CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = S83P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a83S83PnonsynTcaCca410410127640-27642

Details of the mutation S83P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a83S83PTcaCca410410All0.000078
ORF7a83S83PTcaCca133133B.1.1.70.000119
ORF7a83S83PTcaCca4949AY.440.000298
ORF7a83S83PTcaCca3434A.2.50.016966
ORF7a83S83PTcaCca3434AY.1030.000211
ORF7a83S83PTcaCca2323B.1.1.5190.000913
ORF7a83S83PTcaCca1515B.1.1.3170.006175
ORF7a83S83PTcaCca1515B.1.617.20.000056
ORF7a83S83PTcaCca1313AY.40.00002
ORF7a83S83PTcaCca1010AY.260.000283
ORF7a83S83PTcaCca1010C.370.001161
ORF7a83S83PTcaCca88B.1.20.00007
ORF7a83S83PTcaCca55AY.470.000156
ORF7a83S83PTcaCca55P.10.000079
ORF7a83S83PTcaCca44B.1.10.000073
ORF7a83S83PTcaCca33AY.1020.00008
ORF7a83S83PTcaCca33AY.1190.000106
ORF7a83S83PTcaCca33C.36.30.001702
ORF7a83S83PTcaCca220.111111
ORF7a83S83PTcaCca22AY.1170.000169
ORF7a83S83PTcaCca22AY.390.000049
ORF7a83S83PTcaCca22AY.430.000009
ORF7a83S83PTcaCca22B.1.1.4640.002946
ORF7a83S83PTcaCca22B.1.1770.000026
ORF7a83S83PTcaCca22B.1.2400.000431
ORF7a83S83PTcaCca22B.1.5260.000047
ORF7a83S83PTcaCca22B.1.6370.000146
ORF7a83S83PTcaCca22Q.30.00029
ORF7a83S83PTcaCca11AD.20.000219
ORF7a83S83PTcaCca11AY.1130.000142
ORF7a83S83PTcaCca11AY.1200.000037
ORF7a83S83PTcaCca11AY.200.000039
ORF7a83S83PTcaCca11AY.290.000016
ORF7a83S83PTcaCca11AY.30.00001
ORF7a83S83PTcaCca11AY.3.10.000085
ORF7a83S83PTcaCca11AY.46.60.000072
ORF7a83S83PTcaCca11AY.540.000095
ORF7a83S83PTcaCca11AY.590.00053
ORF7a83S83PTcaCca11AY.670.000464
ORF7a83S83PTcaCca11AY.850.000427
ORF7a83S83PTcaCca11AY.99.10.001553
ORF7a83S83PTcaCca11B.10.000009
ORF7a83S83PTcaCca11B.1.1.1530.001095
ORF7a83S83PTcaCca11B.1.1.2140.000055
ORF7a83S83PTcaCca11B.1.2430.00007
ORF7a83S83PTcaCca11B.1.2580.000067
ORF7a83S83PTcaCca11B.1.3510.00003
ORF7a83S83PTcaCca11B.1.5820.000491
ORF7a83S83PTcaCca11B.1.5960.000087
ORF7a83S83PTcaCca11C.360.000911
ORF7a83S83PTcaCca11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.