CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 37 | S37F | nonsyn | tCt | tTt | 5302 | 5301 | 0.999811 | 27502-27504 | |
ORF7a | 37 | S37F | nonsyn | tCT | tTC | 5302 | 1 | 0.000188608 | 27502-27504 |
Details of the mutation S37F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 37 | S37F | tCt | tTt | 5301 | 5302 | All | 0.001014 |
ORF7a | 37 | S37F | tCT | tTC | 1 | 5302 | All | 0 |
ORF7a | 37 | S37F | tCt | tTt | 3235 | 3235 | B.1.1.7 | 0.002896 |
ORF7a | 37 | S37F | tCt | tTt | 264 | 264 | AY.4 | 0.000411 |
ORF7a | 37 | S37F | tCt | tTt | 157 | 157 | B.1.617.2 | 0.000591 |
ORF7a | 37 | S37F | tCt | tTt | 146 | 146 | AY.103 | 0.000907 |
ORF7a | 37 | S37F | tCt | tTt | 141 | 141 | B.1.177.12 | 0.02139 |
ORF7a | 37 | S37F | tCt | tTt | 115 | 115 | AY.43 | 0.00051 |
ORF7a | 37 | S37F | tCt | tTt | 85 | 85 | AY.119 | 0.003001 |
ORF7a | 37 | S37F | tCt | tTt | 82 | 82 | AY.3.1 | 0.006991 |
ORF7a | 37 | S37F | tCt | tTt | 56 | 56 | B.1.2 | 0.000493 |
ORF7a | 37 | S37F | tCt | tTt | 49 | 49 | AY.44 | 0.000298 |
ORF7a | 37 | S37F | tCt | tTt | 36 | 36 | B.1 | 0.00033 |
ORF7a | 37 | S37F | tCt | tTt | 34 | 34 | AY.100 | 0.001564 |
ORF7a | 37 | S37F | tCt | tTt | 33 | 33 | AY.33 | 0.002204 |
ORF7a | 37 | S37F | tCt | tTt | 32 | 32 | P.1 | 0.000504 |
ORF7a | 37 | S37F | tCt | tTt | 30 | 30 | AY.39 | 0.000741 |
ORF7a | 37 | S37F | tCt | tTt | 30 | 30 | B.1.525 | 0.003395 |
ORF7a | 37 | S37F | tCt | tTt | 27 | 27 | B.1.399 | 0.052224 |
ORF7a | 37 | S37F | tCt | tTt | 27 | 27 | D.2 | 0.002026 |
ORF7a | 37 | S37F | tCt | tTt | 26 | 26 | AY.101 | 0.012751 |
ORF7a | 37 | S37F | tCt | tTt | 26 | 26 | AY.3 | 0.000259 |
ORF7a | 37 | S37F | tCt | tTt | 26 | 26 | AY.70 | 0.005421 |
ORF7a | 37 | S37F | tCt | tTt | 24 | 24 | AY.29 | 0.000379 |
ORF7a | 37 | S37F | tCt | tTt | 23 | 23 | B.1.351 | 0.000684 |
ORF7a | 37 | S37F | tCt | tTt | 22 | 22 | AY.102 | 0.000583 |
ORF7a | 37 | S37F | tCt | tTt | 22 | 22 | C.37 | 0.002553 |
ORF7a | 37 | S37F | tCt | tTt | 20 | 20 | B.1.1 | 0.000363 |
ORF7a | 37 | S37F | tCt | tTt | 18 | 18 | AY.25 | 0.000108 |
ORF7a | 37 | S37F | tCt | tTt | 18 | 18 | B.1.526 | 0.000423 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | AY.26 | 0.000481 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | AY.4.2 | 0.000369 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | B.1.429 | 0.0004 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | B.1.637 | 0.001242 |
ORF7a | 37 | S37F | tCt | tTt | 16 | 16 | AY.20 | 0.000622 |
ORF7a | 37 | S37F | tCt | tTt | 15 | 15 | B.1.177 | 0.000198 |
ORF7a | 37 | S37F | tCt | tTt | 14 | 14 | AY.120 | 0.000521 |
ORF7a | 37 | S37F | tCt | tTt | 13 | 13 | B.1.631 | 0.043771 |
ORF7a | 37 | S37F | tCt | tTt | 12 | 12 | B.1.160 | 0.000374 |
ORF7a | 37 | S37F | tCt | tTt | 12 | 12 | B.1.240 | 0.002587 |
ORF7a | 37 | S37F | tCt | tTt | 12 | 12 | B.1.243 | 0.000835 |
ORF7a | 37 | S37F | tCt | tTt | 11 | 11 | B.1.177.81 | 0.002083 |
ORF7a | 37 | S37F | tCt | tTt | 10 | 10 | AY.88 | 0.008842 |
ORF7a | 37 | S37F | tCt | tTt | 9 | 9 | B.1.1.519 | 0.000357 |
ORF7a | 37 | S37F | tCt | tTt | 9 | 9 | Q.1 | 0.001137 |
ORF7a | 37 | S37F | tCt | tTt | 8 | 8 | AY.61 | 0.000838 |
ORF7a | 37 | S37F | tCt | tTt | 8 | 8 | B.1.617.1 | 0.001032 |
ORF7a | 37 | S37F | tCt | tTt | 8 | 8 | Q.3 | 0.00116 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | AY.117 | 0.000507 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | AY.34 | 0.000582 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | AY.57 | 0.003937 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | B.1.177.21 | 0.000459 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | B.1.561 | 0.002382 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | Q.8 | 0.000989 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.23 | 0.000349 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.39.1 | 0.000198 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.40 | 0.004822 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.5 | 0.000103 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | C.38 | 0.040323 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | P.1.15 | 0.001162 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.116 | 0.001147 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.4.5 | 0.00043 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.46 | 0.000416 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.6 | 0.000165 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.1.521 | 0.02139 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.258 | 0.000266 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.258.22 | 0.010667 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.36.8 | 0.004 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.621 | 0.000354 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.14 | 0.000264 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.16 | 0.001139 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.46.6 | 0.000217 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.74 | 0.000347 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.99.2 | 0.000276 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.1.207 | 0.003546 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.160.17 | 0.005102 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | N.4 | 0.012766 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | P.1.14 | 0.000143 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | P.1.17 | 0.000485 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | A | 0.000774 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.12 | 0.000632 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.35 | 0.000466 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.305 | 0.007722 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.528 | 0.009615 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.234 | 0.000264 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.332 | 0.006993 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.375 | 0.001639 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.619 | 0.001742 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | P.1.9 | 0.009615 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | Q.4 | 0.00091 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | Q.7 | 0.002222 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AA.7 | 0.009174 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 37 | S37F | tCT | tTC | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.234 | 0.012048 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.160.8 | 0.001289 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.67 | 0.007634 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.305 | 0.002151 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.391 | 0.001127 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.40 | 0.000364 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | N.5 | 0.001767 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.2 | 0.000187 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.3 | 0.001595 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.5 | 0.013699 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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