CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 60 | S60del | del | AGC | --- | 35155 | 35155 | 1 | 27571-27573 |
Details of the mutation S60del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 60 | S60del | AGC | --- | 35155 | 35155 | All | 0.006724 |
ORF7a | 60 | S60del | AGC | --- | 12901 | 12901 | AY.4 | 0.020079 |
ORF7a | 60 | S60del | AGC | --- | 4548 | 4548 | B.1.1.7 | 0.004071 |
ORF7a | 60 | S60del | AGC | --- | 3555 | 3555 | B.1.617.2 | 0.013386 |
ORF7a | 60 | S60del | AGC | --- | 1658 | 1658 | AY.120.1 | 0.532263 |
ORF7a | 60 | S60del | AGC | --- | 1623 | 1623 | AY.25 | 0.009762 |
ORF7a | 60 | S60del | AGC | --- | 1026 | 1026 | AY.43 | 0.004546 |
ORF7a | 60 | S60del | AGC | --- | 888 | 888 | AY.103 | 0.005514 |
ORF7a | 60 | S60del | AGC | --- | 673 | 673 | AY.44 | 0.004096 |
ORF7a | 60 | S60del | AGC | --- | 529 | 529 | AY.3 | 0.005262 |
ORF7a | 60 | S60del | AGC | --- | 458 | 458 | AY.26 | 0.012966 |
ORF7a | 60 | S60del | AGC | --- | 407 | 407 | AY.39 | 0.010058 |
ORF7a | 60 | S60del | AGC | --- | 349 | 349 | AY.102 | 0.009253 |
ORF7a | 60 | S60del | AGC | --- | 291 | 291 | AY.4.2 | 0.006311 |
ORF7a | 60 | S60del | AGC | --- | 280 | 280 | AY.46.5 | 0.055556 |
ORF7a | 60 | S60del | AGC | --- | 246 | 246 | AY.120 | 0.009146 |
ORF7a | 60 | S60del | AGC | --- | 230 | 230 | AY.29 | 0.003628 |
ORF7a | 60 | S60del | AGC | --- | 224 | 224 | B.1.351 | 0.006659 |
ORF7a | 60 | S60del | AGC | --- | 185 | 185 | B.1.526 | 0.004348 |
ORF7a | 60 | S60del | AGC | --- | 184 | 184 | B.1.177.21 | 0.014071 |
ORF7a | 60 | S60del | AGC | --- | 178 | 178 | AY.98 | 0.014061 |
ORF7a | 60 | S60del | AGC | --- | 155 | 155 | AY.5 | 0.003201 |
ORF7a | 60 | S60del | AGC | --- | 149 | 149 | B.1.177 | 0.001962 |
ORF7a | 60 | S60del | AGC | --- | 144 | 144 | B.1 | 0.001319 |
ORF7a | 60 | S60del | AGC | --- | 141 | 141 | AY.100 | 0.006487 |
ORF7a | 60 | S60del | AGC | --- | 135 | 135 | AY.119 | 0.004767 |
ORF7a | 60 | S60del | AGC | --- | 134 | 134 | AY.47 | 0.004168 |
ORF7a | 60 | S60del | AGC | --- | 133 | 133 | AY.54 | 0.012681 |
ORF7a | 60 | S60del | AGC | --- | 118 | 118 | AY.6 | 0.004853 |
ORF7a | 60 | S60del | AGC | --- | 118 | 118 | AY.7.1 | 0.013299 |
ORF7a | 60 | S60del | AGC | --- | 108 | 108 | B.1.2 | 0.000951 |
ORF7a | 60 | S60del | AGC | --- | 92 | 92 | AY.46.4 | 0.015134 |
ORF7a | 60 | S60del | AGC | --- | 87 | 87 | AY.33 | 0.00581 |
ORF7a | 60 | S60del | AGC | --- | 79 | 79 | AY.5.4 | 0.021859 |
ORF7a | 60 | S60del | AGC | --- | 77 | 77 | AY.46.6 | 0.00556 |
ORF7a | 60 | S60del | AGC | --- | 72 | 72 | P.1 | 0.001134 |
ORF7a | 60 | S60del | AGC | --- | 71 | 71 | B.1.621 | 0.006285 |
ORF7a | 60 | S60del | AGC | --- | 69 | 69 | AY.3.1 | 0.005883 |
ORF7a | 60 | S60del | AGC | --- | 65 | 65 | AY.42 | 0.002615 |
ORF7a | 60 | S60del | AGC | --- | 63 | 63 | AY.20 | 0.002449 |
ORF7a | 60 | S60del | AGC | --- | 63 | 63 | AY.75 | 0.003529 |
ORF7a | 60 | S60del | AGC | --- | 61 | 61 | AY.45 | 0.007423 |
ORF7a | 60 | S60del | AGC | --- | 60 | 60 | AY.113 | 0.008543 |
ORF7a | 60 | S60del | AGC | --- | 58 | 58 | AY.39.1 | 0.002298 |
ORF7a | 60 | S60del | AGC | --- | 58 | 58 | AY.46 | 0.006037 |
ORF7a | 60 | S60del | AGC | --- | 55 | 55 | B.1.218 | 0.283505 |
ORF7a | 60 | S60del | AGC | --- | 54 | 54 | AY.23 | 0.003766 |
ORF7a | 60 | S60del | AGC | --- | 52 | 52 | AY.9.2 | 0.00191 |
ORF7a | 60 | S60del | AGC | --- | 52 | 52 | B.1.177.4 | 0.010975 |
ORF7a | 60 | S60del | AGC | --- | 50 | 50 | AY.116.1 | 0.015571 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | AY.118 | 0.002882 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | AY.13 | 0.007405 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | AY.9 | 0.003109 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | B.1.429 | 0.001082 |
ORF7a | 60 | S60del | AGC | --- | 45 | 45 | AY.91 | 0.032871 |
ORF7a | 60 | S60del | AGC | --- | 45 | 45 | AY.98.1 | 0.002179 |
ORF7a | 60 | S60del | AGC | --- | 44 | 44 | AY.107 | 0.020503 |
ORF7a | 60 | S60del | AGC | --- | 44 | 44 | B.1.1 | 0.000798 |
ORF7a | 60 | S60del | AGC | --- | 42 | 42 | P.1.14 | 0.002008 |
ORF7a | 60 | S60del | AGC | --- | 41 | 41 | AY.110 | 0.00462 |
ORF7a | 60 | S60del | AGC | --- | 41 | 41 | AY.117 | 0.003465 |
ORF7a | 60 | S60del | AGC | --- | 41 | 41 | B.1.1.284 | 0.004403 |
ORF7a | 60 | S60del | AGC | --- | 40 | 40 | AY.4.2.1 | 0.005959 |
ORF7a | 60 | S60del | AGC | --- | 40 | 40 | B.1.160 | 0.001248 |
ORF7a | 60 | S60del | AGC | --- | 38 | 38 | AY.34 | 0.003685 |
ORF7a | 60 | S60del | AGC | --- | 35 | 35 | AY.7 | 0.00686 |
ORF7a | 60 | S60del | AGC | --- | 35 | 35 | AY.99.2 | 0.003226 |
ORF7a | 60 | S60del | AGC | --- | 33 | 33 | B.1.1.214 | 0.00183 |
ORF7a | 60 | S60del | AGC | --- | 28 | 28 | AY.60 | 0.026266 |
ORF7a | 60 | S60del | AGC | --- | 28 | 28 | AY.61 | 0.002934 |
ORF7a | 60 | S60del | AGC | --- | 27 | 27 | AY.121 | 0.003654 |
ORF7a | 60 | S60del | AGC | --- | 27 | 27 | B.1.637 | 0.001973 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.111 | 0.004762 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.19 | 0.029647 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.7.2 | 0.014541 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.9.1 | 0.002177 |
ORF7a | 60 | S60del | AGC | --- | 25 | 25 | B.1.596 | 0.002178 |
ORF7a | 60 | S60del | AGC | --- | 23 | 23 | AY.36 | 0.003409 |
ORF7a | 60 | S60del | AGC | --- | 23 | 23 | C.37 | 0.002669 |
ORF7a | 60 | S60del | AGC | --- | 22 | 22 | AY.106 | 0.007368 |
ORF7a | 60 | S60del | AGC | --- | 21 | 21 | AY.30 | 0.00831 |
ORF7a | 60 | S60del | AGC | --- | 21 | 21 | AY.37 | 0.006637 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | AY.74 | 0.002313 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | B.1.214.2 | 0.01199 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | B.1.427 | 0.00101 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | R.1 | 0.0018 |
ORF7a | 60 | S60del | AGC | --- | 19 | 19 | AY.116 | 0.005449 |
ORF7a | 60 | S60del | AGC | --- | 19 | 19 | B.1.1.222 | 0.003876 |
ORF7a | 60 | S60del | AGC | --- | 19 | 19 | Q.8 | 0.003133 |
ORF7a | 60 | S60del | AGC | --- | 17 | 17 | AY.14 | 0.001496 |
ORF7a | 60 | S60del | AGC | --- | 17 | 17 | AY.4.5 | 0.001827 |
ORF7a | 60 | S60del | AGC | --- | 17 | 17 | B.1.1.519 | 0.000675 |
ORF7a | 60 | S60del | AGC | --- | 16 | 16 | AY.1 | 0.006332 |
ORF7a | 60 | S60del | AGC | --- | 16 | 16 | AY.62 | 0.006972 |
ORF7a | 60 | S60del | AGC | --- | 15 | 15 | AY.46.2 | 0.00953 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | AY.114 | 0.003235 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | AY.84 | 0.006124 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | B.1.1.258 | 0.045603 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | B.1.243 | 0.000974 |
ORF7a | 60 | S60del | AGC | --- | 13 | 13 | AY.68 | 0.003559 |
ORF7a | 60 | S60del | AGC | --- | 13 | 13 | B.1.525 | 0.001471 |
ORF7a | 60 | S60del | AGC | --- | 13 | 13 | D.2 | 0.000976 |
ORF7a | 60 | S60del | AGC | --- | 12 | 12 | AY.90 | 0.008214 |
ORF7a | 60 | S60del | AGC | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.12 | 0.003477 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.35 | 0.002564 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.87 | 0.009159 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.99 | 0.011542 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | B.1.177.60 | 0.002403 |
ORF7a | 60 | S60del | AGC | --- | 10 | 10 | B.1.177.56 | 0.006676 |
ORF7a | 60 | S60del | AGC | --- | 10 | 10 | B.1.391 | 0.011274 |
ORF7a | 60 | S60del | AGC | --- | 10 | 10 | B.1.628 | 0.003524 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | AY.109 | 0.006657 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | AY.52 | 0.007329 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | B.1.258.9 | 0.045 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | Q.1 | 0.001137 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | A.21 | 0.022161 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.10 | 0.00424 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.27 | 0.000518 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.59 | 0.004237 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.85 | 0.003417 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | B.1.1.231 | 0.024768 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.32 | 0.003727 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.4.4 | 0.002864 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.65 | 0.003731 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.71 | 0.003325 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.75.1 | 0.001262 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.92 | 0.002011 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | B.1.1.3 | 0.06087 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | P.1.2 | 0.008092 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.108 | 0.006615 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.16 | 0.002278 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.34.1 | 0.00306 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.46.1 | 0.00616 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | B.1.177.20 | 0.009105 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | B.1.258 | 0.000399 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | B.1.595 | 0.001566 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.48 | 0.002326 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.70 | 0.001043 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.80 | 0.005643 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.93 | 0.001365 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.95 | 0.003805 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.1.37 | 0.000964 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.234 | 0.00066 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.258.17 | 0.00052 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.375 | 0.004098 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.70 | 0.121951 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | P.2 | 0.000933 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | A | 0.001548 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.101 | 0.001962 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.22 | 0.008368 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.24 | 0.001724 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.5.3 | 0.00135 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.53 | 0.00115 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.66 | 0.004278 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.73 | 0.002661 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.79 | 0.004843 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.86 | 0.00332 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.1.318 | 0.001207 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.351.2 | 0.00121 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.36 | 0.000584 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.466.2 | 0.001565 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | Q.3 | 0.00058 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | A.23.1 | 0.002113 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.120.2 | 0.003856 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.4.3 | 0.002525 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.40 | 0.002893 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.41 | 0.000882 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.64 | 0.001786 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.69 | 0.00056 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.1 | 0.00098 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.118 | 0.030612 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.160.16 | 0.002788 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.10 | 0.002634 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.57 | 0.000843 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.6 | 0.00293 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.62 | 0.003576 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.81 | 0.000568 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.621.1 | 0.001517 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | P.1.16 | 0.001122 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AD.2 | 0.000438 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.11 | 0.002677 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.16.1 | 0.00094 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.2 | 0.000712 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.39.2 | 0.003082 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.46.3 | 0.001867 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.49 | 0.00639 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.51 | 0.001818 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.57 | 0.001312 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.72 | 0.002721 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.8 | 0.001212 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.10 | 0.00223 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.163 | 0.015267 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.170 | 0.002494 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.219 | 0.01 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.303 | 0.005525 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.317 | 0.000823 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.372 | 0.001377 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.521 | 0.010695 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.139 | 0.001466 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.160.30 | 0.005952 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.12 | 0.000303 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.5 | 0.002484 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.55 | 0.004662 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.190 | 0.02 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.264 | 0.024691 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.36.9 | 0.006431 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.401 | 0.016393 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.415.1 | 0.015152 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.470 | 0.002809 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.576 | 0.001813 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.609 | 0.000959 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.627 | 0.00404 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | P.1.17.1 | 0.00175 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | P.1.4 | 0.001953 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.2.5.3 | 0.010309 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.23 | 0.010526 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AA.7 | 0.009174 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.50 | 0.000799 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.63 | 0.000387 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B | 0.000128 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.123 | 0.017857 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.141 | 0.002012 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.205 | 0.003717 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.209 | 0.008929 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.240 | 0.004695 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.289 | 0.002083 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.329 | 0.003846 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.376 | 0.005952 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.437 | 0.010417 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.160.26 | 0.002421 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.160.29 | 0.004219 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.53 | 0.002392 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.80 | 0.001912 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.213 | 0.014925 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.36.19 | 0.009259 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.404 | 0.001302 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.534 | 0.0125 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.11 | 0.005128 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.3 | 0.000831 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.39 | 0.002331 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.40 | 0.000364 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | C.28 | 0.04 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | C.30 | 0.001727 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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