CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = S81S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a81S81SsyntcAtcG3471910.55043227634-27636
ORF7a81S81SsyntcAtcT3471360.39193127634-27636
ORF7a81S81SsyntcAtcC347200.057636927634-27636

Details of the mutation S81S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a81S81StcAtcG191347All0.000037
ORF7a81S81StcAtcT136347All0.000026
ORF7a81S81StcAtcC20347All0.000004
ORF7a81S81StcAtcT3159AY.40.000048
ORF7a81S81StcAtcG2659AY.40.00004
ORF7a81S81StcAtcC259AY.40.000003
ORF7a81S81StcAtcG3636AY.250.000217
ORF7a81S81StcAtcG2135B.1.617.20.000079
ORF7a81S81StcAtcT935B.1.617.20.000034
ORF7a81S81StcAtcC535B.1.617.20.000019
ORF7a81S81StcAtcG3434AY.1080.037486
ORF7a81S81StcAtcG1626B.1.1.70.000014
ORF7a81S81StcAtcT1026B.1.1.70.000009
ORF7a81S81StcAtcT2525B.1.177.510.114155
ORF7a81S81StcAtcT710B.1.1770.000092
ORF7a81S81StcAtcC310B.1.1770.00004
ORF7a81S81StcAtcT99AY.4.20.000195
ORF7a81S81StcAtcT78AY.290.00011
ORF7a81S81StcAtcC18AY.290.000016
ORF7a81S81StcAtcG88AY.900.005476
ORF7a81S81StcAtcG57AY.1000.00023
ORF7a81S81StcAtcT17AY.1000.000046
ORF7a81S81StcAtcC17AY.1000.000046
ORF7a81S81StcAtcG47AY.1030.000025
ORF7a81S81StcAtcC37AY.1030.000019
ORF7a81S81StcAtcT56AY.98.10.000242
ORF7a81S81StcAtcG16AY.98.10.000048
ORF7a81S81StcAtcT35AY.440.000018
ORF7a81S81StcAtcC15AY.440.000006
ORF7a81S81StcAtcG15AY.440.000006
ORF7a81S81StcAtcG45AY.740.000463
ORF7a81S81StcAtcT15AY.740.000116
ORF7a81S81StcAtcT34AY.1020.00008
ORF7a81S81StcAtcC14AY.1020.000027
ORF7a81S81StcAtcG34AY.1130.000427
ORF7a81S81StcAtcT14AY.1130.000142
ORF7a81S81StcAtcG34B.1.20.000026
ORF7a81S81StcAtcT14B.1.20.000009
ORF7a81S81StcAtcT44B.1.258.140.003922
ORF7a81S81StcAtcG23B.1.10.000036
ORF7a81S81StcAtcT13B.1.10.000018
ORF7a81S81StcAtcG33P.20.00056
ORF7a81S81StcAtcG22AY.30.00002
ORF7a81S81StcAtcG12AY.430.000004
ORF7a81S81StcAtcC12AY.430.000004
ORF7a81S81StcAtcT22AY.46.60.000144
ORF7a81S81StcAtcT12B.10.000009
ORF7a81S81StcAtcG12B.10.000009
ORF7a81S81StcAtcT22B.1.3110.000549
ORF7a81S81StcAtcG22B.1.5550.044444
ORF7a81S81StcAtcG12B.1.617.10.000129
ORF7a81S81StcAtcC12B.1.617.10.000129
ORF7a81S81StcAtcG22B.1.6370.000146
ORF7a81S81StcAtcG22D.20.00015
ORF7a81S81StcAtcG11AY.1190.000035
ORF7a81S81StcAtcG11AY.160.00038
ORF7a81S81StcAtcG11AY.340.000097
ORF7a81S81StcAtcT11AY.34.10.00051
ORF7a81S81StcAtcG11AY.360.000148
ORF7a81S81StcAtcT11AY.390.000025
ORF7a81S81StcAtcG11AY.470.000031
ORF7a81S81StcAtcT11AY.590.00053
ORF7a81S81StcAtcG11AY.620.000436
ORF7a81S81StcAtcT11AY.9.20.000037
ORF7a81S81StcAtcG11AY.99.20.000092
ORF7a81S81StcAtcG11B.1.1.2890.002083
ORF7a81S81StcAtcT11B.1.1.5190.00004
ORF7a81S81StcAtcT11B.1.1.80.003584
ORF7a81S81StcAtcG11B.1.1600.000031
ORF7a81S81StcAtcT11B.1.177.440.000519
ORF7a81S81StcAtcT11B.1.177.810.000189
ORF7a81S81StcAtcT11B.1.177.850.005435
ORF7a81S81StcAtcT11B.1.2980.002114
ORF7a81S81StcAtcT11B.1.3240.001605
ORF7a81S81StcAtcG11B.1.5250.000113
ORF7a81S81StcAtcG11B.1.5260.000024
ORF7a81S81StcAtcC11B.1.6280.000352
ORF7a81S81StcAtcT11B.1.80.001972
ORF7a81S81StcAtcG11D.50.004975
ORF7a81S81StcAtcT11P.10.000016
ORF7a81S81StcAtcG11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.