CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = T14I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	14	T14I		nonsyn	aCt	aTt	16818	16818	1	27433-27435

Details of the mutation T14I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	14	T14I	aCt	aTt	16818	16818	All	0.003217
ORF7a	14	T14I	aCt	aTt	2676	2676	B.1.160	0.083458
ORF7a	14	T14I	aCt	aTt	2111	2111	AY.4	0.003286
ORF7a	14	T14I	aCt	aTt	2077	2077	B.1.1.7	0.001859
ORF7a	14	T14I	aCt	aTt	1274	1274	B.1.409	0.995313
ORF7a	14	T14I	aCt	aTt	1059	1059	B.1.160.16	0.984201
ORF7a	14	T14I	aCt	aTt	662	662	AP.1	0.993994
ORF7a	14	T14I	aCt	aTt	462	462	B.1.36.21	0.99784
ORF7a	14	T14I	aCt	aTt	441	441	B.1.160.14	0.934322
ORF7a	14	T14I	aCt	aTt	345	345	B.1.617.2	0.001299
ORF7a	14	T14I	aCt	aTt	299	299	AY.103	0.001857
ORF7a	14	T14I	aCt	aTt	295	295	B.1.2	0.002598
ORF7a	14	T14I	aCt	aTt	278	278	AM.4	0.992857
ORF7a	14	T14I	aCt	aTt	258	258	AY.44	0.00157
ORF7a	14	T14I	aCt	aTt	193	193	B.1	0.001768
ORF7a	14	T14I	aCt	aTt	193	193	B.1.160.15	0.955446
ORF7a	14	T14I	aCt	aTt	176	176	AY.3	0.001751
ORF7a	14	T14I	aCt	aTt	172	172	AY.43	0.000762
ORF7a	14	T14I	aCt	aTt	169	169	AY.74	0.019544
ORF7a	14	T14I	aCt	aTt	168	168	B.1.160.11	0.96
ORF7a	14	T14I	aCt	aTt	163	163	B.1.626	0.931429
ORF7a	14	T14I	aCt	aTt	162	162	B.1.177	0.002133
ORF7a	14	T14I	aCt	aTt	155	155	B.1.160.12	0.99359
ORF7a	14	T14I	aCt	aTt	142	142	AY.4.5	0.015264
ORF7a	14	T14I	aCt	aTt	132	132	B.1.429	0.003106
ORF7a	14	T14I	aCt	aTt	130	130	B.1.36.18	0.054622
ORF7a	14	T14I	aCt	aTt	115	115	AB.1	0.942623
ORF7a	14	T14I	aCt	aTt	102	102	AY.25	0.000614
ORF7a	14	T14I	aCt	aTt	91	91	B.1.258	0.006056
ORF7a	14	T14I	aCt	aTt	90	90	P.1	0.001418
ORF7a	14	T14I	aCt	aTt	89	89	AY.120.2.1	0.044345
ORF7a	14	T14I	aCt	aTt	88	88	B.1.526	0.002068
ORF7a	14	T14I	aCt	aTt	81	81	P.1.7	0.025862
ORF7a	14	T14I	aCt	aTt	70	70	B.1.1	0.00127
ORF7a	14	T14I	aCt	aTt	63	63	B.1.243	0.004384
ORF7a	14	T14I	aCt	aTt	58	58	AY.29	0.000915
ORF7a	14	T14I	aCt	aTt	48	48	AY.102	0.001273
ORF7a	14	T14I	aCt	aTt	46	46	AY.3.1	0.003922
ORF7a	14	T14I	aCt	aTt	44	44	AY.20	0.00171
ORF7a	14	T14I	aCt	aTt	44	44	AY.47	0.001369
ORF7a	14	T14I	aCt	aTt	36	36	B.1.160.13	1
ORF7a	14	T14I	aCt	aTt	35	35	AY.23	0.002441
ORF7a	14	T14I	aCt	aTt	35	35	B.1.221	0.002486
ORF7a	14	T14I	aCt	aTt	35	35	B.1.351	0.00104
ORF7a	14	T14I	aCt	aTt	35	35	B.1.351.2	0.01059
ORF7a	14	T14I	aCt	aTt	34	34	AY.26	0.000963
ORF7a	14	T14I	aCt	aTt	32	32	B.1.177.8	0.024078
ORF7a	14	T14I	aCt	aTt	31	31	AY.39	0.000766
ORF7a	14	T14I	aCt	aTt	29	29	B.1.428.2	0.966667
ORF7a	14	T14I	aCt	aTt	27	27	AY.75	0.001513
ORF7a	14	T14I	aCt	aTt	27	27	B.1.1.519	0.001072
ORF7a	14	T14I	aCt	aTt	26	26	AY.120	0.000967
ORF7a	14	T14I	aCt	aTt	26	26	AY.9.1	0.002177
ORF7a	14	T14I	aCt	aTt	25	25	C.37	0.002902
ORF7a	14	T14I	aCt	aTt	24	24	B.1.577	0.016495
ORF7a	14	T14I	aCt	aTt	24	24	Q.8	0.003958
ORF7a	14	T14I	aCt	aTt	23	23	B.1.177.44	0.011936
ORF7a	14	T14I	aCt	aTt	23	23	B.1.369	0.00656
ORF7a	14	T14I	aCt	aTt	22	22	B.1.1.424	1
ORF7a	14	T14I	aCt	aTt	22	22	B.1.426	0.0222
ORF7a	14	T14I	aCt	aTt	21	21	AY.46.4	0.003455
ORF7a	14	T14I	aCt	aTt	19	19	B.1.258.11	0.007531
ORF7a	14	T14I	aCt	aTt	19	19	B.1.433	0.060703
ORF7a	14	T14I	aCt	aTt	19	19	B.1.466.1	0.136691
ORF7a	14	T14I	aCt	aTt	19	19	B.1.621	0.001682
ORF7a	14	T14I	aCt	aTt	19	19	C.36.3	0.010777
ORF7a	14	T14I	aCt	aTt	18	18	B.1.177.18	0.020882
ORF7a	14	T14I	aCt	aTt	17	17	AY.33	0.001135
ORF7a	14	T14I	aCt	aTt	16	16	AY.54	0.001526
ORF7a	14	T14I	aCt	aTt	16	16	AY.9	0.001082
ORF7a	14	T14I	aCt	aTt	15	15	AY.119	0.00053
ORF7a	14	T14I	aCt	aTt	15	15	AY.4.2	0.000325
ORF7a	14	T14I	aCt	aTt	15	15	AY.5	0.00031
ORF7a	14	T14I	aCt	aTt	15	15	B.1.36	0.002189
ORF7a	14	T14I	aCt	aTt	14	14	AY.100	0.000644
ORF7a	14	T14I	aCt	aTt	14	14	AY.42	0.000563
ORF7a	14	T14I	aCt	aTt	14	14	AY.61	0.001467
ORF7a	14	T14I	aCt	aTt	14	14	B.1.427	0.000707
ORF7a	14	T14I	aCt	aTt	13	13	AY.6	0.000535
ORF7a	14	T14I	aCt	aTt	13	13	B.1.1.214	0.000721
ORF7a	14	T14I	aCt	aTt	12	12	AY.98	0.000948
ORF7a	14	T14I	aCt	aTt	12	12	P.1.16	0.004489
ORF7a	14	T14I	aCt	aTt	11	11	AY.41	0.003233
ORF7a	14	T14I	aCt	aTt	11	11	AY.46.6	0.000794
ORF7a	14	T14I	aCt	aTt	11	11	AY.75.1	0.001983
ORF7a	14	T14I	aCt	aTt	11	11	B.1.637	0.000804
ORF7a	14	T14I	aCt	aTt	10	10	AY.116	0.002868
ORF7a	14	T14I	aCt	aTt	10	10	B.1.1.222	0.00204
ORF7a	14	T14I	aCt	aTt	10	10	B.1.258.17	0.00104
ORF7a	14	T14I	aCt	aTt	10	10	B.1.582	0.004907
ORF7a	14	T14I	aCt	aTt	10	10	C.23	0.05814
ORF7a	14	T14I	aCt	aTt	9	9	AY.109	0.006657
ORF7a	14	T14I	aCt	aTt	9	9	AY.113	0.001282
ORF7a	14	T14I	aCt	aTt	9	9	AY.59	0.004767
ORF7a	14	T14I	aCt	aTt	9	9	AY.9.2	0.000331
ORF7a	14	T14I	aCt	aTt	9	9	B	0.00115
ORF7a	14	T14I	aCt	aTt	9	9	B.1.1.28	0.002801
ORF7a	14	T14I	aCt	aTt	9	9	B.1.83	0.138462
ORF7a	14	T14I	aCt	aTt	8	8	B.1.177.4	0.001688
ORF7a	14	T14I	aCt	aTt	8	8	B.1.311	0.002197
ORF7a	14	T14I	aCt	aTt	8	8	B.1.438.1	0.000858
ORF7a	14	T14I	aCt	aTt	8	8	B.1.619	0.006969
ORF7a	14	T14I	aCt	aTt	8	8	Q.4	0.003638
ORF7a	14	T14I	aCt	aTt	7	7	AY.34	0.000679
ORF7a	14	T14I	aCt	aTt	7	7	AY.99.2	0.000645
ORF7a	14	T14I	aCt	aTt	7	7	B.1.258.3	0.011725
ORF7a	14	T14I	aCt	aTt	7	7	B.1.36.1	0.007982
ORF7a	14	T14I	aCt	aTt	7	7	B.1.408	0.02583
ORF7a	14	T14I	aCt	aTt	7	7	P.1.14	0.000335
ORF7a	14	T14I	aCt	aTt	6	6	AY.117	0.000507
ORF7a	14	T14I	aCt	aTt	6	6	B.1.1.25	0.003411
ORF7a	14	T14I	aCt	aTt	6	6	B.1.1.33	0.002525
ORF7a	14	T14I	aCt	aTt	6	6	B.1.177.56	0.004005
ORF7a	14	T14I	aCt	aTt	6	6	B.1.177.81	0.001136
ORF7a	14	T14I	aCt	aTt	6	6	B.1.596	0.000523
ORF7a	14	T14I	aCt	aTt	6	6	B.1.617.1	0.000774
ORF7a	14	T14I	aCt	aTt	6	6	P.1.15	0.001394
ORF7a	14	T14I	aCt	aTt	5	5	AY.36	0.000741
ORF7a	14	T14I	aCt	aTt	5	5	B.1.1.284	0.000537
ORF7a	14	T14I	aCt	aTt	5	5	B.1.1.403	0.128205
ORF7a	14	T14I	aCt	aTt	5	5	B.1.1.89	0.030303
ORF7a	14	T14I	aCt	aTt	5	5	D.2	0.000375
ORF7a	14	T14I	aCt	aTt	4	4	AY.118	0.000251
ORF7a	14	T14I	aCt	aTt	4	4	AY.15	0.008889
ORF7a	14	T14I	aCt	aTt	4	4	AY.35	0.000932
ORF7a	14	T14I	aCt	aTt	4	4	AY.4.2.1	0.000596
ORF7a	14	T14I	aCt	aTt	4	4	AY.5.3	0.00135
ORF7a	14	T14I	aCt	aTt	4	4	AY.71	0.0019
ORF7a	14	T14I	aCt	aTt	4	4	AY.87	0.003331
ORF7a	14	T14I	aCt	aTt	4	4	B.1.1.348	0.003185
ORF7a	14	T14I	aCt	aTt	4	4	B.1.1.521	0.02139
ORF7a	14	T14I	aCt	aTt	4	4	B.1.1.70	0.001364
ORF7a	14	T14I	aCt	aTt	4	4	B.1.232	0.002149
ORF7a	14	T14I	aCt	aTt	4	4	B.1.240	0.000862
ORF7a	14	T14I	aCt	aTt	4	4	B.1.453	0.012945
ORF7a	14	T14I	aCt	aTt	4	4	B.1.558	0.018265
ORF7a	14	T14I	aCt	aTt	4	4	B.1.561	0.001588
ORF7a	14	T14I	aCt	aTt	4	4	B.1.587	0.00759
ORF7a	14	T14I	aCt	aTt	4	4	B.1.595	0.001044
ORF7a	14	T14I	aCt	aTt	4	4	B.6	0.00364
ORF7a	14	T14I	aCt	aTt	4	4	C.36	0.003643
ORF7a	14	T14I	aCt	aTt	3	3	AY.106	0.001005
ORF7a	14	T14I	aCt	aTt	3	3	AY.121	0.000406
ORF7a	14	T14I	aCt	aTt	3	3	AY.27	0.000194
ORF7a	14	T14I	aCt	aTt	3	3	AY.46	0.000312
ORF7a	14	T14I	aCt	aTt	3	3	AY.99	0.003148
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.170	0.003741
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.194	0.014851
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.243	0.012245
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.318	0.000905
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.39	0.001529
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.416	0.002715
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.434	0.001046
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.466	0.026087
ORF7a	14	T14I	aCt	aTt	3	3	B.1.157	0.008955
ORF7a	14	T14I	aCt	aTt	3	3	B.1.177.60	0.000655
ORF7a	14	T14I	aCt	aTt	3	3	B.1.177.73	0.001699
ORF7a	14	T14I	aCt	aTt	3	3	B.1.237	0.014925
ORF7a	14	T14I	aCt	aTt	3	3	B.1.346	0.003932
ORF7a	14	T14I	aCt	aTt	3	3	B.1.398	0.008929
ORF7a	14	T14I	aCt	aTt	3	3	B.1.413	0.012766
ORF7a	14	T14I	aCt	aTt	3	3	B.1.473	0.057692
ORF7a	14	T14I	aCt	aTt	3	3	B.1.497	0.000944
ORF7a	14	T14I	aCt	aTt	3	3	B.1.525	0.000339
ORF7a	14	T14I	aCt	aTt	3	3	L.3	0.010638
ORF7a	14	T14I	aCt	aTt	3	3	P.1.17	0.000485
ORF7a	14	T14I	aCt	aTt	3	3	R.1	0.00027
ORF7a	14	T14I	aCt	aTt	2	2	AD.2	0.000438
ORF7a	14	T14I	aCt	aTt	2	2	AY.107	0.000932
ORF7a	14	T14I	aCt	aTt	2	2	AY.28	0.003781
ORF7a	14	T14I	aCt	aTt	2	2	AY.30	0.000791
ORF7a	14	T14I	aCt	aTt	2	2	AY.34.1	0.00102
ORF7a	14	T14I	aCt	aTt	2	2	AY.37	0.000632
ORF7a	14	T14I	aCt	aTt	2	2	AY.39.1	0.000079
ORF7a	14	T14I	aCt	aTt	2	2	AY.45	0.000243
ORF7a	14	T14I	aCt	aTt	2	2	AY.46.3	0.001867
ORF7a	14	T14I	aCt	aTt	2	2	AY.51	0.001818
ORF7a	14	T14I	aCt	aTt	2	2	AY.62	0.000871
ORF7a	14	T14I	aCt	aTt	2	2	AY.7.2	0.001119
ORF7a	14	T14I	aCt	aTt	2	2	AY.78	0.003082
ORF7a	14	T14I	aCt	aTt	2	2	AY.98.1	0.000097
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.274	0.010101
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.306	0.000877
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.326	0.003521
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.37	0.000386
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.47	0.010695
ORF7a	14	T14I	aCt	aTt	2	2	B.1.111	0.00235
ORF7a	14	T14I	aCt	aTt	2	2	B.1.160.30	0.005952
ORF7a	14	T14I	aCt	aTt	2	2	B.1.177.42	0.001789
ORF7a	14	T14I	aCt	aTt	2	2	B.1.177.43	0.002954
ORF7a	14	T14I	aCt	aTt	2	2	B.1.213	0.029851
ORF7a	14	T14I	aCt	aTt	2	2	B.1.236	0.004107
ORF7a	14	T14I	aCt	aTt	2	2	B.1.404	0.002604
ORF7a	14	T14I	aCt	aTt	2	2	B.1.416.1	0.003125
ORF7a	14	T14I	aCt	aTt	2	2	B.1.420	0.020833
ORF7a	14	T14I	aCt	aTt	2	2	B.1.517	0.000854
ORF7a	14	T14I	aCt	aTt	2	2	B.1.524	0.002813
ORF7a	14	T14I	aCt	aTt	2	2	B.6.6	0.001778
ORF7a	14	T14I	aCt	aTt	2	2	C.35	0.001548
ORF7a	14	T14I	aCt	aTt	2	2	P.1.12	0.000968
ORF7a	14	T14I	aCt	aTt	2	2	P.6	0.006289
ORF7a	14	T14I	aCt	aTt	1	1	A.1	0.000282
ORF7a	14	T14I	aCt	aTt	1	1	A.2.5	0.000499
ORF7a	14	T14I	aCt	aTt	1	1	A.2.5.1	0.004808
ORF7a	14	T14I	aCt	aTt	1	1	A.27	0.001656
ORF7a	14	T14I	aCt	aTt	1	1	AE.5	0.018519
ORF7a	14	T14I	aCt	aTt	1	1	AF.1	0.037037
ORF7a	14	T14I	aCt	aTt	1	1	AU.2	0.002421
ORF7a	14	T14I	aCt	aTt	1	1	AU.3	0.00211
ORF7a	14	T14I	aCt	aTt	1	1	AY.1	0.000396
ORF7a	14	T14I	aCt	aTt	1	1	AY.105	0.000643
ORF7a	14	T14I	aCt	aTt	1	1	AY.108	0.001103
ORF7a	14	T14I	aCt	aTt	1	1	AY.110	0.000113
ORF7a	14	T14I	aCt	aTt	1	1	AY.111	0.000183
ORF7a	14	T14I	aCt	aTt	1	1	AY.114	0.000231
ORF7a	14	T14I	aCt	aTt	1	1	AY.21	0.001898
ORF7a	14	T14I	aCt	aTt	1	1	AY.23.1	0.000417
ORF7a	14	T14I	aCt	aTt	1	1	AY.24	0.000431
ORF7a	14	T14I	aCt	aTt	1	1	AY.32	0.000532
ORF7a	14	T14I	aCt	aTt	1	1	AY.38	0.000499
ORF7a	14	T14I	aCt	aTt	1	1	AY.39.1.1	0.000725
ORF7a	14	T14I	aCt	aTt	1	1	AY.46.1	0.001027
ORF7a	14	T14I	aCt	aTt	1	1	AY.46.2	0.000635
ORF7a	14	T14I	aCt	aTt	1	1	AY.46.5	0.000198
ORF7a	14	T14I	aCt	aTt	1	1	AY.5.4	0.000277
ORF7a	14	T14I	aCt	aTt	1	1	AY.55	0.000917
ORF7a	14	T14I	aCt	aTt	1	1	AY.57	0.000656
ORF7a	14	T14I	aCt	aTt	1	1	AY.7	0.000196
ORF7a	14	T14I	aCt	aTt	1	1	AY.73	0.000665
ORF7a	14	T14I	aCt	aTt	1	1	AY.76	0.004831
ORF7a	14	T14I	aCt	aTt	1	1	AY.84	0.000437
ORF7a	14	T14I	aCt	aTt	1	1	AY.89	0.004902
ORF7a	14	T14I	aCt	aTt	1	1	AY.90	0.000684
ORF7a	14	T14I	aCt	aTt	1	1	AY.91.1	0.004065
ORF7a	14	T14I	aCt	aTt	1	1	AY.92	0.000287
ORF7a	14	T14I	aCt	aTt	1	1	AY.94	0.000443
ORF7a	14	T14I	aCt	aTt	1	1	AY.95	0.000761
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.1	0.000327
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.12	0.007463
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.132	0.014925
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.135	0.004695
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.192	0.002309
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.216	0.00089
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.220	0.001859
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.27	0.00565
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.270	0.010309
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.277	0.000759
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.279	0.001121
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.298	0.000862
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.303	0.002762
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.304	0.002809
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.312	0.001912
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.354	0.004386
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.368	0.003086
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.369	0.000446
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.375	0.011905
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.376	0.005952
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.383	0.0625
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.420	0.001006
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.429	0.004608
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.432	0.001266
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.462	0.008621
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.486	0.001577
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.507	0.008696
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.54	0.003021
ORF7a	14	T14I	aCt	aTt	1	1	B.1.126	0.001276
ORF7a	14	T14I	aCt	aTt	1	1	B.1.134	0.005464
ORF7a	14	T14I	aCt	aTt	1	1	B.1.139	0.000733
ORF7a	14	T14I	aCt	aTt	1	1	B.1.147	0.000756
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.28	0.002924
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.29	0.004219
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.32	0.004292
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.33	0.004425
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.9	0.007194
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.12	0.000152
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.16	0.000664
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.2	0.004545
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.21	0.000076
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.23	0.003236
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.30	0.002513
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.31	0.011494
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.33	0.001645
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.5	0.001242
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.52	0.001757
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.7	0.000165
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.77	0.000726
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.82	0.000477
ORF7a	14	T14I	aCt	aTt	1	1	B.1.206	0.000816
ORF7a	14	T14I	aCt	aTt	1	1	B.1.22	0.001318
ORF7a	14	T14I	aCt	aTt	1	1	B.1.221.3	0.000833
ORF7a	14	T14I	aCt	aTt	1	1	B.1.222	0.001692
ORF7a	14	T14I	aCt	aTt	1	1	B.1.239	0.001221
ORF7a	14	T14I	aCt	aTt	1	1	B.1.241	0.000812
ORF7a	14	T14I	aCt	aTt	1	1	B.1.247	0.014925
ORF7a	14	T14I	aCt	aTt	1	1	B.1.251	0.021739
ORF7a	14	T14I	aCt	aTt	1	1	B.1.260	0.003344
ORF7a	14	T14I	aCt	aTt	1	1	B.1.265	0.001271
ORF7a	14	T14I	aCt	aTt	1	1	B.1.320	0.001245
ORF7a	14	T14I	aCt	aTt	1	1	B.1.326	0.007576
ORF7a	14	T14I	aCt	aTt	1	1	B.1.329	0.000608
ORF7a	14	T14I	aCt	aTt	1	1	B.1.332	0.003497
ORF7a	14	T14I	aCt	aTt	1	1	B.1.349	0.000715
ORF7a	14	T14I	aCt	aTt	1	1	B.1.351.3	0.000876
ORF7a	14	T14I	aCt	aTt	1	1	B.1.354	0.043478
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.10	0.004785
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.17	0.000494
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.22	0.001208
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.35	0.002604
ORF7a	14	T14I	aCt	aTt	1	1	B.1.367	0.000792
ORF7a	14	T14I	aCt	aTt	1	1	B.1.381	0.007812
ORF7a	14	T14I	aCt	aTt	1	1	B.1.396	0.000706
ORF7a	14	T14I	aCt	aTt	1	1	B.1.399	0.001934
ORF7a	14	T14I	aCt	aTt	1	1	B.1.400	0.000429
ORF7a	14	T14I	aCt	aTt	1	1	B.1.411	0.003704
ORF7a	14	T14I	aCt	aTt	1	1	B.1.428.3	0.012821
ORF7a	14	T14I	aCt	aTt	1	1	B.1.462	0.007246
ORF7a	14	T14I	aCt	aTt	1	1	B.1.470	0.001404
ORF7a	14	T14I	aCt	aTt	1	1	B.1.480	0.002488
ORF7a	14	T14I	aCt	aTt	1	1	B.1.499	0.00105
ORF7a	14	T14I	aCt	aTt	1	1	B.1.503	0.002488
ORF7a	14	T14I	aCt	aTt	1	1	B.1.509	0.000866
ORF7a	14	T14I	aCt	aTt	1	1	B.1.515	0.014493
ORF7a	14	T14I	aCt	aTt	1	1	B.1.533	0.009615
ORF7a	14	T14I	aCt	aTt	1	1	B.1.564	0.000426
ORF7a	14	T14I	aCt	aTt	1	1	B.1.567	0.003333
ORF7a	14	T14I	aCt	aTt	1	1	B.1.568	0.001111
ORF7a	14	T14I	aCt	aTt	1	1	B.1.578	0.017857
ORF7a	14	T14I	aCt	aTt	1	1	B.1.580	0.004065
ORF7a	14	T14I	aCt	aTt	1	1	B.1.598	0.016949
ORF7a	14	T14I	aCt	aTt	1	1	B.1.609	0.000479
ORF7a	14	T14I	aCt	aTt	1	1	B.1.620	0.000946
ORF7a	14	T14I	aCt	aTt	1	1	B.1.621.1	0.000506
ORF7a	14	T14I	aCt	aTt	1	1	B.1.625	0.002353
ORF7a	14	T14I	aCt	aTt	1	1	B.1.630	0.005236
ORF7a	14	T14I	aCt	aTt	1	1	B.1.9.5	0.005682
ORF7a	14	T14I	aCt	aTt	1	1	B.20	0.023256
ORF7a	14	T14I	aCt	aTt	1	1	C.1	0.002392
ORF7a	14	T14I	aCt	aTt	1	1	C.33	0.058824
ORF7a	14	T14I	aCt	aTt	1	1	C.8	0.004464
ORF7a	14	T14I	aCt	aTt	1	1	N.3	0.005814
ORF7a	14	T14I	aCt	aTt	1	1	P.1.1	0.000318
ORF7a	14	T14I	aCt	aTt	1	1	P.1.13	0.000898
ORF7a	14	T14I	aCt	aTt	1	1	P.1.4	0.000977
ORF7a	14	T14I	aCt	aTt	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.