CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = T61S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a61T61SnonsynActTct110580.52727327574-27576
ORF7a61T61SnonsynaCtaGt110390.35454527574-27576
ORF7a61T61SnonsynAcTTcA11050.045454527574-27576
ORF7a61T61SnonsynaCTaGC11040.036363627574-27576
ORF7a61T61SnonsynAcTTcC11040.036363627574-27576

Details of the mutation T61S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a61T61SActTct58110All0.000011
ORF7a61T61SaCtaGt39110All0.000007
ORF7a61T61SAcTTcA5110All0.000001
ORF7a61T61SAcTTcC4110All0.000001
ORF7a61T61SaCTaGC4110All0.000001
ORF7a61T61SActTct2326B.1.1.70.000021
ORF7a61T61SaCtaGt326B.1.1.70.000003
ORF7a61T61SActTct1220AY.250.000072
ORF7a61T61SaCtaGt420AY.250.000024
ORF7a61T61SaCTaGC220AY.250.000012
ORF7a61T61SAcTTcC120AY.250.000006
ORF7a61T61SAcTTcA120AY.250.000006
ORF7a61T61SaCtaGt49B.1.617.20.000015
ORF7a61T61SActTct39B.1.617.20.000011
ORF7a61T61SAcTTcC19B.1.617.20.000004
ORF7a61T61SaCTaGC19B.1.617.20.000004
ORF7a61T61SaCtaGt67AY.430.000027
ORF7a61T61SAcTTcC17AY.430.000004
ORF7a61T61SActTct26B.1.3510.000059
ORF7a61T61SAcTTcA26B.1.3510.000059
ORF7a61T61SAcTTcC16B.1.3510.00003
ORF7a61T61SaCtaGt16B.1.3510.00003
ORF7a61T61SActTct55AY.1170.000423
ORF7a61T61SActTct24AY.40.000003
ORF7a61T61SaCtaGt24AY.40.000003
ORF7a61T61SActTct34B.1.10.000054
ORF7a61T61SaCtaGt14B.1.10.000018
ORF7a61T61SaCtaGt33AY.240.001293
ORF7a61T61SaCtaGt22AY.1000.000092
ORF7a61T61SActTct12AY.260.000028
ORF7a61T61SAcTTcA12AY.260.000028
ORF7a61T61SaCtaGt22B.10.000018
ORF7a61T61SaCtaGt12B.1.177.210.000076
ORF7a61T61SAcTTcA12B.1.177.210.000076
ORF7a61T61SActTct12B.1.20.000009
ORF7a61T61SaCtaGt12B.1.20.000009
ORF7a61T61SaCtaGt22B.1.221.40.008333
ORF7a61T61SaCtaGt11AY.230.00007
ORF7a61T61SActTct11AY.390.000025
ORF7a61T61SActTct11AY.460.000104
ORF7a61T61SActTct11AY.980.000079
ORF7a61T61SActTct11AY.990.001049
ORF7a61T61SActTct11B.1.1.5190.00004
ORF7a61T61SaCtaGt11B.1.1600.000031
ORF7a61T61SaCtaGt11B.1.1770.000013
ORF7a61T61SaCtaGt11B.1.2580.000067
ORF7a61T61SActTct11B.1.4970.000315
ORF7a61T61SaCtaGt11B.1.5260.000024
ORF7a61T61SaCtaGt11D.20.000075
ORF7a61T61SaCtaGt11P.10.000016
ORF7a61T61SaCTaGC11P.1.160.000374

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.