-2121B.1.617.20.000079
ORF7a61T61del1acTac-1213AY.1030.000075
ORF7a61T61del1Act-ct113AY.1030.000006
ORF7a61T61del1acTac-99AY.440.000055
ORF7a61T61del1acTac-46AY.470.000124
ORF7a61T61del1Act-ct26AY.470.000062
ORF7a61T61del1acTac-44B.1.1600.000125
ORF7a61T61del1acTac-33AY.4.20.000065
ORF7a61T61del1acTac-33B.1.10.000054
ORF7a61T61del1acTac-33Q.40.001364
ORF7a61T61del1acTac-22AY.116.10.000623
ORF7a61T61del1acTac-22AY.30.00002
ORF7a61T61del1acTac-22AY.34.10.00102
ORF7a61T61del1acTac-22AY.390.000049
ORF7a61T61del1acTac-12AY.50.000021
ORF7a61T61del1Act-ct12AY.50.000021
ORF7a61T61del1acTac-22AY.710.00095
ORF7a61T61del1acTac-22B.1.20.000018
ORF7a61T61del1acTac-12B.1.3510.00003
ORF7a61T61del1ACT-NN12B.1.3510.00003
ORF7a61T61del1acTac-22B.1.36.20.021505
ORF7a61T61del1acTac-12B.1.4290.000024
ORF7a61T61del1ACT-NN12B.1.4290.000024
ORF7a61T61del1acTac-11AY.1000.000046
ORF7a61T61del1acTac-11AY.1190.000035
ORF7a61T61del1acTac-11AY.120.20.001285
ORF7a61T61del1acTac-11AY.360.000148
ORF7a61T61del1acTac-11AY.39.10.00004
ORF7a61T61del1acTac-11AY.4.50.000107
ORF7a61T61del1acTac-11AY.5.20.002463
ORF7a61T61del1ACt-At11AY.5.40.000277
ORF7a61T61del1acTac-11AY.540.000095
ORF7a61T61del1Act-ct11AY.570.000656
ORF7a61T61del1acTac-11AY.80.000606
ORF7a61T61del1Act-ct11AY.820.001357
ORF7a61T61del1acTac-11AY.980.000079
ORF7a61T61del1ACT-NN11B.10.000009
ORF7a61T61del1ACt-At11B.1.1.2140.000055
ORF7a61T61del1acTac-11B.1.1.2530.002506
ORF7a61T61del1acTac-11B.1.1.2840.000107
ORF7a61T61del1acTac-11B.1.1.4320.001266
ORF7a61T61del1acTac-11B.1.1770.000013
ORF7a61T61del1acTac-11B.1.617.10.000129
ORF7a61T61del1acTac-11B.1.88.10.004808
ORF7a61T61del1acTac-11B.400.000364
ORF7a61T61del1acTac-11C.370.000116
ORF7a61T61del1acTac-11N.50.001767
ORF7a61T61del1acTac-11P.10.000016
ORF7a61T61del1acTac-11P.1.150.000232