CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = S83del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a83S83del1delTca-ca7397260.98240927640-27642
ORF7a83S83del1deltcAtc-73950.006765927640-27642
ORF7a83S83del1delTCA-NN73930.0040595427640-27642
ORF7a83S83del1deltCat-a73920.0027063627640-27642
ORF7a83S83del1delTCa-Ta73920.0027063627640-27642
ORF7a83S83del1deltCAtT-73910.0013531827640-27642

Details of the mutation S83del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a83S83del1Tca-ca726739All0.000139
ORF7a83S83del1tcAtc-5739All0.000001
ORF7a83S83del1TCA-NN3739All0.000001
ORF7a83S83del1tCat-a2739All0
ORF7a83S83del1TCa-Ta2739All0
ORF7a83S83del1tCAtT-1739All0
ORF7a83S83del1Tca-ca567569AY.40.000882
ORF7a83S83del1TCa-Ta2569AY.40.000003
ORF7a83S83del1Tca-ca2225AY.1030.000137
ORF7a83S83del1tcAtc-325AY.1030.000019
ORF7a83S83del1Tca-ca2222B.1.1.70.00002
ORF7a83S83del1Tca-ca1617AY.390.000395
ORF7a83S83del1TCA-NN117AY.390.000025
ORF7a83S83del1Tca-ca99AY.1000.000414
ORF7a83S83del1Tca-ca99AY.1200.000335
ORF7a83S83del1Tca-ca78AY.440.000043
ORF7a83S83del1TCA-NN18AY.440.000006
ORF7a83S83del1Tca-ca77AY.4.20.000152
ORF7a83S83del1Tca-ca77AY.430.000031
ORF7a83S83del1Tca-ca77B.1.617.20.000026
ORF7a83S83del1Tca-ca66AY.46.60.000433
ORF7a83S83del1Tca-ca44AY.1170.000338
ORF7a83S83del1Tca-ca44AY.460.000416
ORF7a83S83del1Tca-ca33AY.30.00003
ORF7a83S83del1Tca-ca33AY.470.000093
ORF7a83S83del1Tca-ca33AY.710.001425
ORF7a83S83del1Tca-ca33B.1.20.000026
ORF7a83S83del1Tca-ca22AY.1100.000225
ORF7a83S83del1Tca-ca12AY.200.000039
ORF7a83S83del1tCAtT-12AY.200.000039
ORF7a83S83del1Tca-ca22AY.250.000012
ORF7a83S83del1Tca-ca22AY.290.000032
ORF7a83S83del1TCA-NN12B.10.000009
ORF7a83S83del1Tca-ca12B.10.000009
ORF7a83S83del1Tca-ca22B.1.1.2840.000215
ORF7a83S83del1Tca-ca11A0.000387
ORF7a83S83del1Tca-ca11AY.1110.000183
ORF7a83S83del1tcAtc-11AY.1140.000231
ORF7a83S83del1Tca-ca11AY.230.00007
ORF7a83S83del1Tca-ca11AY.260.000028
ORF7a83S83del1Tca-ca11AY.360.000148
ORF7a83S83del1Tca-ca11AY.39.10.00004
ORF7a83S83del1Tca-ca11AY.4.50.000107
ORF7a83S83del1Tca-ca11AY.46.40.000165
ORF7a83S83del1Tca-ca11AY.540.000095
ORF7a83S83del1tCat-a11AY.60.000041
ORF7a83S83del1Tca-ca11AY.98.10.000048
ORF7a83S83del1Tca-ca11B.1.1.2140.000055
ORF7a83S83del1Tca-ca11B.1.177.100.000878
ORF7a83S83del1Tca-ca11B.1.177.210.000076
ORF7a83S83del1tcAtc-11B.1.3750.00082
ORF7a83S83del1Tca-ca11B.1.4270.00005
ORF7a83S83del1tCat-a11B.1.5260.000024
ORF7a83S83del1Tca-ca11B.1.5350.028571
ORF7a83S83del1Tca-ca11P.10.000016
ORF7a83S83del1Tca-ca11Q.80.000165