CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = Q94X

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	94	Q94X		nonsyn	Caa	Taa	3220	3220	1	27673-27675

Details of the mutation Q94X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	94	Q94X	Caa	Taa	3220	3220	All	0.000616
ORF7a	94	Q94X	Caa	Taa	1194	1194	B.1.1.7	0.001069
ORF7a	94	Q94X	Caa	Taa	366	366	AY.25	0.002201
ORF7a	94	Q94X	Caa	Taa	155	155	AY.75	0.008683
ORF7a	94	Q94X	Caa	Taa	133	133	AY.43	0.000589
ORF7a	94	Q94X	Caa	Taa	126	126	AY.4	0.000196
ORF7a	94	Q94X	Caa	Taa	93	93	B.1.617.2	0.00035
ORF7a	94	Q94X	Caa	Taa	76	76	AY.20	0.002954
ORF7a	94	Q94X	Caa	Taa	65	65	AY.3	0.000647
ORF7a	94	Q94X	Caa	Taa	60	60	AY.102	0.001591
ORF7a	94	Q94X	Caa	Taa	51	51	AY.103	0.000317
ORF7a	94	Q94X	Caa	Taa	50	50	B.1.2	0.00044
ORF7a	94	Q94X	Caa	Taa	42	42	AY.119	0.001483
ORF7a	94	Q94X	Caa	Taa	36	36	P.1	0.000567
ORF7a	94	Q94X	Caa	Taa	35	35	AY.44	0.000213
ORF7a	94	Q94X	Caa	Taa	34	34	B.1.525	0.003847
ORF7a	94	Q94X	Caa	Taa	32	32	AY.6	0.001316
ORF7a	94	Q94X	Caa	Taa	31	31	AY.42	0.001247
ORF7a	94	Q94X	Caa	Taa	26	26	B.1.1.145	0.962963
ORF7a	94	Q94X	Caa	Taa	25	25	AY.46	0.002602
ORF7a	94	Q94X	Caa	Taa	24	24	B.1.177	0.000316
ORF7a	94	Q94X	Caa	Taa	22	22	AY.39.1	0.000871
ORF7a	94	Q94X	Caa	Taa	22	22	B.1.221	0.001563
ORF7a	94	Q94X	Caa	Taa	20	20	B.1	0.000183
ORF7a	94	Q94X	Caa	Taa	19	19	B.1.160	0.000593
ORF7a	94	Q94X	Caa	Taa	18	18	AY.29	0.000284
ORF7a	94	Q94X	Caa	Taa	18	18	AY.98.1	0.000872
ORF7a	94	Q94X	Caa	Taa	17	17	P.1.7	0.005428
ORF7a	94	Q94X	Caa	Taa	16	16	B.1.351	0.000476
ORF7a	94	Q94X	Caa	Taa	14	14	B.1.1	0.000254
ORF7a	94	Q94X	Caa	Taa	11	11	B.1.427	0.000555
ORF7a	94	Q94X	Caa	Taa	11	11	B.1.429	0.000259
ORF7a	94	Q94X	Caa	Taa	10	10	AY.59	0.005297
ORF7a	94	Q94X	Caa	Taa	10	10	AY.61	0.001048
ORF7a	94	Q94X	Caa	Taa	10	10	B.1.526	0.000235
ORF7a	94	Q94X	Caa	Taa	10	10	B.1.637	0.000731
ORF7a	94	Q94X	Caa	Taa	9	9	AY.26	0.000255
ORF7a	94	Q94X	Caa	Taa	9	9	AY.3.1	0.000767
ORF7a	94	Q94X	Caa	Taa	9	9	AY.39	0.000222
ORF7a	94	Q94X	Caa	Taa	9	9	AY.47	0.00028
ORF7a	94	Q94X	Caa	Taa	8	8	AY.27	0.000518
ORF7a	94	Q94X	Caa	Taa	8	8	AY.46.4	0.001316
ORF7a	94	Q94X	Caa	Taa	8	8	Q.8	0.001319
ORF7a	94	Q94X	Caa	Taa	7	7	AY.33	0.000467
ORF7a	94	Q94X	Caa	Taa	7	7	AY.4.4	0.002864
ORF7a	94	Q94X	Caa	Taa	7	7	AY.5	0.000145
ORF7a	94	Q94X	Caa	Taa	7	7	AY.9.2	0.000257
ORF7a	94	Q94X	Caa	Taa	7	7	B.1.36	0.001021
ORF7a	94	Q94X	Caa	Taa	7	7	C.37	0.000812
ORF7a	94	Q94X	Caa	Taa	6	6	AY.100	0.000276
ORF7a	94	Q94X	Caa	Taa	6	6	AY.120	0.000223
ORF7a	94	Q94X	Caa	Taa	6	6	AY.4.2	0.00013
ORF7a	94	Q94X	Caa	Taa	6	6	AZ.2	0.004926
ORF7a	94	Q94X	Caa	Taa	6	6	B.1.258	0.000399
ORF7a	94	Q94X	Caa	Taa	6	6	B.1.575	0.00182
ORF7a	94	Q94X	Caa	Taa	5	5	B.1.1.519	0.000199
ORF7a	94	Q94X	Caa	Taa	5	5	B.1.160.14	0.010593
ORF7a	94	Q94X	Caa	Taa	5	5	B.1.311	0.001373
ORF7a	94	Q94X	Caa	Taa	5	5	D.2	0.000375
ORF7a	94	Q94X	Caa	Taa	4	4	AY.111	0.000733
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.1.170	0.004988
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.1.214	0.000222
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.36.7	0.016
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.438.1	0.000429
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.617.1	0.000516
ORF7a	94	Q94X	Caa	Taa	4	4	P.1.14	0.000191
ORF7a	94	Q94X	Caa	Taa	4	4	P.1.16	0.001496
ORF7a	94	Q94X	Caa	Taa	3	3	AE.8	0.001467
ORF7a	94	Q94X	Caa	Taa	3	3	AY.120.1	0.000963
ORF7a	94	Q94X	Caa	Taa	3	3	AY.23	0.000209
ORF7a	94	Q94X	Caa	Taa	3	3	AY.50	0.002398
ORF7a	94	Q94X	Caa	Taa	3	3	AY.99.2	0.000276
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.1.1	0.00098
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.177.81	0.000568
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.232	0.001612
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.234	0.000396
ORF7a	94	Q94X	Caa	Taa	3	3	C.32	0.069767
ORF7a	94	Q94X	Caa	Taa	3	3	Q.3	0.000435
ORF7a	94	Q94X	Caa	Taa	2	2	AU.2	0.004843
ORF7a	94	Q94X	Caa	Taa	2	2	AY.106	0.00067
ORF7a	94	Q94X	Caa	Taa	2	2	AY.114	0.000462
ORF7a	94	Q94X	Caa	Taa	2	2	AY.116	0.000574
ORF7a	94	Q94X	Caa	Taa	2	2	AY.117	0.000169
ORF7a	94	Q94X	Caa	Taa	2	2	AY.118	0.000125
ORF7a	94	Q94X	Caa	Taa	2	2	AY.35	0.000466
ORF7a	94	Q94X	Caa	Taa	2	2	AY.4.5	0.000215
ORF7a	94	Q94X	Caa	Taa	2	2	AY.45	0.000243
ORF7a	94	Q94X	Caa	Taa	2	2	AY.98	0.000158
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.28	0.000622
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.294	0.002532
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.33	0.000842
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.354	0.008772
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.128	0.001271
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.36.1	0.002281
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.396	0.001411
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.416.1	0.003125
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.595	0.000522
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.596	0.000174
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.623	0.001073
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.628	0.000705
ORF7a	94	Q94X	Caa	Taa	2	2	Q.1	0.000253
ORF7a	94	Q94X	Caa	Taa	1	1	A.2.4	0.003367
ORF7a	94	Q94X	Caa	Taa	1	1	A.2.5	0.000499
ORF7a	94	Q94X	Caa	Taa	1	1	A.21	0.00277
ORF7a	94	Q94X	Caa	Taa	1	1	AT.1	0.005128
ORF7a	94	Q94X	Caa	Taa	1	1	AY.105	0.000643
ORF7a	94	Q94X	Caa	Taa	1	1	AY.30	0.000396
ORF7a	94	Q94X	Caa	Taa	1	1	AY.38	0.000499
ORF7a	94	Q94X	Caa	Taa	1	1	AY.4.2.1	0.000149
ORF7a	94	Q94X	Caa	Taa	1	1	AY.40	0.000964
ORF7a	94	Q94X	Caa	Taa	1	1	AY.46.5	0.000198
ORF7a	94	Q94X	Caa	Taa	1	1	AY.54	0.000095
ORF7a	94	Q94X	Caa	Taa	1	1	AY.58	0.000907
ORF7a	94	Q94X	Caa	Taa	1	1	AY.62	0.000436
ORF7a	94	Q94X	Caa	Taa	1	1	AY.65	0.000533
ORF7a	94	Q94X	Caa	Taa	1	1	AY.75.1	0.00018
ORF7a	94	Q94X	Caa	Taa	1	1	AY.80	0.001129
ORF7a	94	Q94X	Caa	Taa	1	1	AY.84	0.000437
ORF7a	94	Q94X	Caa	Taa	1	1	AY.90	0.000684
ORF7a	94	Q94X	Caa	Taa	1	1	AY.92	0.000287
ORF7a	94	Q94X	Caa	Taa	1	1	AY.94	0.000443
ORF7a	94	Q94X	Caa	Taa	1	1	B	0.000128
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.117	0.009709
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.200	0.007463
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.216	0.00089
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.222	0.000204
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.231	0.003096
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.241	0.00207
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.277	0.000759
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.305	0.003861
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.37	0.000193
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.372	0.000689
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.423	0.0625
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.63	0.000386
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.70	0.000341
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.162	0.005025
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.12	0.000152
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.2	0.004545
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.21	0.000076
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.23	0.003236
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.4	0.000211
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.44	0.000519
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.52	0.001757
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.65	0.000665
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.7	0.000165
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.243	0.00007
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.258.7	0.001912
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.293	0.0125
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.343	0.020833
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.36.38	0.001642
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.36.8	0.001
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.37	0.014706
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.377	0.004566
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.422	0.000812
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.524	0.001406
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.533	0.009615
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.558	0.004566
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.565	0.00081
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.582	0.000491
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.590	0.004545
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.609	0.000479
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.621	0.000089
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.621.1	0.000506
ORF7a	94	Q94X	Caa	Taa	1	1	B.4.7	0.010101
ORF7a	94	Q94X	Caa	Taa	1	1	C.36	0.000911
ORF7a	94	Q94X	Caa	Taa	1	1	P.1.12	0.000484
ORF7a	94	Q94X	Caa	Taa	1	1	P.1.15	0.000232
ORF7a	94	Q94X	Caa	Taa	1	1	P.1.17	0.000162
ORF7a	94	Q94X	Caa	Taa	1	1	P.2	0.000187
ORF7a	94	Q94X	Caa	Taa	1	1	P.4	0.003802

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.