CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = S60del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a60S60del1delAgc-gc4152520.60722927571-27573
ORF7a60S60del1delagCag-4151500.36144627571-27573
ORF7a60S60del1delAGC-NN41560.014457827571-27573
ORF7a60S60del1delaGca-c41530.0072289227571-27573
ORF7a60S60del1delAgCNg-41510.0024096427571-27573
ORF7a60S60del1delAGc-Ac41510.0024096427571-27573
ORF7a60S60del1delaGCa-N41510.0024096427571-27573
ORF7a60S60del1delaGCaA-41510.0024096427571-27573

Details of the mutation S60del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a60S60del1Agc-gc252415All0.000048
ORF7a60S60del1agCag-150415All0.000029
ORF7a60S60del1AGC-NN6415All0.000001
ORF7a60S60del1aGca-c3415All0.000001
ORF7a60S60del1aGCa-N1415All0
ORF7a60S60del1AGc-Ac1415All0
ORF7a60S60del1AgCNg-1415All0
ORF7a60S60del1aGCaA-1415All0
ORF7a60S60del1Agc-gc93109B.1.1.70.000083
ORF7a60S60del1agCag-12109B.1.1.70.000011
ORF7a60S60del1AGC-NN3109B.1.1.70.000003
ORF7a60S60del1AgCNg-1109B.1.1.70.000001
ORF7a60S60del1agCag-66103AY.40.000103
ORF7a60S60del1Agc-gc36103AY.40.000056
ORF7a60S60del1AGC-NN1103AY.40.000002
ORF7a60S60del1Agc-gc8284AY.290.001293
ORF7a60S60del1agCag-284AY.290.000032
ORF7a60S60del1agCag-1517AY.1030.000093
ORF7a60S60del1Agc-gc217AY.1030.000012
ORF7a60S60del1agCag-1515AY.1200.000558
ORF7a60S60del1Agc-gc612B.1.617.20.000023
ORF7a60S60del1agCag-412B.1.617.20.000015
ORF7a60S60del1aGca-c212B.1.617.20.000008
ORF7a60S60del1Agc-gc78AY.250.000042
ORF7a60S60del1aGCa-N18AY.250.000006
ORF7a60S60del1agCag-56AY.70.00098
ORF7a60S60del1Agc-gc16AY.70.000196
ORF7a60S60del1Agc-gc55B.1.1770.000066
ORF7a60S60del1Agc-gc35B.1.20.000026
ORF7a60S60del1agCag-25B.1.20.000018
ORF7a60S60del1agCag-44AY.390.000099
ORF7a60S60del1Agc-gc44AY.420.000161
ORF7a60S60del1agCag-23AY.1190.000071
ORF7a60S60del1Agc-gc13AY.1190.000035
ORF7a60S60del1agCag-33AY.260.000085
ORF7a60S60del1agCag-23AY.470.000062
ORF7a60S60del1Agc-gc13AY.470.000031
ORF7a60S60del1Agc-gc23B.1.5260.000047
ORF7a60S60del1agCag-13B.1.5260.000024
ORF7a60S60del1Agc-gc22AY.29.10.000441
ORF7a60S60del1agCag-22AY.30.00002
ORF7a60S60del1agCag-22AY.4.20.000043
ORF7a60S60del1Agc-gc12AY.430.000004
ORF7a60S60del1agCag-12AY.430.000004
ORF7a60S60del1agCag-22AY.440.000012
ORF7a60S60del1agCag-11AY.1000.000046
ORF7a60S60del1agCag-11AY.1170.000085
ORF7a60S60del1agCag-11AY.200.000039
ORF7a60S60del1Agc-gc11AY.230.00007
ORF7a60S60del1AGC-NN11AY.300.000396
ORF7a60S60del1Agc-gc11AY.39.10.00004
ORF7a60S60del1agCag-11AY.460.000104
ORF7a60S60del1Agc-gc11AY.490.003195
ORF7a60S60del1Agc-gc11AY.530.000288
ORF7a60S60del1agCag-11AY.540.000095
ORF7a60S60del1agCag-11AY.7.10.000113
ORF7a60S60del1aGCaA-11AY.7.20.000559
ORF7a60S60del1agCag-11AY.710.000475
ORF7a60S60del1agCag-11AY.820.001357
ORF7a60S60del1Agc-gc11AY.9.20.000037
ORF7a60S60del1agCag-11AY.99.20.000092
ORF7a60S60del1Agc-gc11B.10.000009
ORF7a60S60del1AGC-NN11B.1.1.1920.002309
ORF7a60S60del1aGca-c11B.1.1.3060.000438
ORF7a60S60del1AGc-Ac11B.1.6370.000073
ORF7a60S60del1agCag-11P.10.000016