CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = S81del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a81S81deldelTCA---68206820127634-27636

Details of the mutation S81del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a81S81delTCA---68206820All0.001304
ORF7a81S81delTCA---20362036AY.40.003169
ORF7a81S81delTCA---11871187B.1.1.70.001063
ORF7a81S81delTCA---407407AY.4.20.008827
ORF7a81S81delTCA---229229B.1.617.20.000862
ORF7a81S81delTCA---216216AY.1030.001341
ORF7a81S81delTCA---179179AY.390.004423
ORF7a81S81delTCA---179179B.1.177.210.013688
ORF7a81S81delTCA---155155AY.430.000687
ORF7a81S81delTCA---146146AY.440.000889
ORF7a81S81delTCA---114114AY.1000.005245
ORF7a81S81delTCA---113113AY.290.001782
ORF7a81S81delTCA---113113AY.30.001124
ORF7a81S81delTCA---9494AY.260.002661
ORF7a81S81delTCA---8484AY.250.000505
ORF7a81S81delTCA---7676AY.420.003057
ORF7a81S81delTCA---7373AY.980.005767
ORF7a81S81delTCA---5858AY.1200.002156
ORF7a81S81delTCA---5555B.1.1770.000724
ORF7a81S81delTCA---5555B.1.20.000484
ORF7a81S81delTCA---5454B.1.5260.001269
ORF7a81S81delTCA---4444B.1.6210.003895
ORF7a81S81delTCA---4141B.1.1.2840.004403
ORF7a81S81delTCA---3838B.10.000348
ORF7a81S81delTCA---3535P.10.000551
ORF7a81S81delTCA---3434AY.3.10.002899
ORF7a81S81delTCA---3232AY.46.60.002311
ORF7a81S81delTCA---3030AY.1190.001059
ORF7a81S81delTCA---2828AY.360.00415
ORF7a81S81delTCA---2727AY.470.00084
ORF7a81S81delTCA---2626AY.200.00101
ORF7a81S81delTCA---2626AY.7.20.014541
ORF7a81S81delTCA---2626B.1.1.2140.001442
ORF7a81S81delTCA---2525AY.50.000516
ORF7a81S81delTCA---2424AY.60.000987
ORF7a81S81delTCA---2222B.1.6370.001608
ORF7a81S81delTCA---2020B.1.3510.000595
ORF7a81S81delTCA---1919AY.46.40.003126
ORF7a81S81delTCA---1818AY.750.001008
ORF7a81S81delTCA---1717B.1.1600.00053
ORF7a81S81delTCA---1717B.1.4290.0004
ORF7a81S81delTCA---1515AY.300.005936
ORF7a81S81delTCA---1515AY.98.10.000726
ORF7a81S81delTCA---1515B.1.5250.001697
ORF7a81S81delTCA---1515C.370.001741
ORF7a81S81delTCA---1414AY.1170.001183
ORF7a81S81delTCA---1414B.1.10.000254
ORF7a81S81delTCA---1414B.1.1.2580.045603
ORF7a81S81delTCA---1212AY.1160.003441
ORF7a81S81delTCA---1212AY.230.000837
ORF7a81S81delTCA---1212AY.710.005701
ORF7a81S81delTCA---1212B.1.3240.019262
ORF7a81S81delTCA---1212R.10.00108
ORF7a81S81delTCA---1111AY.1100.00124
ORF7a81S81delTCA---1111AY.1210.001488
ORF7a81S81delTCA---1111AY.90.000744
ORF7a81S81delTCA---1111B.1.5960.000959
ORF7a81S81delTCA---1111N.70.323529
ORF7a81S81delTCA---1010AY.1180.000626
ORF7a81S81delTCA---1010AY.39.10.000396
ORF7a81S81delTCA---1010B.1.4270.000505
ORF7a81S81delTCA---1010Q.80.001649
ORF7a81S81delTCA---99AY.99.20.000829
ORF7a81S81delTCA---99B.1.1.5190.000357
ORF7a81S81delTCA---99L.10.017143
ORF7a81S81delTCA---88AY.1130.001139
ORF7a81S81delTCA---88AY.120.10.002568
ORF7a81S81delTCA---88AY.70.001568
ORF7a81S81delTCA---88B.1.1.2310.024768
ORF7a81S81delTCA---88B.1.160.310.064516
ORF7a81S81delTCA---77AY.29.10.001544
ORF7a81S81delTCA---77AY.340.000679
ORF7a81S81delTCA---77AY.350.001631
ORF7a81S81delTCA---77AY.450.000852
ORF7a81S81delTCA---77AY.540.000667
ORF7a81S81delTCA---77AY.9.20.000257
ORF7a81S81delTCA---66AY.330.000401
ORF7a81S81delTCA---66P.1.150.001394
ORF7a81S81delTCA---55AY.1060.001674
ORF7a81S81delTCA---55AY.1140.001156
ORF7a81S81delTCA---55AY.610.000524
ORF7a81S81delTCA---55AY.800.005643
ORF7a81S81delTCA---55B.1.2430.000348
ORF7a81S81delTCA---55B.1.3750.004098
ORF7a81S81delTCA---55B.1.700.121951
ORF7a81S81delTCA---44A0.001548
ORF7a81S81delTCA---44AY.1020.000106
ORF7a81S81delTCA---44AY.140.000352
ORF7a81S81delTCA---44AY.4.50.00043
ORF7a81S81delTCA---44AY.680.001095
ORF7a81S81delTCA---44B.1.1.250.002274
ORF7a81S81delTCA---44B.1.2340.000528
ORF7a81S81delTCA---44Q.10.000505
ORF7a81S81delTCA---33AY.130.000483
ORF7a81S81delTCA---33AY.240.001293
ORF7a81S81delTCA---33AY.370.000948
ORF7a81S81delTCA---33AY.530.000863
ORF7a81S81delTCA---33AY.7.10.000338
ORF7a81S81delTCA---33AY.880.002653
ORF7a81S81delTCA---33B.1.1.1210.007282
ORF7a81S81delTCA---33B.1.1.1700.003741
ORF7a81S81delTCA---33B.1.1.370.000579
ORF7a81S81delTCA---33B.1.214.20.001799
ORF7a81S81delTCA---33B.1.351.20.000908
ORF7a81S81delTCA---33B.1.5750.00091
ORF7a81S81delTCA---33B.1.6260.017143
ORF7a81S81delTCA---33C.120.021583
ORF7a81S81delTCA---220.111111
ORF7a81S81delTCA---22A.280.005291
ORF7a81S81delTCA---22AY.1080.002205
ORF7a81S81delTCA---22AY.1090.001479
ORF7a81S81delTCA---22AY.190.002281
ORF7a81S81delTCA---22AY.270.000129
ORF7a81S81delTCA---22AY.4.2.10.000298
ORF7a81S81delTCA---22AY.460.000208
ORF7a81S81delTCA---22AY.480.00093
ORF7a81S81delTCA---22AY.650.001066
ORF7a81S81delTCA---22AY.75.10.000361
ORF7a81S81delTCA---22AY.850.000854
ORF7a81S81delTCA---22AY.9.10.000167
ORF7a81S81delTCA---22AY.900.001369
ORF7a81S81delTCA---22AY.910.001461
ORF7a81S81delTCA---22AY.920.000575
ORF7a81S81delTCA---22AY.990.002099
ORF7a81S81delTCA---22B0.000256
ORF7a81S81delTCA---22B.1.1.2200.003717
ORF7a81S81delTCA---22B.1.1.5210.010695
ORF7a81S81delTCA---22B.1.1.700.000682
ORF7a81S81delTCA---22B.1.177.100.001756
ORF7a81S81delTCA---22B.1.177.150.001262
ORF7a81S81delTCA---22B.1.177.550.004662
ORF7a81S81delTCA---22B.1.177.600.000437
ORF7a81S81delTCA---22B.1.177.810.000379
ORF7a81S81delTCA---22B.1.177.860.000367
ORF7a81S81delTCA---22B.1.2210.000142
ORF7a81S81delTCA---22B.1.2400.000431
ORF7a81S81delTCA---22B.1.2580.000133
ORF7a81S81delTCA---22B.1.258.110.000793
ORF7a81S81delTCA---22B.1.360.000292
ORF7a81S81delTCA---22B.1.4990.002101
ORF7a81S81delTCA---22B.1.517.10.010526
ORF7a81S81delTCA---22B.1.5950.000522
ORF7a81S81delTCA---22P.1.140.000096
ORF7a81S81delTCA---11A.10.000282
ORF7a81S81delTCA---11A.2.20.001689
ORF7a81S81delTCA---11A.230.010526
ORF7a81S81delTCA---11AU.30.00211
ORF7a81S81delTCA---11AY.1010.00049
ORF7a81S81delTCA---11AY.1040.001984
ORF7a81S81delTCA---11AY.1110.000183
ORF7a81S81delTCA---11AY.116.10.000311
ORF7a81S81delTCA---11AY.120.000316
ORF7a81S81delTCA---11AY.160.00038
ORF7a81S81delTCA---11AY.34.10.00051
ORF7a81S81delTCA---11AY.380.000499
ORF7a81S81delTCA---11AY.4.10.000737
ORF7a81S81delTCA---11AY.4.40.000409
ORF7a81S81delTCA---11AY.46.50.000198
ORF7a81S81delTCA---11AY.520.000814
ORF7a81S81delTCA---11AY.590.00053
ORF7a81S81delTCA---11AY.620.000436
ORF7a81S81delTCA---11AY.660.00107
ORF7a81S81delTCA---11AY.690.000187
ORF7a81S81delTCA---11AY.700.000209
ORF7a81S81delTCA---11AY.730.000665
ORF7a81S81delTCA---11AY.840.000437
ORF7a81S81delTCA---11AY.870.000833
ORF7a81S81delTCA---11AY.950.000761
ORF7a81S81delTCA---11AZ.20.000821
ORF7a81S81delTCA---11B.1.1.10.000327
ORF7a81S81delTCA---11B.1.1.1740.003378
ORF7a81S81delTCA---11B.1.1.1920.002309
ORF7a81S81delTCA---11B.1.1.1940.00495
ORF7a81S81delTCA---11B.1.1.2050.003717
ORF7a81S81delTCA---11B.1.1.2070.001182
ORF7a81S81delTCA---11B.1.1.2650.003155
ORF7a81S81delTCA---11B.1.1.2770.000759
ORF7a81S81delTCA---11B.1.1.3030.002762
ORF7a81S81delTCA---11B.1.1.3170.000412
ORF7a81S81delTCA---11B.1.1.3180.000302
ORF7a81S81delTCA---11B.1.1.330.000421
ORF7a81S81delTCA---11B.1.1.3660.015873
ORF7a81S81delTCA---11B.1.1.4370.010417
ORF7a81S81delTCA---11B.1.1.4480.002033
ORF7a81S81delTCA---11B.1.1150.021739
ORF7a81S81delTCA---11B.1.160.160.000929
ORF7a81S81delTCA---11B.1.177.310.011494
ORF7a81S81delTCA---11B.1.177.40.000211
ORF7a81S81delTCA---11B.1.177.500.004695
ORF7a81S81delTCA---11B.1.177.60.000977
ORF7a81S81delTCA---11B.1.177.620.001192
ORF7a81S81delTCA---11B.1.221.10.002907
ORF7a81S81delTCA---11B.1.2360.002053
ORF7a81S81delTCA---11B.1.2520.006623
ORF7a81S81delTCA---11B.1.258.170.000104
ORF7a81S81delTCA---11B.1.2650.001271
ORF7a81S81delTCA---11B.1.3190.003049
ORF7a81S81delTCA---11B.1.351.30.000876
ORF7a81S81delTCA---11B.1.36.310.001751
ORF7a81S81delTCA---11B.1.3710.001122
ORF7a81S81delTCA---11B.1.3960.000706
ORF7a81S81delTCA---11B.1.4060.006061
ORF7a81S81delTCA---11B.1.4590.004082
ORF7a81S81delTCA---11B.1.466.20.000391
ORF7a81S81delTCA---11B.1.4680.005714
ORF7a81S81delTCA---11B.1.4700.001404
ORF7a81S81delTCA---11B.1.5270.003704
ORF7a81S81delTCA---11B.1.5350.028571
ORF7a81S81delTCA---11B.1.564.10.001577
ORF7a81S81delTCA---11B.1.5680.001111
ORF7a81S81delTCA---11B.1.5760.000907
ORF7a81S81delTCA---11B.1.5770.000687
ORF7a81S81delTCA---11B.1.5820.000491
ORF7a81S81delTCA---11B.1.6020.006536
ORF7a81S81delTCA---11B.1.617.10.000129
ORF7a81S81delTCA---11B.1.6200.000946
ORF7a81S81delTCA---11B.1.621.10.000506
ORF7a81S81delTCA---11B.1.6280.000352
ORF7a81S81delTCA---11B.1.6380.052632
ORF7a81S81delTCA---11B.1.88.10.004808
ORF7a81S81delTCA---11B.1.9.10.032258
ORF7a81S81delTCA---11B.1.930.000934
ORF7a81S81delTCA---11C.36.30.000567
ORF7a81S81delTCA---11D.20.000075
ORF7a81S81delTCA---11N.50.001767
ORF7a81S81delTCA---11P.1.10.000318
ORF7a81S81delTCA---11P.1.130.000898
ORF7a81S81delTCA---11P.1.160.000374
ORF7a81S81delTCA---11P.1.30.034483
ORF7a81S81delTCA---11P.1.40.000977
ORF7a81S81delTCA---11P.20.000187
ORF7a81S81delTCA---11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.