CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = T61A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a61T61AnonsynActGct48470.97916727574-27576
ORF7a61T61AnonsynAcTGcC4810.020833327574-27576

Details of the mutation T61A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a61T61AActGct4748All0.000009
ORF7a61T61AAcTGcC148All0
ORF7a61T61AActGct55B.1.438.10.000536
ORF7a61T61AActGct44B.1.1.70.000004
ORF7a61T61AActGct44B.1.1600.000125
ORF7a61T61AActGct33AY.440.000018
ORF7a61T61AActGct33B.1.10.000054
ORF7a61T61AActGct22AY.260.000057
ORF7a61T61AActGct22B.1.1.1890.003026
ORF7a61T61AActGct22B.1.1770.000026
ORF7a61T61AActGct22B.1.2580.000133
ORF7a61T61AActGct22B.1.36.10.002281
ORF7a61T61AActGct11AY.1030.000006
ORF7a61T61AActGct11AY.200.000039
ORF7a61T61AActGct11AY.250.000006
ORF7a61T61AActGct11AY.40.000002
ORF7a61T61AActGct11AY.410.000294
ORF7a61T61AAcTGcC11AY.430.000004
ORF7a61T61AActGct11AY.60.000041
ORF7a61T61AActGct11AY.70.000196
ORF7a61T61AActGct11B.10.000009
ORF7a61T61AActGct11B.1.1.2820.011628
ORF7a61T61AActGct11B.1.1.3050.003861
ORF7a61T61AActGct11B.1.177.60.000977
ORF7a61T61AActGct11B.1.2420.018868
ORF7a61T61AActGct11B.1.3510.00003
ORF7a61T61AActGct11B.1.360.000146
ORF7a61T61AActGct11B.1.4380.006536
ORF7a61T61AActGct11B.1.4690.00361
ORF7a61T61AActGct11B.1.5250.000113
ORF7a61T61AActGct11B.1.617.10.000129

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.